biocViews-package | Categorized views of R package repositories |
BiocView-class | Class "BiocView" |
biocViews | Categorized views of R package repositories |
biocViewsVocab | Bioconductor Task Views Vocabulary Data |
bvPackageTable-class | Class "BiocView" |
bvParentViews-class | Class "BiocView" |
bvSubViews-class | Class "BiocView" |
bvTitle-class | Class "BiocView" |
coerce-method | Class "BiocView" |
extractCitations | Extract Rd man pages and build pdf reference manuals from local package repository |
extractHTMLDocuments | Extract pdf vignettes from local package repository |
extractManuals | Extract Rd man pages and build pdf reference manuals from local package repository |
extractNEWS | Extract NEWS files from source package tarballs |
extractTopLevelFiles | Extract files from the top level of source package tarballs |
extractVignettes | Extract pdf vignettes from local package repository |
genReposControlFiles | Generate CRAN-style repository control files |
getBiocSubViews | Build a list of BiocView objects from a package repository |
getBiocViews | Build a list of BiocView objects from a package repository |
getCurrentbiocViews | Get a list of biocViews for each branch |
getPackageDescriptions | Retrieve list of package titles and print package Description |
getPackageNEWS | Retrieve and print package NEWS |
getPackageTitles | Retrieve list of package titles and print package Description |
getPacksAndViews | Parse VIEWS file for views and packages |
getSubTerms | Retrieve a term and its children from a vocab DAG |
guessPackageType | Guess Package Type (Software, ExperimentData, AnnotationData) using existing biocViews. |
htmlDoc | Create a complete HTML document representation of an object |
htmlDoc-method | Class "BiocView" |
htmlDoc-method | Class "Htmlized" |
htmlDoc-method | Class "PackageDetail" |
htmlDoc-method | Class "RepositoryDetail" |
htmlFilename | Return a filename for an object's HTML representation |
htmlFilename-method | Class "BiocView" |
htmlFilename-method | Class "PackageDetail" |
htmlFilename-method | Class "RepositoryDetail" |
htmlFilename-method | Return a filename for an object's HTML representation |
Htmlized-class | Class "Htmlized" |
htmlValue | HTML Representation of an Object |
htmlValue-method | Class "BiocView" |
htmlValue-method | Class "PackageDetail" |
htmlValue-method | Class "RepositoryDetail" |
makeVocInfo | Parse VIEWS file for views and packages |
PackageDetail-class | Class "PackageDetail" |
pdAuthorMaintainerInfo-class | Class "PackageDetail" |
pdDescriptionInfo-class | Class "PackageDetail" |
pdDetailsInfo-class | Class "PackageDetail" |
pdDownloadInfo-class | Class "PackageDetail" |
pdVignetteInfo-class | Class "PackageDetail" |
pdVigsAndDownloads-class | Class "PackageDetail" |
permulist | Parse VIEWS file for views and packages |
printNEWS | Retrieve and print package NEWS |
pump | Parse VIEWS file for views and packages |
rdPackageTable-class | Class "RepositoryDetail" |
recommendBiocViews | Recommend biocViews for an existing Package. |
recommendPackages | Recommend Packages using existing biocViews. |
RepositoryDetail-class | Class "RepositoryDetail" |
show-method | Class "BiocView" |
tellSubTop | Parse VIEWS file for views and packages |
tellSuperTop | Parse VIEWS file for views and packages |
validate_bioc_views | Validate a package's biocViews. |
validation_tests | Validate a package's biocViews. |
writeBiocViews | Write a list of BiocView objects to HTML |
writeHtmlDoc | Write an XML DOM containing HTML to a file |
writePackageDetailHtml | Write HTML files for packages in a CRAN-style repository |
writeRepositoryHtml | Write package descriptions and a repository index as HTML |
writeRFilesFromVignettes | Write R files from vignettes |
writeTopLevelView | Write the view for the root of a vocabulary to disk |
write_REPOSITORY | Write a REPOSITORY control file for a CRAN-style package repository |
write_SYMBOLS | Write a SYMBOLS file |
write_VIEWS | Write a VIEWS control file for a CRAN-style package repository |