Here is a list of all documented class members with links to the class documentation for each member:
- o -
- off_type()
: input_stream_over
, output_stream_over
- offset_char
: seqan3::phred42
, seqan3::phred63
, seqan3::phred68solexa
, seqan3::phred94
- offset_phred
: seqan3::phred42
, seqan3::phred63
, seqan3::phred68solexa
, seqan3::phred94
- offset_type
: seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
, seqan3::structure_file_input_default_traits_rna
, structure_file_input_traits
- on_result()
: seqan3::align_cfg::on_result< callback_t >
, seqan3::search_cfg::on_result< callback_t >
- open_score
: seqan3::align_cfg::gap_cost_affine
- operation
: seqan3::cigar
- operator alphabet_type()
: seqan3::alphabet_proxy< derived_type, alphabet_type >
- operator std::string()
: seqan3::small_string< capacity_ >
- operator std::string_view()
: seqan3::small_string< capacity_ >
- operator!=
: seqan3::algorithm_result_generator_range< algorithm_executor_type >::algorithm_range_iterator
, seqan3::aligned_allocator< value_t, alignment_v >
, seqan3::alphabet_base< derived_type, size, char_t >
, seqan3::alphabet_proxy< derived_type, alphabet_type >
, seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
, seqan3::bi_fm_index_cursor< index_t >
, seqan3::bitpacked_sequence< alphabet_type >
, seqan3::common_tuple< Types >
, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
, seqan3::dynamic_bitset< bit_capacity >
, seqan3::fm_index_cursor< index_t >
, seqan3::gap_decorator< inner_type >
, seqan3::interleaved_bloom_filter< data_layout_mode_ >::membership_agent_type::binning_bitvector
, seqan3::pod_tuple< type0 >
, seqan3::pod_tuple< type0, types... >
, seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
, seqan3::small_vector< value_type_, capacity_ >
, seqan3::suffix_array_interval
- operator""_aa10li()
: seqan3::aa10li
- operator""_aa10murphy()
: seqan3::aa10murphy
- operator""_aa20()
: seqan3::aa20
- operator""_aa27()
: seqan3::aa27
- operator""_cigar_operation()
: seqan3::cigar
- operator""_db3()
: seqan3::dot_bracket3
- operator""_dna15()
: seqan3::dna15
- operator""_dna16sam()
: seqan3::dna16sam
- operator""_dna3bs()
: seqan3::dna3bs
- operator""_dna4()
: seqan3::dna4
- operator""_dna5()
: seqan3::dna5
- operator""_dssp9()
: seqan3::dssp9
- operator""_phred42()
: seqan3::phred42
- operator""_phred63()
: seqan3::phred63
- operator""_phred68solexa()
: seqan3::phred68solexa
- operator""_phred94()
: seqan3::phred94
- operator""_rna15()
: seqan3::rna15
- operator""_rna4()
: seqan3::rna4
- operator""_rna5()
: seqan3::rna5
- operator""_shape()
: seqan3::shape
- operator""_tag()
: seqan3::sam_tag_dictionary
- operator""_wuss51()
: seqan3::wuss< SIZE >
- operator&()
: enum_bitwise_operators
- operator&=()
: enum_bitwise_operators
, seqan3::dynamic_bitset< bit_capacity >
- operator()()
: seqan3::arithmetic_range_validator< option_value_t >
, seqan3::file_validator_base
, seqan3::input_directory_validator
, seqan3::input_file_validator< file_t >
, seqan3::output_directory_validator
, seqan3::output_file_validator< file_t >
, seqan3::regex_validator
, seqan3::value_list_validator< option_value_t >
, std::hash< alphabet_t >
, std::hash< seqan3::dynamic_bitset< cap > >
, std::hash< urng_t >
, validator
- operator*()
: seqan3::algorithm_result_generator_range< algorithm_executor_type >::algorithm_range_iterator
- operator+
: seqan3::small_string< capacity_ >
- operator++()
: seqan3::algorithm_result_generator_range< algorithm_executor_type >::algorithm_range_iterator
- operator+=()
: seqan3::counting_vector< value_t >
- operator-=()
: seqan3::counting_vector< value_t >
- operator->()
: seqan3::algorithm_result_generator_range< algorithm_executor_type >::algorithm_range_iterator
- operator<
: seqan3::alphabet_base< derived_type, size, char_t >
, seqan3::bitpacked_sequence< alphabet_type >
, seqan3::common_tuple< Types >
, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
, seqan3::dynamic_bitset< bit_capacity >
, seqan3::gap_decorator< inner_type >
, seqan3::pod_tuple< type0 >
, seqan3::pod_tuple< type0, types... >
, seqan3::small_vector< value_type_, capacity_ >
- operator<<()
: output_stream_over
, seqan3::debug_stream_type< char_t >
, seqan3::dynamic_bitset< bit_capacity >
, seqan3::small_string< capacity_ >
- operator<<=()
: seqan3::dynamic_bitset< bit_capacity >
- operator<=
: seqan3::alphabet_base< derived_type, size, char_t >
, seqan3::bitpacked_sequence< alphabet_type >
, seqan3::common_tuple< Types >
, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
, seqan3::dynamic_bitset< bit_capacity >
, seqan3::gap_decorator< inner_type >
, seqan3::pod_tuple< type0 >
, seqan3::pod_tuple< type0, types... >
, seqan3::small_vector< value_type_, capacity_ >
- operator<=>
: seqan3::common_tuple< Types >
- operator=()
: seqan3::aa10li
, seqan3::aa10murphy
, seqan3::aa20
, seqan3::aa27
, seqan3::algorithm_result_generator_range< algorithm_executor_type >::algorithm_range_iterator
, seqan3::algorithm_result_generator_range< algorithm_executor_type >
, seqan3::align_cfg::band_fixed_size
, seqan3::align_cfg::gap_cost_affine
, seqan3::align_cfg::method_global
, seqan3::align_cfg::method_local
, seqan3::align_cfg::min_score
, seqan3::align_cfg::on_result< callback_t >
, seqan3::align_cfg::output_alignment
, seqan3::align_cfg::output_begin_position
, seqan3::align_cfg::output_end_position
, seqan3::align_cfg::output_score
, seqan3::align_cfg::output_sequence1_id
, seqan3::align_cfg::output_sequence2_id
, seqan3::align_cfg::score_type< score_t >
, seqan3::align_cfg::scoring_scheme< scoring_scheme_t >
, seqan3::align_cfg::vectorised
, seqan3::aligned_allocator< value_t, alignment_v >
, seqan3::alignment_result< alignment_result_value_t >
, seqan3::alphabet_base< derived_type, size, char_t >
, seqan3::argument_parser
, seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
, seqan3::bi_fm_index_cursor< index_t >
, seqan3::bitpacked_sequence< alphabet_type >
, seqan3::bloom_filter< data_layout_mode_ >
, seqan3::cigar
, seqan3::common_pair< T1, T2 >
, seqan3::common_tuple< Types >
, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
, seqan3::configuration< configs_t >
, seqan3::counting_vector< value_t >
, seqan3::debug_stream_type< char_t >
, seqan3::dna15
, seqan3::dna16sam
, seqan3::dna3bs
, seqan3::dna4
, seqan3::dna5
, seqan3::dot_bracket3
, seqan3::dssp9
, seqan3::dynamic_bitset< bit_capacity >
, seqan3::exposition_only::cigar_operation
, seqan3::file_validator_base
, seqan3::fm_index_cursor< index_t >
, seqan3::format_bam
, seqan3::format_embl
, seqan3::format_fasta
, seqan3::format_fastq
, seqan3::format_genbank
, seqan3::format_sam
, seqan3::format_vienna
, seqan3::gap
, seqan3::gap_decorator< inner_type >
, seqan3::input_directory_validator
, seqan3::input_file_validator< file_t >
, seqan3::interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >
, seqan3::interleaved_bloom_filter< data_layout_mode_ >::membership_agent_type::binning_bitvector
, seqan3::interleaved_bloom_filter< data_layout_mode_ >::membership_agent_type
, seqan3::interleaved_bloom_filter< data_layout_mode_ >
, seqan3::mask
, seqan3::masked< sequence_alphabet_t >
, seqan3::output_directory_validator
, seqan3::output_file_validator< file_t >
, seqan3::phred42
, seqan3::phred63
, seqan3::phred68solexa
, seqan3::phred94
, seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >
, seqan3::record< field_types, field_ids >
, seqan3::rna15
, seqan3::rna4
, seqan3::rna5
, seqan3::sam_file_header< ref_ids_type >
, seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
, seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >
, seqan3::sam_record< field_types, field_ids >
, seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
, seqan3::search_cfg::hit
, seqan3::search_cfg::hit_all
, seqan3::search_cfg::hit_all_best
, seqan3::search_cfg::hit_single_best
, seqan3::search_cfg::hit_strata
, seqan3::search_cfg::max_error_deletion
, seqan3::search_cfg::max_error_insertion
, seqan3::search_cfg::max_error_substitution
, seqan3::search_cfg::max_error_total
, seqan3::search_cfg::on_result< callback_t >
, seqan3::search_cfg::output_index_cursor
, seqan3::search_cfg::output_query_id
, seqan3::search_cfg::output_reference_begin_position
, seqan3::search_cfg::output_reference_id
, seqan3::semialphabet_any< size >
, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >
, seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >
, seqan3::sequence_record< field_types, field_ids >
, seqan3::shape
, seqan3::small_string< capacity_ >
, seqan3::small_vector< value_type_, capacity_ >
, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
, seqan3::structure_file_output< selected_field_ids_, valid_formats_ >
, seqan3::structure_record< field_types, field_ids >
, seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >
, seqan3::value_list_validator< option_value_t >
, seqan3::views::deep< underlying_adaptor_t >
, seqan3::wuss< SIZE >
- operator==
: seqan3::algorithm_result_generator_range< algorithm_executor_type >::algorithm_range_iterator
, seqan3::aligned_allocator< value_t, alignment_v >
, seqan3::alphabet_base< derived_type, size, char_t >
, seqan3::alphabet_proxy< derived_type, alphabet_type >
, seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
, seqan3::bi_fm_index_cursor< index_t >
, seqan3::bitpacked_sequence< alphabet_type >
, seqan3::common_tuple< Types >
, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
, seqan3::dynamic_bitset< bit_capacity >
, seqan3::fm_index_cursor< index_t >
, seqan3::gap_decorator< inner_type >
, seqan3::interleaved_bloom_filter< data_layout_mode_ >::membership_agent_type::binning_bitvector
, seqan3::pod_tuple< type0 >
, seqan3::pod_tuple< type0, types... >
, seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
, seqan3::small_vector< value_type_, capacity_ >
, seqan3::suffix_array_interval
- operator>
: seqan3::alphabet_base< derived_type, size, char_t >
, seqan3::bitpacked_sequence< alphabet_type >
, seqan3::common_tuple< Types >
, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
, seqan3::dynamic_bitset< bit_capacity >
, seqan3::gap_decorator< inner_type >
, seqan3::pod_tuple< type0 >
, seqan3::pod_tuple< type0, types... >
, seqan3::small_vector< value_type_, capacity_ >
- operator>=
: seqan3::alphabet_base< derived_type, size, char_t >
, seqan3::bitpacked_sequence< alphabet_type >
, seqan3::common_tuple< Types >
, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
, seqan3::dynamic_bitset< bit_capacity >
, seqan3::gap_decorator< inner_type >
, seqan3::pod_tuple< type0 >
, seqan3::pod_tuple< type0, types... >
, seqan3::small_vector< value_type_, capacity_ >
- operator>>()
: input_stream_over
, seqan3::dynamic_bitset< bit_capacity >
, seqan3::small_string< capacity_ >
- operator>>=()
: seqan3::dynamic_bitset< bit_capacity >
- operator[]()
: seqan3::bitpacked_sequence< alphabet_type >
, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
, seqan3::dynamic_bitset< bit_capacity >
, seqan3::gap_decorator< inner_type >
, seqan3::interleaved_bloom_filter< data_layout_mode_ >::membership_agent_type::binning_bitvector
, seqan3::small_vector< value_type_, capacity_ >
- operator^()
: enum_bitwise_operators
- operator^=()
: enum_bitwise_operators
, seqan3::dynamic_bitset< bit_capacity >
- operator|()
: enum_bitwise_operators
- operator|=()
: enum_bitwise_operators
, seqan3::dynamic_bitset< bit_capacity >
- operator~()
: enum_bitwise_operators
, seqan3::dynamic_bitset< bit_capacity >
- option_declared_multiple_times()
: seqan3::option_declared_multiple_times
- option_value_type
: seqan3::arithmetic_range_validator< option_value_t >
, seqan3::file_validator_base
, seqan3::input_directory_validator
, seqan3::input_file_validator< file_t >
, seqan3::output_directory_validator
, seqan3::output_file_validator< file_t >
, seqan3::regex_validator
, seqan3::value_list_validator< option_value_t >
, validator
- options
: seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >
, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
- other
: seqan3::aligned_allocator< value_t, alignment_v >::rebind< new_value_type >
- other_alignment
: seqan3::aligned_allocator< value_t, alignment_v >::rebind< new_value_type >
- output_alignment()
: seqan3::align_cfg::output_alignment
- output_begin_position()
: seqan3::align_cfg::output_begin_position
- output_directory_validator()
: seqan3::output_directory_validator
- output_end_position()
: seqan3::align_cfg::output_end_position
- output_file_validator()
: seqan3::output_file_validator< file_t >
- output_index_cursor()
: seqan3::search_cfg::output_index_cursor
- output_query_id()
: seqan3::search_cfg::output_query_id
- output_reference_begin_position()
: seqan3::search_cfg::output_reference_begin_position
- output_reference_id()
: seqan3::search_cfg::output_reference_id
- output_score()
: seqan3::align_cfg::output_score
- output_sequence1_id()
: seqan3::align_cfg::output_sequence1_id
- output_sequence2_id()
: seqan3::align_cfg::output_sequence2_id