Package org.snpeff.geneSets
Class Result
- java.lang.Object
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- org.snpeff.geneSets.Result
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
addGeneSetCount(int count)
Add an item to the list of countsint
compareTo(Result res)
java.util.List<java.lang.Integer>
getGeneSetCount()
int
getGeneSetCountLast()
java.util.List<GeneSet>
getGeneSets()
GeneSet
getLatestGeneSet()
org.apfloat.Apfloat
getPvalue()
double
getPvalueAdjusted()
P-Value adjusted usingdouble
getPvalueDouble()
boolean
isEmpty()
void
set(java.util.List<GeneSet> geneSets, org.apfloat.Apfloat pValue)
Ser a new list and pvaluevoid
setGeneSetCount(java.util.List<java.lang.Integer> geneSetCount)
void
setGeneSetCountLast(int count)
void
setGeneSets(java.util.List<GeneSet> newGeneSets)
Assign geneSetsvoid
setPvalue(double pValue)
void
setPvalue(org.apfloat.Apfloat pValue)
java.lang.String
toString()
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Method Detail
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addGeneSetCount
public void addGeneSetCount(int count)
Add an item to the list of counts- Parameters:
count
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compareTo
public int compareTo(Result res)
- Specified by:
compareTo
in interfacejava.lang.Comparable<Result>
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getGeneSetCount
public java.util.List<java.lang.Integer> getGeneSetCount()
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getGeneSetCountLast
public int getGeneSetCountLast()
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getGeneSets
public java.util.List<GeneSet> getGeneSets()
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getLatestGeneSet
public GeneSet getLatestGeneSet()
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getPvalue
public org.apfloat.Apfloat getPvalue()
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getPvalueAdjusted
public double getPvalueAdjusted()
P-Value adjusted using- Returns:
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getPvalueDouble
public double getPvalueDouble()
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isEmpty
public boolean isEmpty()
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set
public void set(java.util.List<GeneSet> geneSets, org.apfloat.Apfloat pValue)
Ser a new list and pvalue- Parameters:
geneSets
-pvalue
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setGeneSetCount
public void setGeneSetCount(java.util.List<java.lang.Integer> geneSetCount)
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setGeneSetCountLast
public void setGeneSetCountLast(int count)
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setGeneSets
public void setGeneSets(java.util.List<GeneSet> newGeneSets)
Assign geneSets- Parameters:
newGeneSets
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setPvalue
public void setPvalue(org.apfloat.Apfloat pValue)
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setPvalue
public void setPvalue(double pValue)
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toString
public java.lang.String toString()
- Overrides:
toString
in classjava.lang.Object
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