java.io.Serializable
public class LineageSequence
extends edu.msu.cme.rdp.readseq.readers.Sequence
Constructor | Description |
---|---|
LineageSequence(java.lang.String n,
java.util.List<java.lang.String> al,
java.lang.String seq) |
Creates new ParsedRawSequence.
|
Modifier and Type | Method | Description |
---|---|---|
java.util.List<java.lang.String> |
getAncestors() |
Returns the list of the ancestor taxa, with the highest ranked taxon first.
|
java.lang.String |
getDesc() |
|
edu.msu.cme.rdp.readseq.utils.orientation.GoodWordIterator |
getPartialSeqIteratorbyGoodBases(int num_good_bases) |
public LineageSequence(java.lang.String n, java.util.List<java.lang.String> al, java.lang.String seq)
public java.util.List<java.lang.String> getAncestors()
public java.lang.String getDesc()
getDesc
in class edu.msu.cme.rdp.readseq.readers.Sequence
public edu.msu.cme.rdp.readseq.utils.orientation.GoodWordIterator getPartialSeqIteratorbyGoodBases(int num_good_bases) throws java.io.IOException
java.io.IOException