Class TranscriptSet

  • All Implemented Interfaces:
    java.lang.Iterable<Transcript>

    public class TranscriptSet
    extends java.lang.Object
    implements java.lang.Iterable<Transcript>
    A set of transcripts
    Author:
    pablocingolani
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void filter()
      Filter out "bad transcripts"
      java.util.List<Transcript> getByChromo​(java.lang.String chrName)  
      java.util.Iterator<Transcript> iterator()  
      void setDebug​(boolean debug)  
      void setVerbose​(boolean verbose)  
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
      • Methods inherited from interface java.lang.Iterable

        forEach, spliterator
    • Field Detail

      • MAX_TRANSCRIPTS_PER_GENE

        public static final int MAX_TRANSCRIPTS_PER_GENE
        See Also:
        Constant Field Values
    • Constructor Detail

      • TranscriptSet

        public TranscriptSet​(Genome genome)
    • Method Detail

      • filter

        public void filter()
        Filter out "bad transcripts"
      • getByChromo

        public java.util.List<Transcript> getByChromo​(java.lang.String chrName)
      • iterator

        public java.util.Iterator<Transcript> iterator()
        Specified by:
        iterator in interface java.lang.Iterable<Transcript>
      • setDebug

        public void setDebug​(boolean debug)
      • setVerbose

        public void setVerbose​(boolean verbose)