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RDKit
Open-source cheminformatics and machine learning.
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a class for efficiently storing sparse vectors of ints More...
#include <SparseIntVect.h>
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typedef std::map< IndexType, int > | StorageType |
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SparseIntVect () | |
SparseIntVect (IndexType length) | |
initialize with a particular length More... | |
SparseIntVect (const SparseIntVect< IndexType > &other) | |
Copy constructor. More... | |
SparseIntVect (const std::string &pkl) | |
constructor from a pickle More... | |
SparseIntVect (const char *pkl, const unsigned int len) | |
constructor from a pickle More... | |
SparseIntVect & | operator= (const SparseIntVect< IndexType > &other) |
~SparseIntVect ()=default | |
destructor (doesn't need to do anything) More... | |
int | getVal (IndexType idx) const |
return the value at an index More... | |
void | setVal (IndexType idx, int val) |
set the value at an index More... | |
int | operator[] (IndexType idx) const |
support indexing using [] More... | |
IndexType | getLength () const |
returns the length More... | |
int | getTotalVal (bool doAbs=false) const |
unsigned int | size () const |
returns the length More... | |
const StorageType & | getNonzeroElements () const |
returns our nonzero elements as a map(IndexType->int) More... | |
SparseIntVect< IndexType > & | operator&= (const SparseIntVect< IndexType > &other) |
const SparseIntVect< IndexType > | operator& (const SparseIntVect< IndexType > &other) const |
SparseIntVect< IndexType > & | operator|= (const SparseIntVect< IndexType > &other) |
const SparseIntVect< IndexType > | operator| (const SparseIntVect< IndexType > &other) const |
SparseIntVect< IndexType > & | operator+= (const SparseIntVect< IndexType > &other) |
const SparseIntVect< IndexType > | operator+ (const SparseIntVect< IndexType > &other) const |
SparseIntVect< IndexType > & | operator-= (const SparseIntVect< IndexType > &other) |
const SparseIntVect< IndexType > | operator- (const SparseIntVect< IndexType > &other) const |
SparseIntVect< IndexType > & | operator*= (int v) |
SparseIntVect< IndexType > & | operator* (int v) |
SparseIntVect< IndexType > & | operator/= (int v) |
SparseIntVect< IndexType > & | operator/ (int v) |
SparseIntVect< IndexType > & | operator+= (int v) |
SparseIntVect< IndexType > & | operator+ (int v) |
SparseIntVect< IndexType > & | operator-= (int v) |
SparseIntVect< IndexType > & | operator- (int v) |
bool | operator== (const SparseIntVect< IndexType > &v2) const |
bool | operator!= (const SparseIntVect< IndexType > &v2) const |
std::string | toString () const |
returns a binary string representation (pickle) More... | |
void | fromString (const std::string &txt) |
a class for efficiently storing sparse vectors of ints
Definition at line 28 of file SparseIntVect.h.
typedef std::map<IndexType, int> RDKit::SparseIntVect< IndexType >::StorageType |
Definition at line 30 of file SparseIntVect.h.
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Definition at line 32 of file SparseIntVect.h.
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initialize with a particular length
Definition at line 35 of file SparseIntVect.h.
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Copy constructor.
Definition at line 38 of file SparseIntVect.h.
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constructor from a pickle
Definition at line 45 of file SparseIntVect.h.
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constructor from a pickle
Definition at line 49 of file SparseIntVect.h.
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destructor (doesn't need to do anything)
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Definition at line 357 of file SparseIntVect.h.
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returns the length
Definition at line 110 of file SparseIntVect.h.
Referenced by RDKit::DiceSimilarity(), RDKit::SparseIntVect< IndexType >::size(), and RDKit::TverskySimilarity().
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returns our nonzero elements as a map(IndexType->int)
Definition at line 129 of file SparseIntVect.h.
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returns the sum of all the elements in the vect the doAbs argument toggles summing the absolute values of the elements
Definition at line 114 of file SparseIntVect.h.
Referenced by RDKit::DiceSimilarity().
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return the value at an index
Definition at line 77 of file SparseIntVect.h.
Referenced by RDKit::SparseIntVect< IndexType >::operator[](), and RDKit::updateFromSequence().
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Definition at line 330 of file SparseIntVect.h.
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Definition at line 164 of file SparseIntVect.h.
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this is a "fuzzy" intesection, the final value of each element is equal to the minimum from the two vects.
Definition at line 134 of file SparseIntVect.h.
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Definition at line 283 of file SparseIntVect.h.
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Definition at line 275 of file SparseIntVect.h.
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Definition at line 236 of file SparseIntVect.h.
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Definition at line 307 of file SparseIntVect.h.
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Definition at line 208 of file SparseIntVect.h.
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Definition at line 299 of file SparseIntVect.h.
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Definition at line 270 of file SparseIntVect.h.
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Definition at line 319 of file SparseIntVect.h.
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Definition at line 242 of file SparseIntVect.h.
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Definition at line 311 of file SparseIntVect.h.
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Definition at line 295 of file SparseIntVect.h.
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Definition at line 287 of file SparseIntVect.h.
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Definition at line 53 of file SparseIntVect.h.
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Definition at line 324 of file SparseIntVect.h.
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support indexing using []
Definition at line 107 of file SparseIntVect.h.
References RDKit::SparseIntVect< IndexType >::getVal().
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Definition at line 202 of file SparseIntVect.h.
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this is a "fuzzy" union, the final value of each element is equal to the maximum from the two vects.
Definition at line 173 of file SparseIntVect.h.
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set the value at an index
Definition at line 90 of file SparseIntVect.h.
Referenced by RDKit::updateFromSequence().
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returns the length
Definition at line 126 of file SparseIntVect.h.
References RDKit::SparseIntVect< IndexType >::getLength().
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returns a binary string representation (pickle)
Definition at line 335 of file SparseIntVect.h.
References ci_SPARSEINTVECT_VERSION, and RDKit::streamWrite().