Class TestCasesIntegrationMixedVariants
- java.lang.Object
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- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationMixedVariants
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public class TestCasesIntegrationMixedVariants extends java.lang.Object
Test mixed variants- Author:
- pcingola
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Constructor Summary
Constructors Constructor Description TestCasesIntegrationMixedVariants()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
compareVep(java.lang.String genome, java.lang.String vcf)
Compare with results from ENSEMBL's VEP to SnpEff Use VCF having VEP's resultsvoid
test_01_MixedVep()
Make sure we can read VCF and parse variants without producing any exceptionvoid
test_02_MixedVep()
void
test_03_MixedVep()
void
test_04_MixedVep()
void
test_05_MixedVep()
void
test_06_MixedVep()
void
test_07_MixedVep()
void
test_08_MixedVep()
void
test_09_MixedVep()
void
test_11_ExonRank()
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Method Detail
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compareVep
public void compareVep(java.lang.String genome, java.lang.String vcf)
Compare with results from ENSEMBL's VEP to SnpEff Use VCF having VEP's results
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test_01_MixedVep
public void test_01_MixedVep()
Make sure we can read VCF and parse variants without producing any exception
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test_02_MixedVep
public void test_02_MixedVep()
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test_03_MixedVep
public void test_03_MixedVep()
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test_04_MixedVep
public void test_04_MixedVep()
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test_05_MixedVep
public void test_05_MixedVep()
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test_06_MixedVep
public void test_06_MixedVep()
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test_07_MixedVep
public void test_07_MixedVep()
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test_08_MixedVep
public void test_08_MixedVep()
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test_09_MixedVep
public void test_09_MixedVep()
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test_11_ExonRank
public void test_11_ExonRank()
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