Class SubsequenceComparator<T extends BinarySequence>

    • Method Summary

      All Methods Instance Methods Abstract Methods 
      Modifier and Type Method Description
      abstract int compare​(T seq1, int start1, T seq2, int start2)  
      abstract int score​(T seq1, int start1, T seq2, int start2)  
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • SubsequenceComparator

        public SubsequenceComparator()
    • Method Detail

      • compare

        public abstract int compare​(T seq1,
                                    int start1,
                                    T seq2,
                                    int start2)
      • score

        public abstract int score​(T seq1,
                                  int start1,
                                  T seq2,
                                  int start2)