Class BaseErrorMetric

    • Field Detail

      • ERROR_BASES

        public long ERROR_BASES
        The number of bases that disagree with the reference
      • Q_SCORE

        public int Q_SCORE
        The (phred) rate of bases that disagree with the reference
    • Constructor Detail

      • BaseErrorMetric

        public BaseErrorMetric​(String covariate,
                               long totalBases,
                               long errorBases)
      • BaseErrorMetric

        public BaseErrorMetric()
    • Method Detail

      • calculateDerivedFields

        public void calculateDerivedFields()
        Description copied from class: MergeableMetricBase
        Placeholder method that will calculate the derived fields from the other ones. Classes that are derived from non-trivial derived classes should consider calling super.calculateDerivedFields() as well. Fields whose value will change due to this method should be annotated with NoMergingKeepsValue.
        Overrides:
        calculateDerivedFields in class MergeableMetricBase