Uses of Class
org.snpeff.fileIterator.VariantFileIterator
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Packages that use VariantFileIterator Package Description org.snpeff.fileIterator -
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Uses of VariantFileIterator in org.snpeff.fileIterator
Subclasses of VariantFileIterator in org.snpeff.fileIterator Modifier and Type Class Description class
BedFileIterator
Opens a sequence change file and iterates over all intervals in BED format.class
BigBedFileIterator
FileIterator for BigBed features Note: I use Broad's IGV code to do all the work, this is just a wrapperclass
VariantTxtFileIterator
Opens a sequence change file and iterates over all sequence changes TXT Format: Tab-separated format, containing five columns that correspond to: chr \t position \t refSeq \t newSeq \t strand \t quality \t coverage \t id \n Fields strand, quality, coverage and id are optional E.g.
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