Class MolDistHistVizHiddenPPPoints

    • Field Detail

      • TAG_FLEXOPHORE_ALL

        public static final java.lang.String TAG_FLEXOPHORE_ALL
        See Also:
        Constant Field Values
      • TAG_MOLDISTHISTVIZ_HIDDENPPPOINTS

        public static final java.lang.String TAG_MOLDISTHISTVIZ_HIDDENPPPOINTS
        See Also:
        Constant Field Values
      • TAG_FLEXOPHORE_OBJECT

        public static final java.lang.String TAG_FLEXOPHORE_OBJECT
        The native object MolDistHistVizHiddenPPPoints. For the map in FFMolecule etc.
        See Also:
        Constant Field Values
      • TAG_FLEXOPHORE_OBJECTLIST

        public static final java.lang.String TAG_FLEXOPHORE_OBJECTLIST
        See Also:
        Constant Field Values
    • Constructor Detail

      • MolDistHistVizHiddenPPPoints

        public MolDistHistVizHiddenPPPoints​(MolDistHistViz mdhv)
      • MolDistHistVizHiddenPPPoints

        public MolDistHistVizHiddenPPPoints​(MolDistHist mdh)
    • Method Detail

      • addHiddenPharmacophorePoint

        public void addHiddenPharmacophorePoint​(byte indexPPNodeAbsolute)
      • removeHiddenPharmacophorePoint

        public void removeHiddenPharmacophorePoint​(byte indexPPNodeAbsolute)
      • resetHiddenPharmacophorePoints

        public void resetHiddenPharmacophorePoints()
      • getRelMaxDistInHistSkipHidden

        public double getRelMaxDistInHistSkipHidden​(int indexAt1,
                                                    int indexAt2)
      • getNodeSkipHidden

        public PPNodeViz getNodeSkipHidden​(int indexNode)
      • getDistHistSkipHidden

        public byte[] getDistHistSkipHidden​(int indexAt1,
                                            int indexAt2,
                                            byte[] arr)
      • getDistHistSkipHidden

        public byte[] getDistHistSkipHidden​(int indexAt1,
                                            int indexAt2)
      • isInevitablePharmacophorePointSkipHidden

        public boolean isInevitablePharmacophorePointSkipHidden​(int indexNode)
      • getNumInevitablePharmacophorePointsSkipHidden

        public int getNumInevitablePharmacophorePointsSkipHidden()
      • getSizeSkipHidden

        public int getSizeSkipHidden()
      • getHashSetHiddenIndex

        protected java.util.HashSet<java.lang.Byte> getHashSetHiddenIndex()
        Returns:
        the hsHiddenIndex
      • isHiddenPharmacophorePointAbsolute

        public boolean isHiddenPharmacophorePointAbsolute​(byte indexNodeAbsolute)
      • isInevitablePharmacophorePointAbsolute

        public boolean isInevitablePharmacophorePointAbsolute​(int indexNodeAbsolute)
      • getMolDistHistVizSkipHidden

        public MolDistHistViz getMolDistHistVizSkipHidden()
        Returns:
        deep copy.
      • toStringHiddenAndInevitable

        public java.lang.String toStringHiddenAndInevitable()