Package org.snpeff.motif
Class PwmAndSeqs
- java.lang.Object
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- org.snpeff.motif.Pwm
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- org.snpeff.motif.PwmAndSeqs
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public class PwmAndSeqs extends Pwm
Create a DNA motif count matrix and also count the number of sequences in that contribute to this motif.- Author:
- pcingola
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Constructor Summary
Constructors Constructor Description PwmAndSeqs(int len)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description java.lang.String
toString()
void
updateCounts(java.lang.String dna, int inc, long rsId)
Update counts matrix.-
Methods inherited from class org.snpeff.motif.Pwm
calcLogOddsWeight, getBestSequence, getBestSequenceStr, getCount, getId, getLogOdds, getName, getTotalCount, isConserved, length, score, set, setCounts, setId, setName, updateCounts, updateCounts
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