Class TestCasesGenePvalueList
- java.lang.Object
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- org.snpeff.snpEffect.testCases.unity.TestCasesGenePvalueList
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public class TestCasesGenePvalueList extends java.lang.Object
GenePvalueList statistics test case- Author:
- pcingola
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Constructor Summary
Constructors Constructor Description TestCasesGenePvalueList()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
test_01()
Combined p-value : MINvoid
test_02()
Combined p-value : AVGvoid
test_03()
Combined p-value : AVG10void
test_04()
Complementary CDF for Chi^2 distributionvoid
test_05()
Combined p-value : FISHER_CHI_SQUAREvoid
test_06()
Combined p-value : Z_SCORESvoid
test_07()
Combined p-value : FDR Reference for this test: http://stat.ethz.ch/R-manual/R-devel/library/stats/html/p.adjust.html R code: set.seed(123) x <- rnorm(50, mean = c(rep(0, 25), rep(3, 25))) p <- 2*pnorm(sort(-abs(x))) p.adjust(p, "fdr")void
test_08()
Test quantilevoid
test_09()
Test CDF (cumulative distribution function)
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Method Detail
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test_01
public void test_01()
Combined p-value : MIN
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test_02
public void test_02()
Combined p-value : AVG
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test_03
public void test_03()
Combined p-value : AVG10
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test_04
public void test_04()
Complementary CDF for Chi^2 distribution
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test_05
public void test_05()
Combined p-value : FISHER_CHI_SQUARE
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test_06
public void test_06()
Combined p-value : Z_SCORES
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test_07
public void test_07()
Combined p-value : FDR Reference for this test: http://stat.ethz.ch/R-manual/R-devel/library/stats/html/p.adjust.html R code: set.seed(123) x <- rnorm(50, mean = c(rep(0, 25), rep(3, 25))) p <- 2*pnorm(sort(-abs(x))) p.adjust(p, "fdr")
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test_08
public void test_08()
Test quantile
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test_09
public void test_09()
Test CDF (cumulative distribution function)
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