Class TestCasesHgvsDnaDupNegative
- java.lang.Object
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- org.snpeff.snpEffect.testCases.unity.TestCasesBase
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- org.snpeff.snpEffect.testCases.unity.TestCasesHgvsDnaDupNegative
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public class TestCasesHgvsDnaDupNegative extends TestCasesBase
Test cases for HGVS's 'dup' on the negative strand
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Field Summary
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Fields inherited from class org.snpeff.snpEffect.testCases.unity.TestCasesBase
addUtrs, BASE_DIR, chromoBases, chromoSequence, chromosome, codonTable, config, debug, gene, genome, genomeName, maxExons, maxGeneLen, maxTranscripts, minExons, numGenes, onlyMinusStrand, onlyPlusStrand, prefixes, rand, randSeed, shiftHgvs, snpEffectPredictor, spliceRegionExonSize, spliceRegionIntronMax, spliceRegionIntronMin, testType, transcript, verbose
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Constructor Summary
Constructors Constructor Description TestCasesHgvsDnaDupNegative()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description protected void
init()
void
test_01()
void
test_02()
void
test_03()
Dup on the reverse strand: More than one basevoid
test_04()
Dup on the reverse strand: More than one base-
Methods inherited from class org.snpeff.snpEffect.testCases.unity.TestCasesBase
after, before, checkApply, checkApplyDel, checkApplyIns, checkApplyMixed, checkApplyMnp, checkApplySnp, checkEffect, checkEffect, formatVersion, hasEffect, initRand, initSnpEffPredictor, initSnpEffPredictor, path, pathClassName, prependSequenceToFirstExon
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Method Detail
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init
protected void init()
- Overrides:
init
in classTestCasesBase
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test_01
@Test public void test_01()
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test_02
@Test public void test_02()
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test_03
@Test public void test_03()
Dup on the reverse strand: More than one base
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test_04
@Test public void test_04()
Dup on the reverse strand: More than one base
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