Class SAMRecordMultiLevelCollector<BEAN extends htsjdk.samtools.metrics.MetricBase,​HKEY extends Comparable>

  • Direct Known Subclasses:
    RnaSeqMetricsCollector, TargetMetricsCollector

    public abstract class SAMRecordMultiLevelCollector<BEAN extends htsjdk.samtools.metrics.MetricBase,​HKEY extends Comparable>
    extends MultiLevelCollector<BEAN,​HKEY,​htsjdk.samtools.SAMRecord>
    Defines a MultilevelPerRecordCollector using the argument type of SAMRecord so that this doesn't have to be redefined for each subclass of MultilevelPerRecordCollector
    • Constructor Detail

      • SAMRecordMultiLevelCollector

        public SAMRecordMultiLevelCollector()
    • Method Detail

      • makeArg

        protected htsjdk.samtools.SAMRecord makeArg​(htsjdk.samtools.SAMRecord samRec,
                                                    htsjdk.samtools.reference.ReferenceSequence refSeq)
        Specified by:
        makeArg in class MultiLevelCollector<BEAN extends htsjdk.samtools.metrics.MetricBase,​HKEY extends Comparable,​htsjdk.samtools.SAMRecord>