Package org.snpeff.sam
Class SamHeader
- java.lang.Object
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- org.snpeff.sam.SamHeader
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- All Implemented Interfaces:
java.lang.Iterable<java.lang.String>
public class SamHeader extends java.lang.Object implements java.lang.Iterable<java.lang.String>
Sam header- Author:
- pcingola
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Constructor Summary
Constructors Constructor Description SamHeader()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
add(SamHeaderRecord samHeaderRecord)
Add a record to the headervoid
addHeaderRecord(java.lang.String line)
java.util.ArrayList<SamHeaderRecord>
getRecords(java.lang.String recordType)
Get a list of records for this 'recordType'java.util.Iterator<java.lang.String>
iterator()
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Method Detail
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add
public void add(SamHeaderRecord samHeaderRecord)
Add a record to the header
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addHeaderRecord
public void addHeaderRecord(java.lang.String line)
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getRecords
public java.util.ArrayList<SamHeaderRecord> getRecords(java.lang.String recordType)
Get a list of records for this 'recordType'- Parameters:
recordType
-- Returns:
- A new empty list is created if no records are available
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iterator
public java.util.Iterator<java.lang.String> iterator()
- Specified by:
iterator
in interfacejava.lang.Iterable<java.lang.String>
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