Class MicroCosmFileIterator
- java.lang.Object
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- org.snpeff.fileIterator.FileIterator<T>
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- org.snpeff.fileIterator.LineClassFileIterator<MicroCosmEntry>
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- org.snpeff.fileIterator.microCosm.MicroCosmFileIterator
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- All Implemented Interfaces:
java.lang.Iterable<MicroCosmEntry>
,java.util.Iterator<MicroCosmEntry>
public class MicroCosmFileIterator extends LineClassFileIterator<MicroCosmEntry>
Iterate on each line of a MicroCosm predictions References: http://www.ebi.ac.uk/enright-srv/microcosm/- Author:
- pcingola
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Field Summary
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Fields inherited from class org.snpeff.fileIterator.LineClassFileIterator
clazz, debug, FIELD_NAME_SEPARATOR, fieldByName, fieldNames, fieldStr, separator
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Constructor Summary
Constructors Constructor Description MicroCosmFileIterator(java.lang.String fileName)
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Method Summary
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Methods inherited from class org.snpeff.fileIterator.LineClassFileIterator
createObject, fieldMap, iterator, readNext, setSeparator
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Methods inherited from class org.snpeff.fileIterator.FileIterator
close, countNewLineChars, getFilePointer, getLine, getLineNum, guessNewLineChars, hasNext, hasSeek, init, isDebug, load, next, readLine, ready, remove, seek, setAutoClose, setDebug, setVerbose, toString
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