Package org.snpeff.gtex
Class GtexExperiment
- java.lang.Object
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- org.snpeff.gtex.GtexExperiment
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public class GtexExperiment extends java.lang.Object
A 'column' in a GTEx file (values from one experiment- Author:
- pcingola
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Constructor Summary
Constructors Constructor Description GtexExperiment(Gtex gtex, java.lang.String line)
GtexExperiment(Gtex gtex, java.lang.String id, java.lang.String tissueType, java.lang.String tissueTypeDetail)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
add(double value)
Gtex
getGtex()
java.lang.String
getId()
java.lang.String
getTissueType()
java.lang.String
getTissueTypeDetail()
double
getValue(int idx)
double
getValue(java.lang.String geneId)
Get value by geneIDprotected void
parse(java.lang.String line)
int
size()
java.lang.String
toString()
java.lang.String
toStringAll()
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Method Detail
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add
public void add(double value)
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getGtex
public Gtex getGtex()
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getId
public java.lang.String getId()
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getTissueType
public java.lang.String getTissueType()
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getTissueTypeDetail
public java.lang.String getTissueTypeDetail()
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getValue
public double getValue(int idx)
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getValue
public double getValue(java.lang.String geneId)
Get value by geneID- Parameters:
geneId
-- Returns:
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parse
protected void parse(java.lang.String line)
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size
public int size()
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toString
public java.lang.String toString()
- Overrides:
toString
in classjava.lang.Object
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toStringAll
public java.lang.String toStringAll()
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