Class RXNFileParser


  • public class RXNFileParser
    extends java.lang.Object
    • Constructor Summary

      Constructors 
      Constructor Description
      RXNFileParser()  
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      Reaction getReaction​(java.io.File file)  
      Reaction getReaction​(java.io.File file, boolean ignoreIdCode)  
      Reaction getReaction​(java.lang.String buffer)  
      Reaction getReaction​(java.lang.String buffer, boolean ignoreIdCode)  
      boolean parse​(Reaction theReaction, java.io.BufferedReader theReader)  
      boolean parse​(Reaction theReaction, java.io.BufferedReader theReader, boolean ignoreIdCode)  
      boolean parse​(Reaction theReaction, java.io.File file)  
      boolean parse​(Reaction theReaction, java.io.File file, boolean ignoreIdCode)  
      boolean parse​(Reaction theReaction, java.lang.String buffer)  
      boolean parse​(Reaction theReaction, java.lang.String buffer, boolean ignoreIdCode)  
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • RXNFileParser

        public RXNFileParser()
    • Method Detail

      • getReaction

        public Reaction getReaction​(java.lang.String buffer)
                             throws java.lang.Exception
        Throws:
        java.lang.Exception
      • getReaction

        public Reaction getReaction​(java.lang.String buffer,
                                    boolean ignoreIdCode)
                             throws java.lang.Exception
        Throws:
        java.lang.Exception
      • getReaction

        public Reaction getReaction​(java.io.File file)
                             throws java.lang.Exception
        Throws:
        java.lang.Exception
      • getReaction

        public Reaction getReaction​(java.io.File file,
                                    boolean ignoreIdCode)
                             throws java.lang.Exception
        Throws:
        java.lang.Exception
      • parse

        public boolean parse​(Reaction theReaction,
                             java.lang.String buffer)
                      throws java.lang.Exception
        Throws:
        java.lang.Exception
      • parse

        public boolean parse​(Reaction theReaction,
                             java.lang.String buffer,
                             boolean ignoreIdCode)
                      throws java.lang.Exception
        Throws:
        java.lang.Exception
      • parse

        public boolean parse​(Reaction theReaction,
                             java.io.File file)
                      throws java.lang.Exception
        Throws:
        java.lang.Exception
      • parse

        public boolean parse​(Reaction theReaction,
                             java.io.File file,
                             boolean ignoreIdCode)
                      throws java.lang.Exception
        Throws:
        java.lang.Exception
      • parse

        public boolean parse​(Reaction theReaction,
                             java.io.BufferedReader theReader)
                      throws java.lang.Exception
        Throws:
        java.lang.Exception
      • parse

        public boolean parse​(Reaction theReaction,
                             java.io.BufferedReader theReader,
                             boolean ignoreIdCode)
                      throws java.lang.Exception
        Throws:
        java.lang.Exception