![]() |
RDKit
Open-source cheminformatics and machine learning.
|
a class for efficiently storing sparse vectors of ints More...
#include <SparseIntVect.h>
Public Types | |
typedef std::map< IndexType, int > | StorageType |
Public Member Functions | |
SparseIntVect () | |
SparseIntVect (IndexType length) | |
initialize with a particular length More... | |
SparseIntVect (const SparseIntVect< IndexType > &other) | |
Copy constructor. More... | |
SparseIntVect (const std::string &pkl) | |
constructor from a pickle More... | |
SparseIntVect (const char *pkl, const unsigned int len) | |
constructor from a pickle More... | |
~SparseIntVect () | |
destructor (doesn't need to do anything) More... | |
int | getVal (IndexType idx) const |
return the value at an index More... | |
void | setVal (IndexType idx, int val) |
set the value at an index More... | |
int | operator[] (IndexType idx) const |
support indexing using [] More... | |
IndexType | getLength () const |
returns the length More... | |
int | getTotalVal (bool doAbs=false) const |
unsigned int | size () const |
returns the length More... | |
const StorageType & | getNonzeroElements () const |
returns our nonzero elements as a map(IndexType->int) More... | |
SparseIntVect< IndexType > & | operator &= (const SparseIntVect< IndexType > &other) |
const SparseIntVect< IndexType > | operator & (const SparseIntVect< IndexType > &other) const |
SparseIntVect< IndexType > & | operator|= (const SparseIntVect< IndexType > &other) |
const SparseIntVect< IndexType > | operator| (const SparseIntVect< IndexType > &other) const |
SparseIntVect< IndexType > & | operator+= (const SparseIntVect< IndexType > &other) |
const SparseIntVect< IndexType > | operator+ (const SparseIntVect< IndexType > &other) const |
SparseIntVect< IndexType > & | operator-= (const SparseIntVect< IndexType > &other) |
const SparseIntVect< IndexType > | operator- (const SparseIntVect< IndexType > &other) const |
SparseIntVect< IndexType > & | operator*= (int v) |
SparseIntVect< IndexType > & | operator* (int v) |
SparseIntVect< IndexType > & | operator/= (int v) |
SparseIntVect< IndexType > & | operator/ (int v) |
SparseIntVect< IndexType > & | operator+= (int v) |
SparseIntVect< IndexType > & | operator+ (int v) |
SparseIntVect< IndexType > & | operator-= (int v) |
SparseIntVect< IndexType > & | operator- (int v) |
bool | operator== (const SparseIntVect< IndexType > &v2) const |
bool | operator!= (const SparseIntVect< IndexType > &v2) const |
std::string | toString () const |
returns a binary string representation (pickle) More... | |
void | fromString (const std::string &txt) |
a class for efficiently storing sparse vectors of ints
Definition at line 27 of file SparseIntVect.h.
typedef std::map<IndexType, int> RDKit::SparseIntVect< IndexType >::StorageType |
Definition at line 29 of file SparseIntVect.h.
|
inline |
Definition at line 31 of file SparseIntVect.h.
|
inline |
initialize with a particular length
Definition at line 34 of file SparseIntVect.h.
|
inline |
Copy constructor.
Definition at line 37 of file SparseIntVect.h.
|
inline |
constructor from a pickle
Definition at line 43 of file SparseIntVect.h.
|
inline |
constructor from a pickle
Definition at line 47 of file SparseIntVect.h.
|
inline |
destructor (doesn't need to do anything)
Definition at line 52 of file SparseIntVect.h.
|
inline |
Definition at line 345 of file SparseIntVect.h.
References PRECONDITION, and RDKit::streamRead().
|
inline |
returns the length
Definition at line 98 of file SparseIntVect.h.
Referenced by RDKit::DiceSimilarity(), RDKit::SparseIntVect< IndexType >::size(), RDKit::TverskySimilarity(), and RDKit::updateFromSequence().
|
inline |
returns our nonzero elements as a map(IndexType->int)
Definition at line 117 of file SparseIntVect.h.
Referenced by RDKit::updateFromSequence().
|
inline |
returns the sum of all the elements in the vect the doAbs argument toggles summing the absolute values of the elements
Definition at line 102 of file SparseIntVect.h.
Referenced by RDKit::DiceSimilarity().
|
inline |
return the value at an index
Definition at line 65 of file SparseIntVect.h.
Referenced by RDKit::SparseIntVect< IndexType >::operator[](), and RDKit::updateFromSequence().
|
inline |
Definition at line 152 of file SparseIntVect.h.
|
inline |
this is a "fuzzy" intesection, the final value of each element is equal to the minimum from the two vects.
Definition at line 122 of file SparseIntVect.h.
|
inline |
Definition at line 318 of file SparseIntVect.h.
|
inline |
Definition at line 271 of file SparseIntVect.h.
|
inline |
Definition at line 263 of file SparseIntVect.h.
|
inline |
Definition at line 224 of file SparseIntVect.h.
|
inline |
Definition at line 295 of file SparseIntVect.h.
|
inline |
Definition at line 196 of file SparseIntVect.h.
|
inline |
Definition at line 287 of file SparseIntVect.h.
|
inline |
Definition at line 258 of file SparseIntVect.h.
|
inline |
Definition at line 307 of file SparseIntVect.h.
|
inline |
Definition at line 230 of file SparseIntVect.h.
|
inline |
Definition at line 299 of file SparseIntVect.h.
|
inline |
Definition at line 283 of file SparseIntVect.h.
|
inline |
Definition at line 275 of file SparseIntVect.h.
|
inline |
Definition at line 312 of file SparseIntVect.h.
|
inline |
support indexing using []
Definition at line 95 of file SparseIntVect.h.
References RDKit::SparseIntVect< IndexType >::getVal().
|
inline |
Definition at line 190 of file SparseIntVect.h.
|
inline |
this is a "fuzzy" union, the final value of each element is equal to the maximum from the two vects.
Definition at line 161 of file SparseIntVect.h.
|
inline |
set the value at an index
Definition at line 78 of file SparseIntVect.h.
Referenced by RDKit::updateFromSequence().
|
inline |
returns the length
Definition at line 114 of file SparseIntVect.h.
References RDKit::SparseIntVect< IndexType >::getLength().
|
inline |
returns a binary string representation (pickle)
Definition at line 323 of file SparseIntVect.h.
References ci_SPARSEINTVECT_VERSION, and RDKit::streamWrite().