vg
tools for working with variation graphs
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#include "alignment_path_offsets.hpp"
Namespaces | |
vg | |
vg::algorithms | |
Functions | |
unordered_map< path_handle_t, vector< pair< size_t, bool > > > | vg::algorithms::alignment_path_offsets (const PathPositionHandleGraph &graph, const Alignment &aln, bool just_min, bool nearby, size_t search_limit=0) |
gives just the path positions of the alignment More... | |
void | vg::algorithms::annotate_with_initial_path_positions (const PathPositionHandleGraph &graph, Alignment &aln, size_t search_limit) |
void | vg::algorithms::annotate_with_initial_path_positions (const PathPositionHandleGraph &graph, vector< Alignment > &alns, size_t search_limit) |