Class TestCasesIntegrationCircularGenome
- java.lang.Object
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- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
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- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationCircularGenome
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public class TestCasesIntegrationCircularGenome extends TestCasesIntegrationBase
Test case
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Field Summary
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Fields inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
debug, ignoreErrors, shiftHgvs, SHOW_EVERY, testsDir, verbose
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Constructor Summary
Constructors Constructor Description TestCasesIntegrationCircularGenome()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
testCase_01_CircularGenome()
void
testCase_02_CircularGenome()
void
testCase_02_CircularGenome_end()
void
testCase_03_CircularGenome()
void
testCase_04_CircularGenome()
void
testCase_05_CircularGenome_ExonsOrder()
void
testCase_06_CircularGenome_ExonsOrder()
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Methods inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
appyTranscript, build, buildAndCompare, buildEmbl, buildGeneBank, buildGff3AndCompare, buildGtfAndCompare, checkHgvs, checkNoChange, checkTranscriptError, compareHgvs, compareHgvs, compareVep, compareVepSO, init, loadSnpEffectPredictor, showTranscripts, showTranscripts, snpEffect, snpEffect, snpEffectCancer
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Method Detail
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testCase_01_CircularGenome
public void testCase_01_CircularGenome()
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testCase_02_CircularGenome
public void testCase_02_CircularGenome()
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testCase_02_CircularGenome_end
public void testCase_02_CircularGenome_end()
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testCase_03_CircularGenome
public void testCase_03_CircularGenome()
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testCase_04_CircularGenome
public void testCase_04_CircularGenome()
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testCase_05_CircularGenome_ExonsOrder
public void testCase_05_CircularGenome_ExonsOrder()
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testCase_06_CircularGenome_ExonsOrder
public void testCase_06_CircularGenome_ExonsOrder()
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