Package org.snpeff.stats
Class ChrPosStats
- java.lang.Object
-
- org.snpeff.stats.ChrPosStats
-
- Direct Known Subclasses:
PosStats
public class ChrPosStats extends java.lang.Object
How many changes per position do we have in a chromosome. Summary by dividing the chromosome into MAX_BINS bins- Author:
- pcingola
-
-
Field Summary
Fields Modifier and Type Field Description static boolean
debug
-
Constructor Summary
Constructors Constructor Description ChrPosStats(java.lang.String chrName, int length)
-
Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description int
getCount(int idx)
int
getTotal()
int[]
posArray()
void
sample(int position)
Use 'num' as a sampleint
size()
java.lang.String
toString()
java.lang.String
toStringHistoPlot(java.lang.String title, java.lang.String xAxisLabel, java.lang.String yAxisLabel)
Create a histogram plot using Google charts
-
-
-
Method Detail
-
getCount
public int getCount(int idx)
-
getTotal
public int getTotal()
-
posArray
public int[] posArray()
-
sample
public void sample(int position)
Use 'num' as a sample- Parameters:
num
-
-
size
public int size()
-
toString
public java.lang.String toString()
- Overrides:
toString
in classjava.lang.Object
-
toStringHistoPlot
public java.lang.String toStringHistoPlot(java.lang.String title, java.lang.String xAxisLabel, java.lang.String yAxisLabel)
Create a histogram plot using Google charts- Returns:
-
-