Class BlastResultEntry

  • All Implemented Interfaces:
    java.lang.Comparable<BlastResultEntry>

    public class BlastResultEntry
    extends java.lang.Object
    implements java.lang.Comparable<BlastResultEntry>
    • Field Detail

      • qseqid

        public java.lang.String qseqid
      • sseqid

        public java.lang.String sseqid
      • pident

        public double pident
      • length

        public int length
      • mismatch

        public int mismatch
      • gapopen

        public int gapopen
      • qstart

        public int qstart
      • qend

        public int qend
      • sstart

        public int sstart
      • send

        public int send
      • evalue

        public double evalue
      • bitscore

        public int bitscore
    • Constructor Detail

      • BlastResultEntry

        public BlastResultEntry()
    • Method Detail

      • fixStartEnd

        public void fixStartEnd()
        Swap start- end positions if they are not in order
      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object