Class TestCasesSequenceIndexer


  • public class TestCasesSequenceIndexer
    extends java.lang.Object
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void test_01()
      Sequence comparison test
      void test_02()
      Sequence ordering test
      void test_03()
      Sequence indexer test (add sequences)
      void test_04()
      Sequence indexer test (overlap sequences)
      void test_05()
      Sequence indexer test (trivial assembly)
      void test_06()
      'AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA' bug Sequences with nmers '0' were not being indexed
      void test_07()
      Sequence length = Nmer size (bug) Sequences with same length as nmers were not being indexed properly
      void test_08()
      Sequence "aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa" + "aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaac"
      void test_09()
      Sequence "aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa" + "caaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa"
      void test_10()
      Sequence "aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa" + "caaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaag"
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Field Detail

      • NUMBER_OF_COMPARISSONS

        public static int NUMBER_OF_COMPARISSONS
    • Constructor Detail

      • TestCasesSequenceIndexer

        public TestCasesSequenceIndexer()
    • Method Detail

      • test_01

        public void test_01()
        Sequence comparison test
      • test_02

        public void test_02()
        Sequence ordering test
      • test_03

        public void test_03()
        Sequence indexer test (add sequences)
      • test_04

        public void test_04()
        Sequence indexer test (overlap sequences)
      • test_05

        public void test_05()
        Sequence indexer test (trivial assembly)
      • test_06

        public void test_06()
        'AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA' bug Sequences with nmers '0' were not being indexed
      • test_07

        public void test_07()
        Sequence length = Nmer size (bug) Sequences with same length as nmers were not being indexed properly
      • test_08

        public void test_08()
        Sequence "aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa" + "aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaac"
      • test_09

        public void test_09()
        Sequence "aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa" + "caaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa"
      • test_10

        public void test_10()
        Sequence "aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa" + "caaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaag"