Class TestCasesIntegrationVcfs


  • public class TestCasesIntegrationVcfs
    extends java.lang.Object
    VCF annotations test cases
    Author:
    pcingola
    • Constructor Detail

      • TestCasesIntegrationVcfs

        public TestCasesIntegrationVcfs()
    • Method Detail

      • create1kgFile

        public static void create1kgFile()
                                  throws java.io.IOException
        Creates a test file
        Throws:
        java.io.IOException
      • test_01_vcf_bed_filter

        public void test_01_vcf_bed_filter()
      • test_02_Annotating_LOF_Spaces

        public void test_02_Annotating_LOF_Spaces()
        Annotating LOF / NMD using a geneName that contains spaces triggers an Exception (it shouldn't happen)
      • test_03_do_not_annotate_non_variants

        public void test_03_do_not_annotate_non_variants()
        Non-variant VCF entries should be skipped (i.e. no annotation should be added)