Package picard.fingerprint
Class MatchResults
- java.lang.Object
-
- picard.fingerprint.MatchResults
-
- All Implemented Interfaces:
Comparable<MatchResults>
public class MatchResults extends Object implements Comparable<MatchResults>
Represents the results of a fingerprint comparison between one dataset and a specific fingerprint file. Implements Comparable so that better matches (higher positive LODs) are sorted earlier.
-
-
Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description int
compareTo(MatchResults that)
Provides a natural sort so that better matches (by LOD) sort earlier.Path
getFingerprintFile()
SortedSet<picard.fingerprint.LocusResult>
getLocusResults()
double
getLOD()
double
getLodNT()
double
getLodTN()
double
getPopulationLikelihood()
String
getSample()
double
getSampleLikelihood()
-
-
-
Method Detail
-
getLodNT
public double getLodNT()
-
getLodTN
public double getLodTN()
-
compareTo
public int compareTo(MatchResults that)
Provides a natural sort so that better matches (by LOD) sort earlier.- Specified by:
compareTo
in interfaceComparable<MatchResults>
-
getSample
public String getSample()
-
getSampleLikelihood
public double getSampleLikelihood()
-
getPopulationLikelihood
public double getPopulationLikelihood()
-
getLOD
public double getLOD()
-
getLocusResults
public SortedSet<picard.fingerprint.LocusResult> getLocusResults()
-
getFingerprintFile
public Path getFingerprintFile()
-
-