Uses of Class
org.snpeff.interval.MarkerSeq
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Packages that use MarkerSeq Package Description org.snpeff.binseq org.snpeff.interval -
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Uses of MarkerSeq in org.snpeff.binseq
Methods in org.snpeff.binseq that return MarkerSeq Modifier and Type Method Description MarkerSeq
GenomicSequences. queryMarkerSequence(Marker marker)
Find a marker (with sequence) containing query 'marker' Could trigger loading sequences form databaseMethods in org.snpeff.binseq that return types with arguments of type MarkerSeq Modifier and Type Method Description java.util.Iterator<MarkerSeq>
GenomicSequences. iterator()
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Uses of MarkerSeq in org.snpeff.interval
Subclasses of MarkerSeq in org.snpeff.interval Modifier and Type Class Description class
Exon
Interval for an exonMethods in org.snpeff.interval that return MarkerSeq Modifier and Type Method Description MarkerSeq
MarkerSeq. apply(Variant variant)
Apply variantMarkerSeq
MarkerSeq. cloneShallow()
Methods in org.snpeff.interval with parameters of type MarkerSeq Modifier and Type Method Description protected void
MarkerSeq. applyDel(Variant variant, MarkerSeq markerSeq)
Apply a change type deletion (update sequence)protected void
MarkerSeq. applyDup(Variant variant, MarkerSeq markerSeq)
Apply a change type duplication (update sequence)protected void
MarkerSeq. applyIns(Variant variant, MarkerSeq markerSeq)
Apply a change type insertion (update sequence)protected void
MarkerSeq. applyMnp(Variant variant, MarkerSeq markerSeq)
Apply a change type MNP (update sequence)protected void
MarkerSeq. applySnp(Variant variant, MarkerSeq markerSeq)
Apply a change type SNP (update sequence)
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