Package org.snpeff.fileIterator
Class BlastResultEntry
- java.lang.Object
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- org.snpeff.fileIterator.BlastResultEntry
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- All Implemented Interfaces:
java.lang.Comparable<BlastResultEntry>
public class BlastResultEntry extends java.lang.Object implements java.lang.Comparable<BlastResultEntry>
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Constructor Summary
Constructors Constructor Description BlastResultEntry()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description int
compareTo(BlastResultEntry bre)
void
fixStartEnd()
Swap start- end positions if they are not in orderjava.lang.String
toString()
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Field Detail
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qseqid
public java.lang.String qseqid
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sseqid
public java.lang.String sseqid
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pident
public double pident
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length
public int length
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mismatch
public int mismatch
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gapopen
public int gapopen
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qstart
public int qstart
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qend
public int qend
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sstart
public int sstart
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send
public int send
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evalue
public double evalue
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bitscore
public int bitscore
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Method Detail
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compareTo
public int compareTo(BlastResultEntry bre)
- Specified by:
compareTo
in interfacejava.lang.Comparable<BlastResultEntry>
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fixStartEnd
public void fixStartEnd()
Swap start- end positions if they are not in order
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toString
public java.lang.String toString()
- Overrides:
toString
in classjava.lang.Object
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