Class TestCasesIntegrationSnp
- java.lang.Object
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- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
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- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationSnp
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public class TestCasesIntegrationSnp extends TestCasesIntegrationBase
Test SNP variants- Author:
- pcingola
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Field Summary
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Fields inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
BASE_DIR, debug, ignoreErrors, prefixes, shiftHgvs, SHOW_EVERY, testsDir, testType, verbose
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Constructor Summary
Constructors Constructor Description TestCasesIntegrationSnp()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
test_02_Start_NonSyn()
Change of start codon to an alternative start codonvoid
test_02_StopGained_HighImpact()
Stop gained should have 'HIGH' impactvoid
test_03_Start_Loss()
Change of start codon to an alternative start codon-
Methods inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
applyTranscript, before, build, buildAndCompare, buildEmbl, buildGeneBank, buildGeneBank, buildGetBuildCmd, buildGff3AndCompare, buildGtfAndCompare, checkHgvs, checkNoChange, checkTranscriptError, compareHgvs, compareHgvs, compareVep, compareVepSO, init, loadSnpEffectPredictor, path, pathClassName, pathMigrate, showTranscripts, showTranscripts, snpEffect, snpEffect, snpEffectCancer
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Method Detail
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test_02_Start_NonSyn
@Test public void test_02_Start_NonSyn()
Change of start codon to an alternative start codon
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test_02_StopGained_HighImpact
@Test public void test_02_StopGained_HighImpact()
Stop gained should have 'HIGH' impact
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test_03_Start_Loss
@Test public void test_03_Start_Loss()
Change of start codon to an alternative start codon
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