Package org.snpeff.interval
Class ExonSpliceCharacterizer
- java.lang.Object
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- org.snpeff.interval.ExonSpliceCharacterizer
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public class ExonSpliceCharacterizer extends java.lang.Object
Characterize exons based on alternative splicing References: "Alternative splicing and evolution - diversification, exon definition and function" (see Box 1)- Author:
- pablocingolani
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Field Summary
Fields Modifier and Type Field Description static int
MAX_EXONS
static int
SHOW_EVERY
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Constructor Summary
Constructors Constructor Description ExonSpliceCharacterizer(java.lang.String genomeVer)
ExonSpliceCharacterizer(Genome genome)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description CountByType
characterize()
Characterize all exonsvoid
setVerbose(boolean verbose)
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Field Detail
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MAX_EXONS
public static final int MAX_EXONS
- See Also:
- Constant Field Values
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SHOW_EVERY
public static final int SHOW_EVERY
- See Also:
- Constant Field Values
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Constructor Detail
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ExonSpliceCharacterizer
public ExonSpliceCharacterizer(Genome genome)
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ExonSpliceCharacterizer
public ExonSpliceCharacterizer(java.lang.String genomeVer)
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Method Detail
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characterize
public CountByType characterize()
Characterize all exons
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setVerbose
public void setVerbose(boolean verbose)
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