Package org.snpeff.genotypes
Class Genotypes
- java.lang.Object
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- org.snpeff.genotypes.Genotypes
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- All Implemented Interfaces:
java.io.Serializable
public class Genotypes extends java.lang.Object implements java.io.Serializable
Simple test program- Author:
- pcingola
- See Also:
- Serialized Form
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Field Summary
Fields Modifier and Type Field Description static int
MARK
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Constructor Summary
Constructors Constructor Description Genotypes()
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description static Genotypes
load(java.lang.String fileName)
Read from a fileboolean
loadVcf()
Load datastatic void
main(java.lang.String[] args)
void
parse(java.lang.String[] args)
Parse command line argumentsvoid
save(java.lang.String fileName)
Save to filevoid
set(int entryNum, int sampleNum, VcfGenotype vg)
Set an entry
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Method Detail
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load
public static Genotypes load(java.lang.String fileName)
Read from a file- Parameters:
fileName
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main
public static void main(java.lang.String[] args)
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loadVcf
public boolean loadVcf()
Load data- Returns:
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parse
public void parse(java.lang.String[] args)
Parse command line arguments- Parameters:
args
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save
public void save(java.lang.String fileName)
Save to file- Parameters:
fileName
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set
public void set(int entryNum, int sampleNum, VcfGenotype vg)
Set an entry- Parameters:
entryNum
-sampleNum
-vg
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