Class Result

  • All Implemented Interfaces:
    java.lang.Comparable<Result>

    public class Result
    extends java.lang.Object
    implements java.lang.Comparable<Result>
    Store a result form a greedy search algorithm
    Author:
    Pablo Cingolani
    • Constructor Detail

      • Result

        public Result()
      • Result

        public Result​(GeneSet geneSet,
                      org.apfloat.Apfloat pValue,
                      int geneSetCount)
      • Result

        public Result​(java.util.List<GeneSet> list,
                      double pValue)
      • Result

        public Result​(Result res)
    • Method Detail

      • addGeneSetCount

        public void addGeneSetCount​(int count)
        Add an item to the list of counts
        Parameters:
        count -
      • compareTo

        public int compareTo​(Result res)
        Specified by:
        compareTo in interface java.lang.Comparable<Result>
      • getGeneSetCount

        public java.util.List<java.lang.Integer> getGeneSetCount()
      • getGeneSetCountLast

        public int getGeneSetCountLast()
      • getGeneSets

        public java.util.List<GeneSet> getGeneSets()
      • getLatestGeneSet

        public GeneSet getLatestGeneSet()
      • getPvalue

        public org.apfloat.Apfloat getPvalue()
      • getPvalueAdjusted

        public double getPvalueAdjusted()
        P-Value adjusted using
        Returns:
      • getPvalueDouble

        public double getPvalueDouble()
      • isEmpty

        public boolean isEmpty()
      • set

        public void set​(java.util.List<GeneSet> geneSets,
                        org.apfloat.Apfloat pValue)
        Ser a new list and pvalue
        Parameters:
        geneSets -
        pvalue -
      • setGeneSetCount

        public void setGeneSetCount​(java.util.List<java.lang.Integer> geneSetCount)
      • setGeneSetCountLast

        public void setGeneSetCountLast​(int count)
      • setGeneSets

        public void setGeneSets​(java.util.List<GeneSet> newGeneSets)
        Assign geneSets
        Parameters:
        newGeneSets -
      • setPvalue

        public void setPvalue​(org.apfloat.Apfloat pValue)
      • setPvalue

        public void setPvalue​(double pValue)
      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object