Package org.snpeff.binseq.indexer
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Interface Summary Interface Description OverlapFilter<T extends BinarySequence> Indicate whether an overlap between two sequences should be considered or not -
Class Summary Class Description OverlapFilterCompareAllAll Only allow overlaps between sequences mapped to same/different partitionOverlapFilterDnaId Only allow sequences with different IDs to be overlappedOverlapRessult<T extends BinarySequence> An object used to store overlap parametersSequenceIndexer<T extends BinarySequence> A collection of sequences that are indexed using some algorithm Note: The ID is just the position in the array.SuffixIndexerNmer<T extends BinarySequence> Index all suffixes of all the sequences (it indexes using Nmers).