Package org.snpeff.akka.vcf
Class MasterVcf<T>
- java.lang.Object
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- org.snpeff.akka.ConcurrentActor
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- org.snpeff.akka.Master<VcfEntry,T>
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- org.snpeff.akka.vcf.MasterVcf<T>
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Field Summary
Fields Modifier and Type Field Description protected java.lang.String[]
addHeader
protected boolean
parseNow
protected boolean
showHeader
protected VcfFileIterator
vcfFileIterator
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Fields inherited from class org.snpeff.akka.Master
batchSize, completion, countInputObjects, debug, DEFAULT_BATCH_SIZE, DEFAULT_SHOW_EVERY, LOAD_FACTOR, nextOutput, numWorkers, pool, props, sentWorks, showEvery, worksBySerial
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Constructor Summary
Constructors Constructor Description MasterVcf(ConcurrentProperties props, int numWorkers)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description boolean
hasNext()
VcfEntry
next()
Get next itemvoid
setAddHeader(java.lang.String[] addHeader)
void
setShowHeader(boolean showHeader)
protected void
startMaster(StartMaster startMaster)
Start up processing-
Methods inherited from class org.snpeff.akka.Master
get, iterableWork, iterator, output, output, processResults, remove
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Field Detail
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parseNow
protected boolean parseNow
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showHeader
protected boolean showHeader
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addHeader
protected java.lang.String[] addHeader
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vcfFileIterator
protected VcfFileIterator vcfFileIterator
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Constructor Detail
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MasterVcf
public MasterVcf(ConcurrentProperties props, int numWorkers)
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Method Detail
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hasNext
public boolean hasNext()
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setAddHeader
public void setAddHeader(java.lang.String[] addHeader)
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setShowHeader
public void setShowHeader(boolean showHeader)
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startMaster
protected void startMaster(StartMaster startMaster)
Start up processing- Overrides:
startMaster
in classMaster<VcfEntry,T>
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