Class DnaAndQualitySequenceWithId

  • All Implemented Interfaces:
    java.io.Serializable, java.lang.Cloneable, java.lang.Comparable<BinarySequence>

    public class DnaAndQualitySequenceWithId
    extends DnaAndQualitySequence
    DnaAndQualitySequence with an ID
    Author:
    pcingola
    See Also:
    Serialized Form
    • Constructor Detail

      • DnaAndQualitySequenceWithId

        public DnaAndQualitySequenceWithId​(java.lang.String seqStr)
      • DnaAndQualitySequenceWithId

        public DnaAndQualitySequenceWithId​(java.lang.String seqStr,
                                           java.lang.String qualityStr,
                                           org.biojava.nbio.genome.io.fastq.FastqVariant type)
    • Method Detail

      • getId

        public long getId()
      • readDataStream

        protected void readDataStream​(java.io.DataInputStream dataInStream)
                               throws java.io.IOException
        Read data in binary format
        Overrides:
        readDataStream in class DnaAndQualitySequence
        Parameters:
        dataOutStream -
        Throws:
        java.io.IOException
      • write

        public void write​(java.io.DataOutputStream dataOutStream)
                   throws java.io.IOException
        Write data in binary format
        Overrides:
        write in class DnaAndQualitySequence
        Parameters:
        dataOutStream -
        Throws:
        java.io.IOException