Package org.snpeff.stats
Class ObservedOverExpectedCHH
- java.lang.Object
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- org.snpeff.stats.ObservedOverExpected
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- org.snpeff.stats.ObservedOverExpectedCHH
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public class ObservedOverExpectedCHH extends ObservedOverExpected
Observed over expected values (o/e) of CHH in a sequence- Author:
- pcingola
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Constructor Summary
Constructors Constructor Description ObservedOverExpectedCHH()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description double
expected(java.lang.String sequence)
int
observed(java.lang.String sequence)
Count the number of CHH in this sequence
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Method Detail
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expected
public double expected(java.lang.String sequence)
- Specified by:
expected
in classObservedOverExpected
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observed
public int observed(java.lang.String sequence)
Count the number of CHH in this sequence- Specified by:
observed
in classObservedOverExpected
- Parameters:
sequence
-- Returns:
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