Uses of Class
org.snpeff.geneSets.algorithm.EnrichmentAlgorithmGreedy
-
Packages that use EnrichmentAlgorithmGreedy Package Description org.snpeff.geneSets.algorithm -
-
Uses of EnrichmentAlgorithmGreedy in org.snpeff.geneSets.algorithm
Subclasses of EnrichmentAlgorithmGreedy in org.snpeff.geneSets.algorithm Modifier and Type Class Description class
EnrichmentAlgorithmGreedyVariableSize
A greedy enrichment algorithm for selecting gene-sets using a variable geneSet-size strategy: i) Select only from geneSets in low-sizes e.g.class
FisherPValueGreedyAlgorithm
class
LeadingEdgeFractionAlgorithm
Leading edge fraction algorithm References: "Common Inherited Variation in Mitochondrial Genes Is Not Enriched for Associations with Type 2 Diabetes or Related Glycemic Traits" http://www.plosgenetics.org/article/info%3Adoi%2F10.1371%2Fjournal.pgen.1001058 See page 12, "Step 4"class
RankSumPValueGreedyAlgorithm
-