Serialized Form
-
Package com.actelion.research.calc
-
Class com.actelion.research.calc.LUDecomposition extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
-
Serialized Fields
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LU
double[][] LU
Array for internal storage of decomposition.internal array storage. -
m
int m
Row and column dimensions, and pivot sign.column dimension. -
n
int n
Row and column dimensions, and pivot sign.column dimension. -
piv
int[] piv
Internal storage of pivot vector.pivot vector. -
pivsign
int pivsign
Row and column dimensions, and pivot sign.column dimension.
-
-
Class com.actelion.research.calc.SingularValueDecomposition extends java.lang.Object implements Serializable
- serialVersionUID:
- 537985828L
-
Serialized Fields
-
m
int m
Row and column dimensions.row dimension. -
n
int n
Row and column dimensions.row dimension. -
s
double[] s
Array for internal storage of singular values.internal storage of singular values. -
U
double[][] U
Arrays for internal storage of U and V.internal storage of U. -
V
double[][] V
Arrays for internal storage of U and V.internal storage of U.
-
-
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Package com.actelion.research.calc.classification
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Class com.actelion.research.calc.classification.PrecisionAndRecall extends java.lang.Object implements Serializable
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Serialized Fields
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falseNegative
int falseNegative
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falsePositive
int falsePositive
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trueNegative
int trueNegative
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truePositive
int truePositive
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-
-
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Package com.actelion.research.calc.regression
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Class com.actelion.research.calc.regression.ParameterRegressionMethod extends java.lang.Object implements Serializable
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Serialized Fields
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properties
java.util.Properties properties
-
-
-
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Package com.actelion.research.calc.regression.gaussianprocess
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Class com.actelion.research.calc.regression.gaussianprocess.ParameterGaussianProcess extends ParameterRegressionMethod implements Serializable
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Serialized Fields
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lambda
double lambda
-
-
-
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Package com.actelion.research.calc.regression.knn
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Class com.actelion.research.calc.regression.knn.ParameterKNN extends ParameterRegressionMethod implements Serializable
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Serialized Fields
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neighbours
int neighbours
-
-
-
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Package com.actelion.research.calc.regression.linear.pls
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Class com.actelion.research.calc.regression.linear.pls.ParameterPLS extends ParameterRegressionMethod implements Serializable
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Serialized Fields
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centerData
boolean centerData
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factors
int factors
-
-
-
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Package com.actelion.research.calc.regression.linear.pls.boxcox
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Class com.actelion.research.calc.regression.linear.pls.boxcox.ParameterPLSBoxCox extends ParameterPLS implements Serializable
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Serialized Fields
-
lambda
double lambda
-
-
-
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Package com.actelion.research.calc.regression.median
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Class com.actelion.research.calc.regression.median.ParameterMedian extends ParameterRegressionMethod implements Serializable
-
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Package com.actelion.research.calc.regression.neuralnetwork
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Class com.actelion.research.calc.regression.neuralnetwork.ParameterNeuralNetwork extends ParameterRegressionMethod implements Serializable
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Serialized Fields
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activationFunction
NeuralNetwork.ActivationFunction activationFunction
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arrInnerLayerArchitecture
int[] arrInnerLayerArchitecture
-
-
-
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Package com.actelion.research.calc.regression.randomforest
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Class com.actelion.research.calc.regression.randomforest.ParameterRandomForest extends ParameterRegressionMethod implements Serializable
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Serialized Fields
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fractionMTry
double fractionMTry
Number of variables available for splitting at each tree node. In the random forests literature, this is referred to as the mtry parameter. default for regression models, it is the number of predictor variables divided by 3 (rounded down). There is extensive discussion in the literature about the influence of mtry. Cutler et al. (2007) reported that different values of mtry did not affect the correct classification rates of their model and that other performance metrics (sensitivity, specificity, kappa, and ROC AUC) were stable under different values of mtry. On the other hand, Strobl et al. (2008) reported that mtry had a strong influence on predictor variable importance estimates. Due to the conflicting evidence reported in the literature, we suggest you start with the default value (i.e. leave this parameter blank) but review the literature carefully and form your own opinion about what value might be suitable for your specific model. http://code.env.duke.edu/projects/mget/export/HEAD/MGET/Trunk/PythonPackage/dist/TracOnlineDocumentation/Documentation/ArcGISReference/RandomForestModel.FitToArcGISTable.html -
maxNodes
int maxNodes
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nodeSize
int nodeSize
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nTrees
int nTrees
-
-
-
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Package com.actelion.research.calc.regression.svm
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Class com.actelion.research.calc.regression.svm.ParameterSVM extends ParameterRegressionMethod implements Serializable
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Serialized Fields
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C
double C
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cache_size
double cache_size
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coef0
double coef0
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degree
int degree
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eps
double eps
-
gamma
double gamma
-
kernelType
int kernelType
-
nr_weight
int nr_weight
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nu
double nu
-
p
double p
-
probability
int probability
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shrinking
int shrinking
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svmType
int svmType
-
weight
double[] weight
-
weight_label
int[] weight_label
-
-
-
-
Package com.actelion.research.calc.statistics
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Class com.actelion.research.calc.statistics.ModelStatisticsOverview extends java.lang.Object implements Serializable
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Serialized Fields
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avr
double avr
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max
double max
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min
double min
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sdv
double sdv
-
-
-
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Package com.actelion.research.chem
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Class com.actelion.research.chem.Coordinates extends java.lang.Object implements Serializable
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Serialized Fields
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x
double x
-
y
double y
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z
double z
-
-
-
Class com.actelion.research.chem.DrawingObjectList extends java.util.ArrayList<AbstractDrawingObject> implements Serializable
- serialVersionUID:
- 537265956L
-
Class com.actelion.research.chem.ExtendedMolecule extends Molecule implements Serializable
- serialVersionUID:
- 537316094L
-
Serialization Methods
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readObject
private void readObject(java.io.ObjectInputStream stream) throws java.io.IOException
- Throws:
java.io.IOException
-
writeObject
private void writeObject(java.io.ObjectOutputStream stream) throws java.io.IOException
- Throws:
java.io.IOException
-
-
Class com.actelion.research.chem.MarkushStructure extends java.lang.Object implements Serializable
- serialVersionUID:
- 537396501L
-
Serialized Fields
-
mCoreIndex
int mCoreIndex
-
mCoreList
java.util.ArrayList<StereoMolecule> mCoreList
-
mCoreRGroup
int[][] mCoreRGroup
-
mRGroupList
java.util.ArrayList<StereoMolecule> mRGroupList
-
mSubstituent
StereoMolecule[][] mSubstituent
-
mSubstituentCount
int[] mSubstituentCount
-
mSubstituentIndex
int[] mSubstituentIndex
-
mSubstituentRGroup
int[][][] mSubstituentRGroup
-
-
Class com.actelion.research.chem.Molecule extends java.lang.Object implements Serializable
- serialVersionUID:
- 537920272L
-
Serialization Methods
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readObject
private void readObject(java.io.ObjectInputStream stream) throws java.io.IOException
- Throws:
java.io.IOException
-
writeObject
private void writeObject(java.io.ObjectOutputStream stream) throws java.io.IOException
- Throws:
java.io.IOException
-
-
Class com.actelion.research.chem.Molecule3D extends StereoMolecule implements Serializable
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Serialized Fields
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atomFlags
int[] atomFlags
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auxiliaryInfos
java.util.Map<java.lang.String,java.lang.Object> auxiliaryInfos
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infos
java.lang.Object[][] infos
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nMovables
int nMovables
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partialCharges
double[] partialCharges
-
-
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Class com.actelion.research.chem.SDFileMolecule extends StereoMolecule implements Serializable
- serialVersionUID:
- 537119486L
-
Serialization Methods
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readObject
private void readObject(java.io.ObjectInputStream stream) throws java.io.IOException
- Throws:
java.io.IOException
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writeObject
private void writeObject(java.io.ObjectOutputStream stream) throws java.io.IOException
- Throws:
java.io.IOException
-
-
Class com.actelion.research.chem.SortedStringList extends java.lang.Object implements Serializable
- serialVersionUID:
- 537265952L
-
Serialized Fields
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mList
java.util.ArrayList<java.lang.String> mList
-
-
Class com.actelion.research.chem.StereoMolecule extends ExtendedMolecule implements Serializable
- serialVersionUID:
- 537316094L
-
Serialization Methods
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readObject
private void readObject(java.io.ObjectInputStream stream) throws java.io.IOException
- Throws:
java.io.IOException
-
writeObject
private void writeObject(java.io.ObjectOutputStream stream) throws java.io.IOException
- Throws:
java.io.IOException
-
-
Class com.actelion.research.chem.StructureInfo extends java.lang.Object implements Serializable
- serialVersionUID:
- 537250558L
-
Serialized Fields
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data_
java.util.Map data_
-
-
Class com.actelion.research.chem.StructureSearchSpecification extends java.lang.Object implements Serializable
- serialVersionUID:
- 538051586L
-
Serialized Fields
-
mDescriptor
java.lang.Object[] mDescriptor
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mDescriptorShortName
java.lang.String mDescriptorShortName
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mIDCode
byte[][] mIDCode
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mSearchType
int mSearchType
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mSimilarityThreshold
float mSimilarityThreshold
-
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Class com.actelion.research.chem.StructureTransferData extends java.lang.Object implements Serializable
- serialVersionUID:
- 537250558L
-
Serialized Fields
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mol_
ExtendedMolecule mol_
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si_
StructureInfo si_
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Class com.actelion.research.chem.UniqueStringList extends SortedStringList implements Serializable
- serialVersionUID:
- 537265952L
-
Serialized Fields
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mIndexList
java.util.ArrayList<java.lang.Integer> mIndexList
-
mOriginalOrder
java.util.ArrayList<java.lang.String> mOriginalOrder
-
-
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Package com.actelion.research.chem.conf
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Class com.actelion.research.chem.conf.ConformerSet extends java.util.TreeSet<Conformer> implements Serializable
-
-
Package com.actelion.research.chem.coords
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Class com.actelion.research.chem.coords.InventorDefaultTemplateList extends java.util.ArrayList<InventorTemplate> implements Serializable
-
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Package com.actelion.research.chem.descriptor.flexophore
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Class com.actelion.research.chem.descriptor.flexophore.DistHist extends java.lang.Object implements Serializable
- serialVersionUID:
- 17042013L
-
Serialized Fields
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arrDistHists
byte[] arrDistHists
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identifier
int identifier
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numPPNodes
int numPPNodes
-
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Class com.actelion.research.chem.descriptor.flexophore.ExceptionConformationGenerationFailed extends java.lang.RuntimeException implements Serializable
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Class com.actelion.research.chem.descriptor.flexophore.MolDistHist extends DistHist implements Serializable
- serialVersionUID:
- 5042020L
-
Serialized Fields
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arrNode
byte[] arrNode
-
finalized
boolean finalized
-
modeFlexophore
byte modeFlexophore
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posNode
int posNode
-
-
Class com.actelion.research.chem.descriptor.flexophore.MolDistHistViz extends DistHist implements Serializable
- serialVersionUID:
- 15052013L
-
Serialized Fields
-
finalized
boolean finalized
-
flagsDescribe
int flagsDescribe
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hsIndexInevitablePPPoints
java.util.HashSet<java.lang.Integer> hsIndexInevitablePPPoints
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liDistanceTable
java.util.List<float[][]> liDistanceTable
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liPPNodeViz
java.util.List<PPNodeViz> liPPNodeViz
-
modeFlexophore
byte modeFlexophore
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molecule3D
Molecule3D molecule3D
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numCNodes
int numCNodes
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numHeteroNodes
int numHeteroNodes
-
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Class com.actelion.research.chem.descriptor.flexophore.MolDistHistVizFrag extends MolDistHistViz implements Serializable
- serialVersionUID:
- 24112010L
-
Serialized Fields
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arrIndexParentNodes
int[] arrIndexParentNodes
-
-
Class com.actelion.research.chem.descriptor.flexophore.PPNodeViz extends PPNode implements Serializable
- serialVersionUID:
- 22022013L
-
Serialized Fields
-
coordinates
Coordinates coordinates
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hsIndexOriginalAtoms
java.util.HashSet<java.lang.Integer> hsIndexOriginalAtoms
-
index
byte index
-
indexSphereViz
int indexSphereViz
-
mappingIndex
int mappingIndex
-
marked
boolean marked
-
similarityMappingNodes
float similarityMappingNodes
-
-
Class com.actelion.research.chem.descriptor.flexophore.UnparametrizedAtomTypeException extends java.lang.Exception implements Serializable
- serialVersionUID:
- 23072007L
-
-
Package com.actelion.research.chem.docking
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Class com.actelion.research.chem.docking.DockingFailedException extends java.lang.Exception implements Serializable
-
-
Package com.actelion.research.chem.forcefield.mmff
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Class com.actelion.research.chem.forcefield.mmff.BadAtomTypeException extends java.lang.RuntimeException implements Serializable
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Class com.actelion.research.chem.forcefield.mmff.BadRingAromException extends java.lang.RuntimeException implements Serializable
-
Class com.actelion.research.chem.forcefield.mmff.MMFFMolecule extends StereoMolecule implements Serializable
-
Serialized Fields
-
mAtomTypes
int[] mAtomTypes
-
mHydrogenMap
int[] mHydrogenMap
-
mRingArom
RingBoolean[] mRingArom
-
-
-
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Package com.actelion.research.chem.properties.complexity
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Class com.actelion.research.chem.properties.complexity.ContainerBitArray.CapacityReachedError extends java.lang.RuntimeException implements Serializable
-
-
Package com.actelion.research.chem.reaction
-
Class com.actelion.research.chem.reaction.DatabaseReaction extends Reaction implements Serializable
- serialVersionUID:
- 1L
-
Serialized Fields
-
mMoleculeRegNo
int[] mMoleculeRegNo
-
mReactionRegNo
int mReactionRegNo
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mYield
int mYield
-
-
Class com.actelion.research.chem.reaction.Reaction extends java.lang.Object implements Serializable
- serialVersionUID:
- 537316094L
-
Serialized Fields
-
mCatalyst
java.util.ArrayList<StereoMolecule> mCatalyst
-
mDrawingObjectList
DrawingObjectList mDrawingObjectList
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mIsFragment
boolean mIsFragment
-
mMaxMapNo
int mMaxMapNo
-
mName
java.lang.String mName
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mProduct
java.util.ArrayList<StereoMolecule> mProduct
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mReactant
java.util.ArrayList<StereoMolecule> mReactant
-
-
Class com.actelion.research.chem.reaction.ReactionSearchSpecification extends java.lang.Object implements Serializable
- serialVersionUID:
- 538970147L
-
Serialized Fields
-
mPeripherySimilarity
float mPeripherySimilarity
-
mProductDescriptor
long[][] mProductDescriptor
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mQuery
java.lang.String[] mQuery
-
mReactantDescriptor
long[][] mReactantDescriptor
-
mReactionCenterSimilarity
float mReactionCenterSimilarity
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mReactionDescriptor
long[][] mReactionDescriptor
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mRetronDescriptor
long[][] mRetronDescriptor
-
mSearchType
int mSearchType
-
-
-
Package com.actelion.research.gui
-
Class com.actelion.research.gui.CompoundCollectionPane extends javax.swing.JScrollPane implements Serializable
- serialVersionUID:
- 537266436L
-
Serialized Fields
-
mCellSize
java.awt.Dimension mCellSize
-
mClipboardHandler
IClipboardHandler mClipboardHandler
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mCompoundFilter
MoleculeFilter mCompoundFilter
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mContentPanel
javax.swing.JPanel mContentPanel
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mContentSize
java.awt.Dimension mContentSize
-
mCreateFragments
boolean mCreateFragments
-
mDisplayMode
int mDisplayMode
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mDragActions
int mDragActions
-
mDragIndex
int mDragIndex
-
mDropIndex
int mDropIndex
-
mEditedIndex
int mEditedIndex
-
mFileSupport
int mFileSupport
-
mHighlightedIndex
int mHighlightedIndex
-
mInternalDragAndDropIsMove
boolean mInternalDragAndDropIsMove
-
mIsEditable
boolean mIsEditable
-
mIsEnabled
boolean mIsEnabled
-
mIsSelectable
boolean mIsSelectable
-
mIsVertical
boolean mIsVertical
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mModel
CompoundCollectionModel<T> mModel
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mScroller
ScrollPaneAutoScrollerWhenDragging mScroller
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mSelectedIndex
int mSelectedIndex
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mShowValidationError
boolean mShowValidationError
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mStructureSize
int mStructureSize
-
-
Class com.actelion.research.gui.JAtomLabelDialog extends javax.swing.JDialog implements Serializable
- serialVersionUID:
- 537395731L
-
Serialized Fields
-
mAtom
int mAtom
Deprecated. -
mComboBoxRadical
javax.swing.JComboBox mComboBoxRadical
Deprecated. -
mMol
ExtendedMolecule mMol
Deprecated. -
mOwner
java.awt.Frame mOwner
Deprecated. -
mTextFieldLabel
javax.swing.JTextField mTextFieldLabel
Deprecated. -
mTextFieldMass
javax.swing.JTextField mTextFieldMass
Deprecated. -
mTextFieldValence
javax.swing.JTextField mTextFieldValence
Deprecated.
-
-
Class com.actelion.research.gui.JAtomQueryFeatureDialog extends javax.swing.JDialog implements Serializable
- serialVersionUID:
- 537265952L
-
Serialized Fields
-
mAtom
int mAtom
Deprecated. -
mCBAny
javax.swing.JCheckBox mCBAny
Deprecated. -
mCBBlocked
javax.swing.JCheckBox mCBBlocked
Deprecated. -
mCBExcludeGroup
javax.swing.JCheckBox mCBExcludeGroup
Deprecated. -
mCBMatchStereo
javax.swing.JCheckBox mCBMatchStereo
Deprecated. -
mCBSubstituted
javax.swing.JCheckBox mCBSubstituted
Deprecated. -
mChoiceArom
javax.swing.JComboBox mChoiceArom
Deprecated. -
mChoiceCharge
javax.swing.JComboBox mChoiceCharge
Deprecated. -
mChoiceHydrogen
javax.swing.JComboBox mChoiceHydrogen
Deprecated. -
mChoiceNeighbours
javax.swing.JComboBox mChoiceNeighbours
Deprecated. -
mChoicePi
javax.swing.JComboBox mChoicePi
Deprecated. -
mChoiceReactionParityHint
javax.swing.JComboBox mChoiceReactionParityHint
Deprecated. -
mChoiceRingSize
javax.swing.JComboBox mChoiceRingSize
Deprecated. -
mChoiceRingState
javax.swing.JComboBox mChoiceRingState
Deprecated. -
mLabelAtomList
javax.swing.JLabel mLabelAtomList
Deprecated. -
mMol
ExtendedMolecule mMol
Deprecated. -
mParent
java.awt.Component mParent
Deprecated. -
mTFAtomList
javax.swing.JTextField mTFAtomList
Deprecated.
-
-
Class com.actelion.research.gui.JBondQueryFeatureDialog extends javax.swing.JDialog implements Serializable
- serialVersionUID:
- 537331746L
-
Serialized Fields
-
mBond
int mBond
Deprecated. -
mCBDelocalized
javax.swing.JCheckBox mCBDelocalized
Deprecated. -
mCBDouble
javax.swing.JCheckBox mCBDouble
Deprecated. -
mCBIsBridge
javax.swing.JCheckBox mCBIsBridge
Deprecated. -
mCBMatchStereo
javax.swing.JCheckBox mCBMatchStereo
Deprecated. -
mCBMetalLigand
javax.swing.JCheckBox mCBMetalLigand
Deprecated. -
mCBSingle
javax.swing.JCheckBox mCBSingle
Deprecated. -
mCBTriple
javax.swing.JCheckBox mCBTriple
Deprecated. -
mComboBoxMaxAtoms
javax.swing.JComboBox mComboBoxMaxAtoms
Deprecated. -
mComboBoxMinAtoms
javax.swing.JComboBox mComboBoxMinAtoms
Deprecated. -
mComboBoxRing
javax.swing.JComboBox mComboBoxRing
Deprecated. -
mComboBoxRingSize
javax.swing.JComboBox mComboBoxRingSize
Deprecated. -
mFirstSpanItem
int mFirstSpanItem
Deprecated. -
mMol
ExtendedMolecule mMol
Deprecated.
-
-
Class com.actelion.research.gui.JChemistryView extends javax.swing.JComponent implements Serializable
- serialVersionUID:
- 20150204L
-
Serialized Fields
-
mAllowDropOrPasteWhenDisabled
boolean mAllowDropOrPasteWhenDisabled
-
mChemistryType
int mChemistryType
-
mCopyOrDragActions
int mCopyOrDragActions
-
mDepictor
ExtendedDepictor mDepictor
-
mDisplayMode
int mDisplayMode
-
mDragType
int mDragType
-
mFragmentNoColor
java.awt.Color mFragmentNoColor
-
mIsDragging
boolean mIsDragging
-
mIsEditable
boolean mIsEditable
-
mListener
java.util.ArrayList<StructureListener> mListener
-
mMoleculeDropAdapter
MoleculeDropAdapter mMoleculeDropAdapter
-
mOpaqueBackground
boolean mOpaqueBackground
-
mPasteAndDropOptions
int mPasteAndDropOptions
-
mPasteOrDropActions
int mPasteOrDropActions
-
mReactionDropAdapter
ReactionDropAdapter mReactionDropAdapter
-
mShowBorder
boolean mShowBorder
-
mSize
java.awt.Dimension mSize
-
mUpdateMode
int mUpdateMode
-
mWarningMessage
java.lang.String mWarningMessage
-
-
Class com.actelion.research.gui.JComboBoxWithColor extends javax.swing.JComboBox implements Serializable
- serialVersionUID:
- 537330454L
-
Class com.actelion.research.gui.JDrawArea extends javax.swing.JPanel implements Serializable
- serialVersionUID:
- 537268249L
-
Serialized Fields
-
mAllowQueryFeatures
boolean mAllowQueryFeatures
Deprecated. -
mAltIsDown
boolean mAltIsDown
Deprecated. -
mAtom1
int mAtom1
Deprecated. -
mAtom2
int mAtom2
Deprecated. -
mAtomColorSupported
boolean mAtomColorSupported
Deprecated. -
mAtomKeyStrokeBuffer
java.lang.StringBuilder mAtomKeyStrokeBuffer
Deprecated. -
mAtomText
java.lang.String[] mAtomText
Deprecated. -
mChainAtom
int[] mChainAtom
Deprecated. -
mChainAtoms
int mChainAtoms
Deprecated. -
mChainAtomX
double[] mChainAtomX
Deprecated. -
mChainAtomY
double[] mChainAtomY
Deprecated. -
mClipboardHandler
IClipboardHandler mClipboardHandler
Deprecated. -
mControlIsDown
boolean mControlIsDown
Deprecated. -
mCurrentCursor
int mCurrentCursor
Deprecated. -
mCurrentHiliteAtom
int mCurrentHiliteAtom
Deprecated. -
mCurrentHiliteBond
int mCurrentHiliteBond
Deprecated. -
mCurrentHiliteObject
AbstractDrawingObject mCurrentHiliteObject
Deprecated. -
mCurrentTool
int mCurrentTool
Deprecated. -
mDepictor
ExtendedDepictor mDepictor
Deprecated. -
mDisplayMode
int mDisplayMode
Deprecated. -
mDrawingObjectList
DrawingObjectList mDrawingObjectList
Deprecated. -
mFragment
StereoMolecule[] mFragment
Deprecated. -
mFragmentNo
int[] mFragmentNo
Deprecated. -
mHelpDialog
javax.swing.JDialog mHelpDialog
Deprecated. -
mHiliteBondSet
int[] mHiliteBondSet
Deprecated. -
mIsAddingToSelection
boolean mIsAddingToSelection
Deprecated. -
mIsSelectedAtom
boolean[] mIsSelectedAtom
Deprecated. -
mIsSelectedObject
boolean[] mIsSelectedObject
Deprecated. -
mLassoRegion
GenericPolygon mLassoRegion
Deprecated. -
mListeners
java.util.ArrayList<DrawAreaListener> mListeners
Deprecated. -
mMode
int mMode
Deprecated. -
mMol
StereoMolecule mMol
Deprecated. -
mMouseIsDown
boolean mMouseIsDown
Deprecated. -
mOtherAtom
int mOtherAtom
Deprecated. -
mOtherLabel
java.lang.String mOtherLabel
Deprecated. -
mOtherMass
int mOtherMass
Deprecated. -
mOtherRadical
int mOtherRadical
Deprecated. -
mOtherValence
int mOtherValence
Deprecated. -
mPendingRequest
int mPendingRequest
Deprecated. -
mReactantCount
int mReactantCount
Deprecated. -
mShiftIsDown
boolean mShiftIsDown
Deprecated. -
mSize
java.awt.Dimension mSize
Deprecated. -
mUndoDrawingObjectList
DrawingObjectList mUndoDrawingObjectList
Deprecated. -
mUndoMol
Molecule mUndoMol
Deprecated. -
mUpdateMode
int mUpdateMode
Deprecated. -
mWarningMessage
java.lang.String mWarningMessage
Deprecated. -
mX
double[] mX
Deprecated. -
mX1
double mX1
Deprecated. -
mX2
double mX2
Deprecated. -
mY
double[] mY
Deprecated. -
mY1
double mY1
Deprecated. -
mY2
double mY2
Deprecated.
-
-
Class com.actelion.research.gui.JDrawDialog extends javax.swing.JDialog implements Serializable
- serialVersionUID:
- 537268249L
-
Serialized Fields
-
mArea
JDrawArea mArea
Deprecated. -
mButtonPanel
javax.swing.JPanel mButtonPanel
Deprecated. -
mIsCancelled
boolean mIsCancelled
Deprecated. -
mListener
java.util.ArrayList<StructureListener> mListener
Deprecated. -
mMolecule
StereoMolecule mMolecule
Deprecated. -
mToolBar
JDrawToolbar mToolBar
Deprecated.
-
-
Class com.actelion.research.gui.JDrawPanel extends javax.swing.JPanel implements Serializable
- serialVersionUID:
- 537268249L
-
Serialized Fields
-
mArea
JDrawArea mArea
Deprecated. -
mToolBar
JDrawToolbar mToolBar
Deprecated.
-
-
Class com.actelion.research.gui.JDrawToolbar extends javax.swing.JComponent implements Serializable
- serialVersionUID:
- 537461762L
-
Serialized Fields
-
mArea
JDrawArea mArea
Deprecated. -
mCurrentTool
int mCurrentTool
Deprecated. -
mESRHilited
int mESRHilited
Deprecated. -
mESRImageDown
java.awt.Image mESRImageDown
Deprecated. -
mESRImageUp
java.awt.Image mESRImageUp
Deprecated. -
mESRMenuVisible
boolean mESRMenuVisible
Deprecated. -
mESRSelected
int mESRSelected
Deprecated. -
mImageDown
java.awt.Image mImageDown
Deprecated. -
mImageUp
java.awt.Image mImageUp
Deprecated. -
mMode
int mMode
Deprecated. -
mPressedButton
int mPressedButton
Deprecated.
-
-
Class com.actelion.research.gui.JEditableChemistryView extends JChemistryView implements Serializable
-
Serialized Fields
-
mMolecules
StereoMolecule[] mMolecules
-
mReaction
Reaction mReaction
-
-
-
Class com.actelion.research.gui.JEditableStructureView extends JStructureView implements Serializable
- serialVersionUID:
- 537462567L
-
Serialized Fields
-
mAllowQueryFeatures
boolean mAllowQueryFeatures
-
-
Class com.actelion.research.gui.JFileChooserOverwrite extends javax.swing.JFileChooser implements Serializable
- serialVersionUID:
- 20150101L
-
Serialized Fields
-
mExtension
java.lang.String mExtension
-
mFile
java.io.File mFile
-
-
Class com.actelion.research.gui.JImagePanel extends javax.swing.JPanel implements Serializable
- serialVersionUID:
- 538051842L
-
Serialized Fields
-
mAltIsDown
boolean mAltIsDown
-
mCurrentCursor
int mCurrentCursor
-
mFileName
java.lang.String mFileName
-
mImage
java.awt.Image mImage
-
mImageCenterOffsetX
int mImageCenterOffsetX
-
mImageCenterOffsetY
int mImageCenterOffsetY
-
mImageData
byte[] mImageData
-
mImageDataSource
ImageDataSource mImageDataSource
-
mImageIsThumbNail
boolean mImageIsThumbNail
-
mImagePath
java.lang.String mImagePath
-
mImageRect
java.awt.Rectangle mImageRect
-
mImageStatus
int mImageStatus
-
mImageUpdateCount
int mImageUpdateCount
-
mLowResImage
java.awt.Image mLowResImage
-
mMouseIsDown
boolean mMouseIsDown
-
mMouseIsInside
boolean mMouseIsInside
-
mMouseLocation
java.awt.Point mMouseLocation
-
mPopupItemProvider
PopupItemProvider mPopupItemProvider
-
mSelectionRect
java.awt.Rectangle mSelectionRect
-
mUseThumbNail
boolean mUseThumbNail
-
mZoomFactor
float mZoomFactor
-
-
Class com.actelion.research.gui.JImagePanelFixedSize extends javax.swing.JPanel implements Serializable
-
Serialized Fields
-
mImage
java.awt.Image mImage
-
-
-
Class com.actelion.research.gui.JLoginDialog extends javax.swing.JDialog implements Serializable
- serialVersionUID:
- 537920792L
-
Serialized Fields
-
mTextFieldPassword
javax.swing.JPasswordField mTextFieldPassword
-
mTextFieldUserID
javax.swing.JTextField mTextFieldUserID
-
-
Class com.actelion.research.gui.JMessageBar extends javax.swing.JPanel implements Serializable
-
Serialized Fields
-
mLabel
javax.swing.JLabel mLabel
-
mText
java.lang.String mText
-
-
-
Class com.actelion.research.gui.JMultiPanelTitle extends javax.swing.JComponent implements Serializable
- serialVersionUID:
- 537921555L
-
Serialized Fields
-
mDragEnabled
boolean mDragEnabled
-
mDragListener
MultiPanelDragListener mDragListener
-
mTitle
java.lang.String mTitle
-
-
Class com.actelion.research.gui.JMultiPanelView extends javax.swing.JPanel implements Serializable
- serialVersionUID:
- 537330452L
-
Serialized Fields
-
mDragStart
int mDragStart
-
mDragStartPanelHeight
int[] mDragStartPanelHeight
-
mDragTitle
int mDragTitle
-
mLayout
org.debian.tablelayout.TableLayout mLayout
-
mPanelList
java.util.ArrayList<com.actelion.research.gui.MultiPanelObject> mPanelList
-
-
Class com.actelion.research.gui.JPopupButton extends HiDPIIconButton implements Serializable
-
Serialized Fields
-
mListener
java.awt.event.ActionListener mListener
-
mPopup
javax.swing.JPopupMenu mPopup
-
-
-
Class com.actelion.research.gui.JProgressDialog extends javax.swing.JDialog implements Serializable
- serialVersionUID:
- 537330433L
-
Serialized Fields
-
mAction
int mAction
-
mBusyText
java.lang.String mBusyText
-
mLabelRemainingTime
javax.swing.JLabel mLabelRemainingTime
-
mLastUpdate
long mLastUpdate
-
mNewFrontFrame
java.awt.Frame mNewFrontFrame
-
mProcessCancelled
boolean mProcessCancelled
-
mProgressBar
javax.swing.JProgressBar mProgressBar
-
mProgressFactor
float mProgressFactor
-
mProgressLabel
javax.swing.JLabel mProgressLabel
-
mProgressMax
int mProgressMax
-
mProgressMessage
java.lang.String mProgressMessage
-
mProgressMin
int mProgressMin
-
mProgressStart
long mProgressStart
-
mProgressValue
int mProgressValue
-
-
Class com.actelion.research.gui.JProgressPanel extends javax.swing.JPanel implements Serializable
- serialVersionUID:
- 538182660L
-
Serialized Fields
-
mCancelAction
boolean mCancelAction
-
mCancelButton
javax.swing.JButton mCancelButton
-
mProgressBar
javax.swing.JProgressBar mProgressBar
-
mProgressLabel
javax.swing.JLabel mProgressLabel
-
mUpdateActionPending
boolean mUpdateActionPending
-
mUpdateFactor
float mUpdateFactor
-
mUpdateStatus
int mUpdateStatus
-
-
Class com.actelion.research.gui.JPruningBar extends javax.swing.JPanel implements Serializable
- serialVersionUID:
- 537330439L
-
Serialized Fields
-
mAllowDoubleClickChange
boolean mAllowDoubleClickChange
-
mClickedArea
int mClickedArea
-
mHighValue
float mHighValue
-
mID
int mID
-
mIsHorizontal
boolean mIsHorizontal
-
mListener
java.util.ArrayList<PruningBarListener> mListener
-
mLowValue
float mLowValue
-
mMaxValue
float mMaxValue
-
mMinValue
float mMinValue
-
mMousePosition
int mMousePosition
-
mPosition1
int mPosition1
-
mPosition2
int mPosition2
-
mSegmentSize
float mSegmentSize
-
mUpdateNeeded
boolean mUpdateNeeded
-
mUseRedColor
boolean mUseRedColor
-
-
Class com.actelion.research.gui.JScrollableMenu extends javax.swing.JMenu implements Serializable
-
Serialized Fields
-
popupMenu
javax.swing.JPopupMenu popupMenu
The popup menu portion of the menu.
-
-
-
Class com.actelion.research.gui.JScrollablePopupMenu extends javax.swing.JPopupMenu implements Serializable
-
Serialized Fields
-
maximumVisibleRows
int maximumVisibleRows
-
popupScrollBar
javax.swing.JScrollBar popupScrollBar
-
-
-
Class com.actelion.research.gui.JStructureView extends javax.swing.JComponent implements Serializable
- serialVersionUID:
- 537268499L
-
Serialized Fields
-
mAllowedDragAction
int mAllowedDragAction
-
mAllowedDropAction
int mAllowedDropAction
-
mAllowFragmentStatusChangeOnPasteOrDrop
boolean mAllowFragmentStatusChangeOnPasteOrDrop
-
mAtomHiliteColor
int[] mAtomHiliteColor
-
mAtomText
java.lang.String[] mAtomText
-
mChiralTextPosition
int mChiralTextPosition
-
mClipboardHandler
IClipboardHandler mClipboardHandler
-
mDepictor
GenericDepictor mDepictor
-
mDisableBorder
boolean mDisableBorder
-
mDisplayMode
int mDisplayMode
-
mDisplayMol
StereoMolecule mDisplayMol
-
mDropAdapter
MoleculeDropAdapter mDropAdapter
-
mIDCode
java.lang.String mIDCode
-
mIsDraggingThis
boolean mIsDraggingThis
-
mIsEditable
boolean mIsEditable
-
mListener
java.util.ArrayList<StructureListener> mListener
-
mMol
StereoMolecule mMol
-
mOpaqueBackground
boolean mOpaqueBackground
-
mShowBorder
boolean mShowBorder
-
mWarningMessage
java.lang.String mWarningMessage
-
-
Class com.actelion.research.gui.JTextDrawingObjectDialog extends javax.swing.JDialog implements Serializable
- serialVersionUID:
- 537985829L
-
Serialized Fields
-
mComboBoxStyle
javax.swing.JComboBox mComboBoxStyle
Deprecated. -
mComboBoxTextSize
javax.swing.JComboBox mComboBoxTextSize
Deprecated. -
mTextArea
javax.swing.JTextArea mTextArea
Deprecated. -
mTextObject
TextDrawingObject mTextObject
Deprecated.
-
-
Class com.actelion.research.gui.PruningBarEvent extends java.util.EventObject implements Serializable
- serialVersionUID:
- 537924119L
-
Serialized Fields
-
mAdjusting
boolean mAdjusting
-
mHighValue
float mHighValue
-
mID
int mID
-
mLowValue
float mLowValue
-
mType
int mType
-
-
Class com.actelion.research.gui.VerticalFlowLayout extends java.lang.Object implements Serializable
- serialVersionUID:
- 537986067L
-
Serialized Fields
-
_halign
int _halign
-
_hfill
boolean _hfill
-
_hgap
int _hgap
-
_valign
int _valign
-
_vgap
int _vgap
-
-
-
Package com.actelion.research.gui.dock
-
Class com.actelion.research.gui.dock.Dockable extends javax.swing.JPanel implements Serializable
- serialVersionUID:
- 537331488L
-
Serialized Fields
-
mContent
javax.swing.JComponent mContent
-
mDockingPanel
JDockingPanel mDockingPanel
-
mHeader
DockableHeader mHeader
-
mIsSelected
boolean mIsSelected
-
mIsVisible
boolean mIsVisible
-
-
Class com.actelion.research.gui.dock.DockableHeader extends javax.swing.JPanel implements Serializable
- serialVersionUID:
- 537331491L
-
Serialized Fields
-
mDockable
Dockable mDockable
-
mIsSelected
boolean mIsSelected
-
mMouseAdapter
HeaderMouseAdapter mMouseAdapter
-
mTitleLabel
javax.swing.JLabel mTitleLabel
-
mToolBar
javax.swing.JToolBar mToolBar
-
-
Class com.actelion.research.gui.dock.JDockingPanel extends javax.swing.JPanel implements Serializable
- serialVersionUID:
- 537331488L
-
Serialized Fields
-
mDividerChangeListeners
java.util.Vector<DividerChangeListener> mDividerChangeListeners
-
mDockableMap
java.util.TreeMap<java.lang.String,Dockable> mDockableMap
-
mLeafMap
java.util.TreeMap<java.lang.String,TreeLeaf> mLeafMap
-
mMaximizedView
Dockable mMaximizedView
-
mPreview
GhostPreview mPreview
-
mPreviousTargetDockable
Dockable mPreviousTargetDockable
-
mPreviousTargetPosition
int mPreviousTargetPosition
-
mTargetLeaf
TreeLeaf mTargetLeaf
-
mTargetPosition
int mTargetPosition
-
mTreeRoot
TreeRoot mTreeRoot
-
-
Class com.actelion.research.gui.dock.ShadowBorder extends javax.swing.border.AbstractBorder implements Serializable
- serialVersionUID:
- 537331719L
-
Serialized Fields
-
mColor
java.awt.Color mColor
-
mInsets
java.awt.Insets mInsets
-
-
-
Package com.actelion.research.gui.editor
-
Class com.actelion.research.gui.editor.DrawAreaEvent extends java.util.EventObject implements Serializable
- serialVersionUID:
- 537462289L
-
Serialized Fields
-
mIsUserChange
boolean mIsUserChange
-
mType
int mType
-
-
Class com.actelion.research.gui.editor.SwingEditorArea extends javax.swing.JPanel implements Serializable
-
Serialized Fields
-
mDrawArea
GenericDrawArea mDrawArea
-
mKeyHandler
SwingKeyHandler mKeyHandler
-
-
-
Class com.actelion.research.gui.editor.SwingEditorDialog extends javax.swing.JDialog implements Serializable
- serialVersionUID:
- 539037955L
-
Serialized Fields
-
mArea
SwingEditorArea mArea
-
mButtonPanel
javax.swing.JPanel mButtonPanel
-
mIsCancelled
boolean mIsCancelled
-
mListener
java.util.ArrayList<StructureListener> mListener
-
mMolecule
StereoMolecule mMolecule
-
mToolBar
SwingEditorToolbar mToolBar
-
-
Class com.actelion.research.gui.editor.SwingEditorPanel extends javax.swing.JPanel implements Serializable
- serialVersionUID:
- 539037955L
-
Serialized Fields
-
mArea
SwingEditorArea mArea
-
mToolBar
SwingEditorToolbar mToolBar
-
-
Class com.actelion.research.gui.editor.SwingEditorToolbar extends javax.swing.JPanel implements Serializable
-
Serialized Fields
-
mGenericToolbar
GenericEditorToolbar mGenericToolbar
-
-
-
-
Package com.actelion.research.gui.hidpi
-
Class com.actelion.research.gui.hidpi.HiDPIIcon extends javax.swing.ImageIcon implements Serializable
-
Class com.actelion.research.gui.hidpi.HiDPIIconButton extends javax.swing.JButton implements Serializable
-
Serialized Fields
-
mAnimationIcon
javax.swing.Icon[] mAnimationIcon
-
mAnimator
com.actelion.research.gui.hidpi.HiDPIIconButton.Animator mAnimator
-
mImageName
java.lang.String mImageName
-
mRotation
int mRotation
-
mStyle
java.lang.String mStyle
-
-
-
Class com.actelion.research.gui.hidpi.HiDPIToggleButton extends javax.swing.JToggleButton implements Serializable
-
Serialized Fields
-
mImageName1
java.lang.String mImageName1
-
mImageName2
java.lang.String mImageName2
-
-
-
Class com.actelion.research.gui.hidpi.JBrowseButtons extends javax.swing.JPanel implements Serializable
-
Serialized Fields
-
mActionListener
java.awt.event.ActionListener mActionListener
-
mShiftPressed
boolean mShiftPressed
-
-
-
Class com.actelion.research.gui.hidpi.ScaledEditorKit extends javax.swing.text.html.HTMLEditorKit implements Serializable
-
Class com.actelion.research.gui.hidpi.ScaledStyleSheet extends javax.swing.text.html.StyleSheet implements Serializable
- serialVersionUID:
- 1L
-
-
Package com.actelion.research.gui.swing
-
Class com.actelion.research.gui.swing.SwingDialog extends javax.swing.JDialog implements Serializable
-
Serialized Fields
-
mConsumer
DialogEventConsumer mConsumer
-
mContent
javax.swing.JPanel mContent
-
mParent
java.awt.Component mParent
-
-
-
-
Package com.actelion.research.gui.table
-
Class com.actelion.research.gui.table.ChemistryRenderPanel extends javax.swing.JPanel implements Serializable
- serialVersionUID:
- 537330450L
-
Serialized Fields
-
mAlternateBackground
boolean mAlternateBackground
-
mChemistry
java.lang.Object mChemistry
-
mOverruleForeground
java.awt.Color mOverruleForeground
-
-
Class com.actelion.research.gui.table.JTableWithRowNumbers extends javax.swing.JTable implements Serializable
- serialVersionUID:
- 537266438L
-
Serialized Fields
-
mDefaultCursor
java.awt.Cursor mDefaultCursor
-
mHeaderLineCount
int mHeaderLineCount
-
mIsResizing
boolean mIsResizing
-
mResizeCursor
java.awt.Cursor mResizeCursor
-
mResizingRowHeight
int mResizingRowHeight
-
mResizingRowY
int mResizingRowY
-
mRowHeaderMinWidth
int mRowHeaderMinWidth
-
mRowNumberTable
com.actelion.research.gui.table.JTableWithRowNumbers.RowNumberTable mRowNumberTable
-
mScrollPane
javax.swing.JScrollPane mScrollPane
-
-
-
Package com.actelion.research.util
-
Class com.actelion.research.util.ByteArrayArrayComparator extends java.lang.Object implements Serializable
- serialVersionUID:
- 538120213L
-
Class com.actelion.research.util.ByteArrayComparator extends java.lang.Object implements Serializable
- serialVersionUID:
- 538052617L
-
Class com.actelion.research.util.ErrorHashMap extends java.lang.Object implements Serializable
- serialVersionUID:
- 20122011L
-
Serialized Fields
-
hmMessage_ExceptionFreq
java.util.HashMap<java.lang.String,com.actelion.research.util.ExceptFreq> hmMessage_ExceptionFreq
-
-
Class com.actelion.research.util.IntArrayComparator extends java.lang.Object implements Serializable
- serialVersionUID:
- 538185762L
-
Class com.actelion.research.util.UniqueList extends SortedList<T extends java.lang.Comparable<? super T>> implements Serializable
- serialVersionUID:
- 538054678L
-
-
Package com.actelion.research.util.concurrent
-
Class com.actelion.research.util.concurrent.AtomicFloat extends java.lang.Number implements Serializable
-
Serialized Fields
-
bits
java.util.concurrent.atomic.AtomicInteger bits
-
-
-
-
Package com.actelion.research.util.datamodel
-
Class com.actelion.research.util.datamodel.ByteVec extends java.lang.Object implements Serializable
- serialVersionUID:
- 27052009L
-
Serialized Fields
-
data
byte[] data
-
hash
int hash
-
-
Class com.actelion.research.util.datamodel.IntArray extends java.lang.Object implements Serializable
-
Serialized Fields
-
data
int[] data
-
delta_capacity
int delta_capacity
-
hash
int hash
-
size
int size
-
-
-
Class com.actelion.research.util.datamodel.ScorePoint extends java.awt.Point implements Serializable
- serialVersionUID:
- 24052013L
-
Serialized Fields
-
score
double score
-
-
-
Package org.machinelearning.svm.libsvm
-
Class org.machinelearning.svm.libsvm.svm_model extends java.lang.Object implements Serializable
-
Serialized Fields
-
l
int l
-
label
int[] label
-
nr_class
int nr_class
-
nSV
int[] nSV
-
param
svm_parameter param
-
probA
double[] probA
-
probB
double[] probB
-
rho
double[] rho
-
SV
svm_node[][] SV
-
sv_coef
double[][] sv_coef
-
sv_indices
int[] sv_indices
-
-
-
Class org.machinelearning.svm.libsvm.svm_node extends java.lang.Object implements Serializable
-
Serialized Fields
-
index
int index
-
value
double value
-
-
-
Class org.machinelearning.svm.libsvm.svm_parameter extends java.lang.Object implements Serializable
-
Serialized Fields
-
C
double C
-
cache_size
double cache_size
-
coef0
double coef0
-
degree
int degree
-
eps
double eps
-
gamma
double gamma
-
kernel_type
int kernel_type
-
nr_weight
int nr_weight
-
nu
double nu
-
p
double p
-
probability
int probability
-
shrinking
int shrinking
-
svm_type
int svm_type
-
weight
double[] weight
-
weight_label
int[] weight_label
-
-
-
Class org.machinelearning.svm.libsvm.svm_problem extends java.lang.Object implements Serializable
-
Serialized Fields
-
l
int l
-
x
svm_node[][] x
-
y
double[] y
-
-
-
-
Package org.openmolecules.chem.conf.gen
-
Class org.openmolecules.chem.conf.gen.RigidFragmentCache extends java.util.concurrent.ConcurrentHashMap<java.lang.String,RigidFragmentCache.CacheEntry> implements Serializable
-
Serialized Fields
-
mDefaultCacheLoaded
boolean mDefaultCacheLoaded
-
mGetCount
int mGetCount
-
mHitCount
int mHitCount
-
mNonCachableCount
int mNonCachableCount
-
mSetOfLoadedCacheFiles
java.util.TreeSet<java.lang.String> mSetOfLoadedCacheFiles
-
-
-
-
Package smile.clustering
-
Class smile.clustering.CLARANS extends PartitionClustering<T> implements Serializable
- serialVersionUID:
- 1L
-
Serialized Fields
-
distance
Distance<T> distance
The distance measure for calculation of distortion. -
distortion
double distortion
The total distortion. -
maxNeighbor
int maxNeighbor
The maximum number of neighbors examined during a search of local minima. -
medoids
T[] medoids
The medoids of each cluster. -
numLocal
int numLocal
The number of local minima to search for.
-
-
Class smile.clustering.KMeans extends PartitionClustering<double[]> implements Serializable
- serialVersionUID:
- 1L
-
Serialized Fields
-
centroids
double[][] centroids
The centroids of each cluster. -
distortion
double distortion
The total distortion.
-
-
Class smile.clustering.PartitionClustering extends java.lang.Object implements Serializable
-
Serialized Fields
-
k
int k
The number of clusters. -
size
int[] size
The number of samples in each cluster. -
y
int[] y
The cluster labels of data.
-
-
-
-
Package smile.data
-
Class smile.data.Attribute extends java.lang.Object implements Serializable
-
Serialized Fields
-
description
java.lang.String description
The detailed description of the attribute. -
name
java.lang.String name
The name of attribute. -
type
Attribute.Type type
The type of attribute. -
weight
double weight
Optional weight of this attribute. By default, it is 1.0. The particular meaning of weight depends on applications and machine learning algorithms. Although there are on explicit requirements on the weights, in general, they should be positive.
-
-
-
Class smile.data.DateAttribute extends Attribute implements Serializable
-
Serialized Fields
-
format
java.text.DateFormat format
Date string format.
-
-
-
Class smile.data.NominalAttribute extends Attribute implements Serializable
-
Serialized Fields
-
map
java.util.HashMap<java.lang.String,java.lang.Integer> map
Map a string to an integer level. -
open
boolean open
True if the string values of the nominal attribute is a open set. The new string values will be added into the attribute when calling the method valueOf(String). -
values
java.util.List<java.lang.String> values
The string values of the nominal attribute.
-
-
-
Class smile.data.NumericAttribute extends Attribute implements Serializable
-
-
Package smile.math
-
Class smile.math.Complex extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
-
Serialized Fields
-
im
double im
The imaginary part. -
re
double re
The real part.
-
-
Class smile.math.SparseArray extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
-
Serialized Fields
-
array
java.util.List<SparseArray.Entry> array
-
-
Class smile.math.SparseArray.Entry extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
-
Serialized Fields
-
i
int i
The index of entry. -
x
double x
The value of entry.
-
-
-
Package smile.math.distance
-
Package smile.math.kernel
-
Class smile.math.kernel.GaussianKernel extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
-
Serialized Fields
-
gamma
double gamma
The width of the kernel.
-
-
-
Package smile.math.matrix
-
Class smile.math.matrix.JMatrix extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
-
Serialized Fields
-
A
double[] A
The matrix storage. -
ncols
int ncols
The number of columns. -
nrows
int nrows
The number of rows. -
symmetric
boolean symmetric
True if the matrix is symmetric.
-
-
-
Package smile.math.rbf
-
Class smile.math.rbf.GaussianRadialBasis extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
-
Serialized Fields
-
r0
double r0
The scale factor.
-
-
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Package smile.regression
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Class smile.regression.GaussianProcessRegression extends java.lang.Object implements Serializable
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- 1L
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Serialized Fields
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kernel
MercerKernel<T> kernel
The distance functor. -
knots
T[] knots
The control points in the regression. -
lambda
double lambda
The shrinkage/regularization parameter. -
w
double[] w
The linear weights.
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Class smile.regression.NeuralNetwork extends java.lang.Object implements Serializable
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- 1L
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Serialized Fields
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activationFunction
NeuralNetwork.ActivationFunction activationFunction
The type of activation function in output layer. -
alpha
double alpha
momentum factor -
eta
double eta
learning rate -
inputLayer
smile.regression.NeuralNetwork.Layer inputLayer
input layer -
lambda
double lambda
weight decay factor, which is also a regularization term. -
net
smile.regression.NeuralNetwork.Layer[] net
layers of this net -
outputLayer
smile.regression.NeuralNetwork.Layer outputLayer
output layer -
p
int p
The dimensionality of data.
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Class smile.regression.RandomForest extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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error
double error
Out-of-bag estimation of RMSE, which is quite accurate given that enough trees have been grown (otherwise the OOB estimate can bias upward). -
importance
double[] importance
Variable importance. Every time a split of a node is made on variable the impurity criterion for the two descendent nodes is less than the parent node. Adding up the decreases for each individual variable over all trees in the forest gives a fast variable importance that is often very consistent with the permutation importance measure. -
monotonicRegression
double[] monotonicRegression
Values between [-1, 1] that represents monotonic regression coefficient for each attribute. It can be used to enforce model to keep monotonic relationship between target and the attribute. Positive value enforce target to be positively correlated with this feature. Positive value enforce target to be negatively correlated with this feature. Zero value turns off monotonic regression. -
trees
java.util.List<RegressionTree> trees
Forest of regression trees.
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Class smile.regression.RegressionTree extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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attributes
Attribute[] attributes
The attributes of independent variable. -
importance
double[] importance
Variable importance. Every time a split of a node is made on variable the impurity criterion for the two descendent nodes is less than the parent node. Adding up the decreases for each individual variable over the tree gives a simple measure of variable importance. -
maxNodes
int maxNodes
The maximum number of leaf nodes in the tree. -
monotonicRegression
double[] monotonicRegression
Values between [-1, 1] that represents monotonic regression coefficient for each attribute. It can be used to enforce model to keep monotonic relationship between target and the attribute. Positive value enforce target to be positively correlated with this feature. Positive value enforce target to be negatively correlated with this feature. Zero value turns off monotonic regression. -
mtry
int mtry
The number of input variables to be used to determine the decision at a node of the tree. -
nodeSize
int nodeSize
The number of instances in a node below which the tree will not split, setting nodeSize = 5 generally gives good results. -
numFeatures
int numFeatures
The number of binary features. -
root
smile.regression.RegressionTree.Node root
The root of the regression tree
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Package smile.stat.distribution
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Class smile.stat.distribution.AbstractDistribution extends java.lang.Object implements Serializable
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Class smile.stat.distribution.GaussianDistribution extends AbstractDistribution implements Serializable
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Serialized Fields
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boxMuller
java.lang.Double boxMuller
Cache the generated random number in Box-Muller algorithm. -
entropy
double entropy
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mu
double mu
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pdfConstant
double pdfConstant
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sigma
double sigma
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variance
double variance
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Class smile.stat.distribution.Mixture extends AbstractDistribution implements Serializable
- serialVersionUID:
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Serialized Fields
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components
java.util.List<Mixture.Component> components
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