Class TestCasesIntegrationEmbl
- java.lang.Object
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- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
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- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationEmbl
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public class TestCasesIntegrationEmbl extends TestCasesIntegrationBase
Test case for EMBL file parsing (database creation)- Author:
- pcingola
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Field Summary
Fields Modifier and Type Field Description static boolean
debug
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Fields inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
ignoreErrors, shiftHgvs, SHOW_EVERY, testsDir, verbose
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Constructor Summary
Constructors Constructor Description TestCasesIntegrationEmbl()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
after()
void
before()
void
testCase_Exon_Simple()
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Methods inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
appyTranscript, build, buildAndCompare, buildEmbl, buildGeneBank, buildGff3AndCompare, buildGtfAndCompare, checkHgvs, checkNoChange, checkTranscriptError, compareHgvs, compareHgvs, compareVep, compareVepSO, init, loadSnpEffectPredictor, showTranscripts, showTranscripts, snpEffect, snpEffect, snpEffectCancer
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