Class PwmAndSeqs


  • public class PwmAndSeqs
    extends Pwm
    Create a DNA motif count matrix and also count the number of sequences in that contribute to this motif.
    Author:
    pcingola
    • Constructor Detail

      • PwmAndSeqs

        public PwmAndSeqs​(int len)
    • Method Detail

      • toString

        public java.lang.String toString()
        Overrides:
        toString in class Pwm
      • updateCounts

        public void updateCounts​(java.lang.String dna,
                                 int inc,
                                 long rsId)
        Update counts matrix.
        Parameters:
        dna -