Class SnpEffCmdDownload

  • All Implemented Interfaces:
    CommandLine

    public class SnpEffCmdDownload
    extends SnpEff
    Command line program: Build database
    Author:
    pcingola
    • Constructor Detail

      • SnpEffCmdDownload

        public SnpEffCmdDownload()
    • Method Detail

      • parseArgs

        public void parseArgs​(java.lang.String[] args)
        Parse command line arguments
        Specified by:
        parseArgs in interface CommandLine
        Overrides:
        parseArgs in class SnpEff
      • run

        public boolean run()
        Download database from server
        Specified by:
        run in interface CommandLine
        Overrides:
        run in class SnpEff
      • usage

        public void usage​(java.lang.String message)
        Show 'usage;' message and exit with an error code '-1'
        Specified by:
        usage in interface CommandLine
        Overrides:
        usage in class SnpEff