aggregateRanks | Aggregate ranked lists |
betaScores | Calculate beta scores |
cellCycleKO | A dataset based on Reimand _et al_ and Hu _et al_. It contains lists yeast genes that were most influenced by 12 cell cycle related transcription factor knockouts. The dataset is a list with 3 slots 1. 'gl' - set of gene lists in a format suitable for 'aggregateRanks'; 2. 'N' - number of yeast genes; 3. 'ref' - reference list of cell cycle related genes taken from de Lichtenberg _et al_. |
rankMatrix | Create rank matrix |
rhoScores | Calculate rho scores |
RobustRankAggreg | Aggregate ranked lists |