Class SequenceReference


  • public class SequenceReference
    extends java.lang.Object
    A reference to a sequence. It's composed by a sequence index and a start position (both are integres stored in a long)
    Author:
    pcingola
    • Method Summary

      All Methods Static Methods Concrete Methods 
      Modifier and Type Method Description
      static long getReference​(int sequenceIdx, int start)  
      static int getSeqIdx​(long ref)  
      static int getStart​(long ref)  
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • SequenceReference

        public SequenceReference()
    • Method Detail

      • getReference

        public static long getReference​(int sequenceIdx,
                                        int start)
      • getSeqIdx

        public static int getSeqIdx​(long ref)
      • getStart

        public static int getStart​(long ref)