Class RegulationBedFileIterator

  • All Implemented Interfaces:
    java.lang.Iterable<Regulation>, java.util.Iterator<Regulation>

    public class RegulationBedFileIterator
    extends RegulationFileIterator
    Opens a GFF3 file and create regulatory elements. Example of regulatory GFF file: ftp://ftp.ensembl.org/pub/release-63/regulation/homo_sapiens/AnnotatedFeatures.gff.gz References (GFF3) : http://www.sequenceontology.org/gff3.shtml
    Author:
    pcingola
    • Constructor Detail

      • RegulationBedFileIterator

        public RegulationBedFileIterator​(java.lang.String fileName,
                                         Genome genome,
                                         java.lang.String name,
                                         java.lang.String cellType)
      • RegulationBedFileIterator

        public RegulationBedFileIterator​(java.lang.String fileName,
                                         java.lang.String name,
                                         java.lang.String cellType)