NAME

csg_sphericalorder - Part of the VOTCA package

SYNOPSIS

csg_sphericalorder [OPTIONS]

csg_sphericalorder [–help]

DESCRIPTION

!! EXPERIMENTAL !! Calculate spherical order parameter.

Needs non-spherical beads in mapping.

OPTIONS

Allowed options:

  -h [ --help ]             display this help and exit
  --verbose                 be loud and noisy
  --verbose1                be very loud and noisy
  -v [ --verbose2 ]         be extremly loud and noisy
  --top arg                 atomistic topology file
  --filter arg (=*)       filter molecule names
  --radialcut arg (=0)    radial cutoff: distance from center where bead is
                          considered
  --minrad arg (=0)       minimal distance a parcle has to be apart from center
                          to be considerd
  --refmol arg            Reference molecule
  --rbinw arg (=0)        Do multiple r_bins multiple histograms

Mapping options:

  --cg arg                  coarse graining mapping and bond definitions
                          (xml-file)
  --map-ignore arg          list of molecules to ignore separated by ;
  --no-map                  disable mapping and act on original trajectory

Trajectory options:

  --trj arg                 atomistic trajectory file
  --begin arg (=0)          skip frames before this time (only works for
                          Gromacs files)
  --first-frame arg (=0)    start with this frame
  --nframes arg             process the given number of frames