Package org.snpeff

Class PromoterSequences


  • public class PromoterSequences
    extends java.lang.Object
    Get promoter sequences from genes
    Author:
    pablocingolani
    • Constructor Summary

      Constructors 
      Constructor Description
      PromoterSequences​(java.lang.String genomeName, java.lang.String fastaFile, java.util.List<java.lang.String> geneIds)  
    • Method Summary

      All Methods Static Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      static void main​(java.lang.String[] args)  
      void run()  
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Field Detail

      • HOME

        public static java.lang.String HOME
      • LEN_UPSTREAM

        public static int LEN_UPSTREAM
      • LEN_AFTER_TSS

        public static int LEN_AFTER_TSS
    • Constructor Detail

      • PromoterSequences

        public PromoterSequences​(java.lang.String genomeName,
                                 java.lang.String fastaFile,
                                 java.util.List<java.lang.String> geneIds)
    • Method Detail

      • main

        public static void main​(java.lang.String[] args)
      • run

        public void run()