vg
tools for working with variation graphs
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#include "gfa.hpp"
#include <gfakluge.hpp>
#include <stPinchGraphs.h>
#include <structures/union_find.hpp>
Classes | |
class | vg::GFAToPinchTranslator |
class | vg::PinchToVGTranslator |
Namespaces | |
vg | |
Functions | |
bool | vg::stPinchSegment_getBlockOrientationSafe (stPinchSegment *segment) |
Get the segment's orientation in its block (false=backward, true=forward), or true (forward) if there is no block. More... | |
bool | vg::gfa_to_graph (istream &in, VG *graph, bool only_perfect_match) |
void | vg::graph_to_gfa (const VG *graph, ostream &out) |
Export the given VG graph to the given GFA file. More... | |