Package org.snpeff.stats
Class HomHetStats
- java.lang.Object
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- org.snpeff.stats.HomHetStats
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- All Implemented Interfaces:
SamplingStats<VcfEntry>
public class HomHetStats extends java.lang.Object implements SamplingStats<VcfEntry>
Count Hom/Het per sample From Pierre: For multiple ALT, I suggest to count the number of REF allele 0/1 => ALT1 0/2 => ALT1 1/1 => ALT2 2/2 => ALT2 1/2 => ALT2- Author:
- pablocingolani
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Constructor Summary
Constructors Constructor Description HomHetStats()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description boolean
hasData()
Does this statistic have any data?void
sample(VcfEntry vcfEntry)
Update Hom/Het countersjava.lang.String
toString()
Show results to stdout
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Method Detail
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hasData
public boolean hasData()
Description copied from interface:SamplingStats
Does this statistic have any data?- Specified by:
hasData
in interfaceSamplingStats<VcfEntry>
- Returns:
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sample
public void sample(VcfEntry vcfEntry)
Update Hom/Het counters- Specified by:
sample
in interfaceSamplingStats<VcfEntry>
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toString
public java.lang.String toString()
Show results to stdout- Overrides:
toString
in classjava.lang.Object
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