Class NextProtMarkerFactory


  • public class NextProtMarkerFactory
    extends java.lang.Object
    Creates Markers from nextprot XML annotations
    Author:
    Pablo Cingolani
    • Constructor Detail

      • NextProtMarkerFactory

        public NextProtMarkerFactory​(Config config)
    • Method Detail

      • conservation

        public void conservation()
        Sequence conservations analysis. Tag highly conserved NextProt markers
      • getMarkers

        public Markers getMarkers()
      • nextProt

        public Markers nextProt​(Transcript tr,
                                java.lang.String accession,
                                java.lang.String name,
                                int aaStart,
                                int aaEnd)
        Create a single NextProt marker
      • saveDatabase

        public void saveDatabase()
        Save nextprot markers as databases