Class PdbFile


  • public class PdbFile
    extends java.lang.Object
    A structure that reads PDB files This code is similar to 'PDBFileReader' from BioJava, but the BioJava version doesn't close file descriptors and eventually produces a crash when reading many files.
    Author:
    pcingola
    • Constructor Summary

      Constructors 
      Constructor Description
      PdbFile()  
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      org.biojava.nbio.structure.Structure getStructure​(java.lang.String filename)
      Opens filename, parses it and returns aStructure object .
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • PdbFile

        public PdbFile()
    • Method Detail

      • getStructure

        public org.biojava.nbio.structure.Structure getStructure​(java.lang.String filename)
                                                          throws java.io.IOException
        Opens filename, parses it and returns aStructure object .
        Throws:
        java.io.IOException