Class WorkerEff
- java.lang.Object
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- org.snpeff.akka.ConcurrentActor
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- org.snpeff.akka.Worker<VcfEntry,java.lang.String>
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- org.snpeff.akka.vcfStr.WorkerVcfStr
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- org.snpeff.snpEffect.commandLine.eff.WorkerEff
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- All Implemented Interfaces:
java.util.concurrent.Callable<Result<java.lang.String>>
public class WorkerEff extends WorkerVcfStr
Worker agent for SnpEff 'eff' command- Author:
- pablocingolani
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Constructor Summary
Constructors Constructor Description WorkerEff(SnpEffCmdEff snpEffCmdEff, SnpEffectPredictor snpEffectPredictor, OutputFormatter outputFormatter, IntervalForest filterIntervals)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description java.lang.String
calculate(VcfEntry vcfEntry)
Perform main calculation You must override this method to perform whatever calculation you want to implement-
Methods inherited from class org.snpeff.akka.Worker
calculate, call, getId, setMessage
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Constructor Detail
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WorkerEff
public WorkerEff(SnpEffCmdEff snpEffCmdEff, SnpEffectPredictor snpEffectPredictor, OutputFormatter outputFormatter, IntervalForest filterIntervals)
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Method Detail
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calculate
public java.lang.String calculate(VcfEntry vcfEntry)
Description copied from class:Worker
Perform main calculation You must override this method to perform whatever calculation you want to implement- Overrides:
calculate
in classWorkerVcfStr
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