Class TestCasesIntegrationSequenceOntology
- java.lang.Object
-
- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
-
- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationSequenceOntology
-
public class TestCasesIntegrationSequenceOntology extends TestCasesIntegrationBase
Test case for sequence ontology- Author:
- pcingola
-
-
Field Summary
-
Fields inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
debug, ignoreErrors, shiftHgvs, SHOW_EVERY, testsDir, verbose
-
-
Constructor Summary
Constructors Constructor Description TestCasesIntegrationSequenceOntology()
-
Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
test_01_Vep()
void
test_02_Vep()
void
test_03_Vep()
void
test_04_Vep()
void
test_05_Vep()
void
test_06_Vep()
-
Methods inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
appyTranscript, build, buildAndCompare, buildEmbl, buildGeneBank, buildGff3AndCompare, buildGtfAndCompare, checkHgvs, checkNoChange, checkTranscriptError, compareHgvs, compareHgvs, compareVep, compareVepSO, init, loadSnpEffectPredictor, showTranscripts, showTranscripts, snpEffect, snpEffect, snpEffectCancer
-
-
-
-
Method Detail
-
test_01_Vep
public void test_01_Vep() throws java.io.IOException
- Throws:
java.io.IOException
-
test_02_Vep
public void test_02_Vep() throws java.io.IOException
- Throws:
java.io.IOException
-
test_03_Vep
public void test_03_Vep() throws java.io.IOException
- Throws:
java.io.IOException
-
test_04_Vep
public void test_04_Vep() throws java.io.IOException
- Throws:
java.io.IOException
-
test_05_Vep
public void test_05_Vep() throws java.io.IOException
- Throws:
java.io.IOException
-
test_06_Vep
public void test_06_Vep() throws java.io.IOException
- Throws:
java.io.IOException
-
-