Class FindRareAaIntervals


  • public class FindRareAaIntervals
    extends java.lang.Object
    Find intervals where rare amino acids occur
    Author:
    pablocingolani
    • Constructor Detail

      • FindRareAaIntervals

        public FindRareAaIntervals​(Genome genome)
    • Method Detail

      • findRareAa

        public java.util.Collection<RareAminoAcid> findRareAa​(java.lang.String proteinFastaFile)
        Find all sites having rare amino acids
        Parameters:
        proteinFastaFile -
      • getRareThreshold

        public double getRareThreshold()
      • setRareThreshold

        public void setRareThreshold​(double rareThreshold)
      • setVerbose

        public void setVerbose​(boolean verbose)
      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object