Class TestCasesHgvsDnaDupNegative
- java.lang.Object
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- org.snpeff.snpEffect.testCases.unity.TestCasesBase
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- org.snpeff.snpEffect.testCases.unity.TestCasesHgvsDnaDupNegative
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public class TestCasesHgvsDnaDupNegative extends TestCasesBase
Test cases for HGVS's 'dup' on the negative strand
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Field Summary
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Fields inherited from class org.snpeff.snpEffect.testCases.unity.TestCasesBase
addUtrs, chromoBases, chromoSequence, chromosome, codonTable, config, debug, gene, genome, genomeName, maxExons, maxGeneLen, maxTranscripts, minExons, numGenes, onlyMinusStrand, onlyPlusStrand, rand, randSeed, shiftHgvs, snpEffectPredictor, spliceRegionExonSize, spliceRegionIntronMax, spliceRegionIntronMin, transcript, verbose
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Constructor Summary
Constructors Constructor Description TestCasesHgvsDnaDupNegative()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description protected void
init()
void
test_01()
void
test_02()
void
test_03()
Dup on the reverse strand: More than one basevoid
test_04()
Dup on the reverse strand: More than one base-
Methods inherited from class org.snpeff.snpEffect.testCases.unity.TestCasesBase
after, before, checkApply, checkApplyDel, checkApplyIns, checkApplyMixed, checkApplyMnp, checkApplySnp, checkEffect, checkEffect, formatVersion, hasEffect, initRand, initSnpEffPredictor, initSnpEffPredictor, prependSequenceToFirstExon, showTranscripts
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Method Detail
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init
protected void init()
- Overrides:
init
in classTestCasesBase
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test_01
public void test_01()
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test_02
public void test_02()
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test_03
public void test_03()
Dup on the reverse strand: More than one base
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test_04
public void test_04()
Dup on the reverse strand: More than one base
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