Package org.snpeff.snpEffect.factory
Class SnpEffPredictorFactoryEmbl
- java.lang.Object
-
- org.snpeff.snpEffect.factory.SnpEffPredictorFactory
-
- org.snpeff.snpEffect.factory.SnpEffPredictorFactoryFeatures
-
- org.snpeff.snpEffect.factory.SnpEffPredictorFactoryEmbl
-
public class SnpEffPredictorFactoryEmbl extends SnpEffPredictorFactoryFeatures
This class creates a SnpEffectPredictor from an Embl file.- Author:
- pcingola
-
-
Field Summary
Fields Modifier and Type Field Description static java.lang.String
EXTENSION_EMBL
-
Fields inherited from class org.snpeff.snpEffect.factory.SnpEffPredictorFactoryFeatures
OFFSET
-
Fields inherited from class org.snpeff.snpEffect.factory.SnpEffPredictorFactory
MARK, MIN_TOTAL_FRAME_COUNT
-
-
Constructor Summary
Constructors Constructor Description SnpEffPredictorFactoryEmbl(Config config)
SnpEffPredictorFactoryEmbl(Config config, java.lang.String emblFileName)
-
Method Summary
-
Methods inherited from class org.snpeff.snpEffect.factory.SnpEffPredictorFactoryFeatures
addFeatures, create, geneId, geneName, getProteinByTrId
-
Methods inherited from class org.snpeff.snpEffect.factory.SnpEffPredictorFactory
add, add, add, add, add, add, addMarker, addSequences, adjustChromosomes, adjustTranscripts, beforeExonSequences, codingFromCds, collapseZeroLenIntrons, createRandSequences, deleteRedundant, exonsFromCds, exonsFromCds, findGene, findGene, findMarker, findTranscript, findTranscript, getOrCreateChromosome, parsePosition, readExonSequences, replaceTranscript, setCreateRandSequences, setDebug, setFastaFile, setFileName, setRandom, setReadSequences, setStoreSequences, setVerbose, showChromoNamesDifferences
-
-
-
-
Field Detail
-
EXTENSION_EMBL
public static final java.lang.String EXTENSION_EMBL
- See Also:
- Constant Field Values
-
-