Enum Transition

    • Field Detail

      • baseIndexMap

        protected static final int[] baseIndexMap
    • Method Detail

      • values

        public static Transition[] values()
        Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
        for (Transition c : Transition.values())
            System.out.println(c);
        
        Returns:
        an array containing the constants of this enum type, in the order they are declared
      • valueOf

        public static Transition valueOf​(String name)
        Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
        Parameters:
        name - the name of the enum constant to be returned.
        Returns:
        the enum constant with the specified name
        Throws:
        IllegalArgumentException - if this enum type has no constant with the specified name
        NullPointerException - if the argument is null
      • transitionOf

        public static Transition transitionOf​(char ref,
                                              char call)
        Gets a the enum representing the transition from a 'reference' to a 'call' base.

        For example, a transtion from 'A' to 'T' would return AtoT.

        Parameters:
        ref - reference base (one of of {A, C, T, G}).
        call - call base (one of of {A, C, T, G}).
        Returns:
        enum representation for the transition.
      • altValues

        public static Transition[] altValues()
        Like values(), but ignores the ref:ref "transitions".
      • complement

        public Transition complement()
        Return the complementary transition. Both ref and call must be complemented.
      • ref

        public char ref()
        Gets the reference for the transition.
      • call

        public char call()
        Gets the call for the transition.