Uses of Class
org.snpeff.outputFormatter.OutputFormatter
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Packages that use OutputFormatter Package Description org.snpeff.outputFormatter org.snpeff.snpEffect.commandLine.eff -
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Uses of OutputFormatter in org.snpeff.outputFormatter
Subclasses of OutputFormatter in org.snpeff.outputFormatter Modifier and Type Class Description class
BedAnnotationOutputFormatter
Formats: Show all annotations that intersect the BED input file.class
BedOutputFormatter
Formats output as BED file Referneces: http://genome.ucsc.edu/FAQ/FAQformat.html#format1class
VcfOutputFormatter
Formats output as VCFMethods in org.snpeff.outputFormatter that return OutputFormatter Modifier and Type Method Description OutputFormatter
OutputFormatter. clone()
OutputFormatter
VcfOutputFormatter. clone()
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Uses of OutputFormatter in org.snpeff.snpEffect.commandLine.eff
Constructors in org.snpeff.snpEffect.commandLine.eff with parameters of type OutputFormatter Constructor Description MasterEff(int numWorkers, SnpEffCmdEff snpEffCmdEff, SnpEffectPredictor snpEffectPredictor, OutputFormatter outputFormatter, IntervalForest filterIntervals)
WorkerEff(SnpEffCmdEff snpEffCmdEff, SnpEffectPredictor snpEffectPredictor, OutputFormatter outputFormatter, IntervalForest filterIntervals)
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