Class NextProtParserV2


  • public class NextProtParserV2
    extends NextProtParser
    Parse NetxProt XML file (version 2) http://www.nextprot.org/
    Author:
    pablocingolani
    • Field Detail

      • NODE_NAME_ANNOTATION_CATEGORY

        protected java.lang.String NODE_NAME_ANNOTATION_CATEGORY
      • ATTR_NAME_POSITION

        protected java.lang.String ATTR_NAME_POSITION
    • Constructor Detail

      • NextProtParserV2

        public NextProtParserV2​(Config config)
    • Method Detail

      • getAaEnd

        protected int getAaEnd​(org.w3c.dom.Node posNode)
        Get AA end position from position node
        Overrides:
        getAaEnd in class NextProtParser
      • getAaStart

        protected int getAaStart​(org.w3c.dom.Node posNode)
        Get AA start position from position node
        Overrides:
        getAaStart in class NextProtParser