Class TestCasesIntegrationStructural
- java.lang.Object
-
- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
-
- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationStructural
-
public class TestCasesIntegrationStructural extends TestCasesIntegrationBase
Test SNP variants- Author:
- pcingola
-
-
Field Summary
-
Fields inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
BASE_DIR, debug, ignoreErrors, prefixes, shiftHgvs, SHOW_EVERY, testsDir, testType, verbose
-
-
Constructor Summary
Constructors Constructor Description TestCasesIntegrationStructural()
-
Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
test_01_DUP_fusion()
Duplication creates a gene fusionvoid
test_02_INV_fusion()
Duplication creates a gene fusionvoid
test_03_DEL_fusion()
Deletion creates a gene fusionvoid
test_04_fusion()
Deletion creates a gene fusionvoid
test_05_fusion()
Deletion creates a gene fusionvoid
test_06_fusion()
Annotate intron rank in gene_fusion-
Methods inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
applyTranscript, before, build, buildAndCompare, buildEmbl, buildGeneBank, buildGeneBank, buildGetBuildCmd, buildGff3AndCompare, buildGtfAndCompare, checkHgvs, checkNoChange, checkTranscriptError, compareHgvs, compareHgvs, compareVep, compareVepSO, init, loadSnpEffectPredictor, path, pathClassName, pathMigrate, showTranscripts, showTranscripts, snpEffect, snpEffect, snpEffectCancer
-
-
-
-
Method Detail
-
test_01_DUP_fusion
@Test public void test_01_DUP_fusion()
Duplication creates a gene fusion
-
test_02_INV_fusion
@Test public void test_02_INV_fusion()
Duplication creates a gene fusion
-
test_03_DEL_fusion
@Test public void test_03_DEL_fusion()
Deletion creates a gene fusion
-
test_04_fusion
@Test public void test_04_fusion()
Deletion creates a gene fusion
-
test_05_fusion
@Test public void test_05_fusion()
Deletion creates a gene fusion
-
test_06_fusion
@Test public void test_06_fusion()
Annotate intron rank in gene_fusion
-
-