Package org.snpeff.interval
Class ChromosomeSimpleName
- java.lang.Object
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- org.snpeff.interval.ChromosomeSimpleName
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public class ChromosomeSimpleName extends java.lang.Object
Convert chromosome names to simple names- Author:
- pcingola
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Field Summary
Fields Modifier and Type Field Description static java.lang.String[]
CHROMO_PREFIX
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description static java.lang.String
get(java.lang.String chrName)
Get a simple name for the chromosomeprotected java.lang.String
simpleName(java.lang.String chr)
Simplify chromosome nameprotected java.lang.String
simpleNameCache(java.lang.String chrName)
Query cache before simplifying name
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Method Detail
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get
public static java.lang.String get(java.lang.String chrName)
Get a simple name for the chromosome
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simpleName
protected java.lang.String simpleName(java.lang.String chr)
Simplify chromosome name
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simpleNameCache
protected java.lang.String simpleNameCache(java.lang.String chrName)
Query cache before simplifying name
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