Snakemake
5.2.1

Getting started

  • Installation
  • Examples
  • Snakemake Tutorial

Executing workflows

  • Executing Snakemake

Defining workflows

  • Writing Workflows
  • Rules
  • Configuration
  • Modularization
  • Remote files
  • Utils
  • Distribution and Reproducibility
  • Reports

API Reference

  • The Snakemake API
  • Additional utils

Project Info

  • Citing and Citations
  • More Resources
  • Frequently Asked Questions
  • Contributing
  • Credits
  • Change Log
  • License
Snakemake
  • Docs »
  • Index

Index

A | F | L | M | Q | R | S | U | V

A

  • AlwaysQuotedFormatter (class in snakemake.utils)
  • available_cpu_count() (in module snakemake.utils)

F

  • format() (in module snakemake.utils)
  • format_element() (snakemake.utils.SequenceFormatter method)

L

  • linecount() (in module snakemake.utils)
  • listfiles() (in module snakemake.utils)

M

  • makedirs() (in module snakemake.utils)
  • min_version() (in module snakemake.utils)

Q

  • QuotedFormatter (class in snakemake.utils)

R

  • R() (in module snakemake.utils)
  • read_job_properties() (in module snakemake.utils)
  • report() (in module snakemake.utils)

S

  • SequenceFormatter (class in snakemake.utils)
  • simplify_path() (in module snakemake.utils)
  • snakemake() (in module snakemake)
  • snakemake.utils (module)

U

  • update_config() (in module snakemake.utils)

V

  • validate() (in module snakemake.utils)

© Copyright 2014-2018, Johannes Koester.

Built with Sphinx using a theme provided by Read the Docs.