getBestClasspath
public java.util.List<ValidationClassificationResult> getBestClasspath(edu.msu.cme.rdp.readseq.utils.orientation.GoodWordIterator iterator,
java.util.HashMap<java.lang.String,HierarchyTree> nodeMap,
boolean useSeed,
int min_bootstrap_words)
throws java.io.IOException
For each sequence, find the best class among the list of genera using all the overlapping words.
Then select a subset of words to get the assignment, repeats 100 times, count the number of votes
- Throws:
java.io.IOException