Class MicroCosmEntry
- java.lang.Object
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- org.snpeff.fileIterator.microCosm.MicroCosmEntry
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public class MicroCosmEntry extends java.lang.Object
Entry in a MicroCosm (miRNA target prediction) file- Author:
- pablocingolani
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Field Summary
Fields Modifier and Type Field Description java.lang.String
chr
int
end
java.lang.String
externalName
java.lang.String
feature
java.lang.String
group
java.lang.String
method
java.lang.String
miRnaName
java.lang.String
phase
double
pValue
double
score
int
start
java.lang.String
strand
java.lang.String
transcriptId
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Constructor Summary
Constructors Constructor Description MicroCosmEntry()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description MicroRnaBindingSite
getMarker(Genome genome)
Create a MicroRnaBindingSite markerjava.lang.String
toString()
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Field Detail
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group
public java.lang.String group
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miRnaName
public java.lang.String miRnaName
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method
public java.lang.String method
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feature
public java.lang.String feature
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chr
public java.lang.String chr
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start
public int start
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end
public int end
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strand
public java.lang.String strand
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phase
public java.lang.String phase
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score
public double score
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pValue
public double pValue
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transcriptId
public java.lang.String transcriptId
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externalName
public java.lang.String externalName
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Method Detail
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getMarker
public MicroRnaBindingSite getMarker(Genome genome)
Create a MicroRnaBindingSite marker- Returns:
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toString
public java.lang.String toString()
- Overrides:
toString
in classjava.lang.Object
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