Uses of Package
com.actelion.research.chem
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Classes in com.actelion.research.chem used by com.actelion.research.chem Class Description AbstractDepictor AbstractDepictor.DepictorLine AbstractDrawingObject AtomTypeList Canonizer CanonizerBaseValue CanonizerUtil.IDCODE_TYPE Coordinates Class to encapsulate 3D coordinatesDepictorTransformation DrawingObjectList Element ExtendedMolecule While the Molecule class covers all primary molecule information as atom and bond properties, the atom connectivity and coordinates, its derived class ExtendedMolecule handles secondary, i.e.IDCodeParserWithoutCoordinateInvention Typically you should use IDCodeParser instead of this class.Molecule Molecule3D MoleculeFilter Mutation MutationBiasProvider RingCollection SDFileMolecule SortedStringList StereoMolecule StructureInfo StructureSearchController StructureSearchDataSource StructureSearchSpecification -
Classes in com.actelion.research.chem used by com.actelion.research.chem.alignment3d Class Description Coordinates Class to encapsulate 3D coordinatesStereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.alignment3d.transformation Class Description Coordinates Class to encapsulate 3D coordinatesStereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.chemicalspaces Class Description SSSearcherWithIndex StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.chemicalspaces.synthon Class Description Coordinates Class to encapsulate 3D coordinatesStereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.combinatorialspace Class Description StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.conf Class Description Coordinates Class to encapsulate 3D coordinatesStereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.conf.torsionstrain Class Description Coordinates Class to encapsulate 3D coordinates -
Classes in com.actelion.research.chem used by com.actelion.research.chem.contrib Class Description StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.coords Class Description StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.descriptor Class Description StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.descriptor.flexophore Class Description Coordinates Class to encapsulate 3D coordinatesMolecule3D StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.descriptor.flexophore.calculator Class Description Coordinates Class to encapsulate 3D coordinatesExtendedMolecule While the Molecule class covers all primary molecule information as atom and bond properties, the atom connectivity and coordinates, its derived class ExtendedMolecule handles secondary, i.e.Molecule Molecule3D -
Classes in com.actelion.research.chem used by com.actelion.research.chem.descriptor.flexophore.example Class Description IDCodeParser -
Classes in com.actelion.research.chem used by com.actelion.research.chem.descriptor.flexophore.generator Class Description Coordinates Class to encapsulate 3D coordinatesMolecule3D StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.descriptor.flexophore.redgraph Class Description StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.descriptor.pharmacophoregraph Class Description StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.descriptor.pharmacophoretree Class Description RingCollection StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.docking Class Description Coordinates Class to encapsulate 3D coordinatesStereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.docking.receptorpharmacophore Class Description Coordinates Class to encapsulate 3D coordinatesStereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.docking.scoring Class Description Coordinates Class to encapsulate 3D coordinatesMolecule3D StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.docking.scoring.chemscore Class Description Coordinates Class to encapsulate 3D coordinates -
Classes in com.actelion.research.chem used by com.actelion.research.chem.docking.scoring.idoscore Class Description StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.docking.shape Class Description StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.forcefield Class Description StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.forcefield.mmff Class Description ExtendedMolecule While the Molecule class covers all primary molecule information as atom and bond properties, the atom connectivity and coordinates, its derived class ExtendedMolecule handles secondary, i.e.Molecule StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.interactionstatistics Class Description Molecule3D StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.io Class Description ExtendedMolecule While the Molecule class covers all primary molecule information as atom and bond properties, the atom connectivity and coordinates, its derived class ExtendedMolecule handles secondary, i.e.Molecule3D StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.io.pdb.converter Class Description Coordinates Class to encapsulate 3D coordinatesMolecule Molecule3D RingCollection StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.io.pdb.parser Class Description Molecule3D -
Classes in com.actelion.research.chem used by com.actelion.research.chem.mcs Class Description ExtendedMolecule While the Molecule class covers all primary molecule information as atom and bond properties, the atom connectivity and coordinates, its derived class ExtendedMolecule handles secondary, i.e.SSSearcher StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.name Class Description StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.phesa Class Description Coordinates Class to encapsulate 3D coordinatesStereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.phesa.pharmacophore Class Description Coordinates Class to encapsulate 3D coordinatesStereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.phesa.pharmacophore.pp Class Description Coordinates Class to encapsulate 3D coordinatesStereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.phesaflex Class Description Coordinates Class to encapsulate 3D coordinatesStereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.prediction Class Description StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.properties.complexity Class Description ExtendedMolecule While the Molecule class covers all primary molecule information as atom and bond properties, the atom connectivity and coordinates, its derived class ExtendedMolecule handles secondary, i.e.StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.properties.fractaldimension Class Description StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.reaction Class Description AbstractDrawingObject DepictorTransformation DrawingObjectList SSSearcher StereoMolecule StructureSearchController -
Classes in com.actelion.research.chem used by com.actelion.research.chem.reaction.mapping Class Description SSSearcher StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.chem.shredder Class Description StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.gui Class Description AbstractDepictor DrawingObjectList ExtendedMolecule While the Molecule class covers all primary molecule information as atom and bond properties, the atom connectivity and coordinates, its derived class ExtendedMolecule handles secondary, i.e.MarkushStructure MoleculeFilter StereoMolecule TextDrawingObject -
Classes in com.actelion.research.chem used by com.actelion.research.gui.clipboard Class Description StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.gui.clipboard.external Class Description StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.gui.dnd Class Description StereoMolecule StructureInfo -
Classes in com.actelion.research.chem used by com.actelion.research.gui.editor Class Description DrawingObjectList ExtendedMolecule While the Molecule class covers all primary molecule information as atom and bond properties, the atom connectivity and coordinates, its derived class ExtendedMolecule handles secondary, i.e.MarkushStructure StereoMolecule TextDrawingObject -
Classes in com.actelion.research.chem used by com.actelion.research.gui.generic Class Description AbstractDepictor AbstractDepictor.DepictorLine StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.jfx.gui.chem Class Description AbstractDepictor AbstractDepictor.DepictorLine StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.jfx.gui.misc Class Description StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.share.gui Class Description DepictorTransformation -
Classes in com.actelion.research.chem used by com.actelion.research.share.gui.editor Class Description AbstractDepictor MarkushStructure StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.share.gui.editor.actions Class Description StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.share.gui.editor.chem Class Description AbstractDepictor DepictorTransformation ExtendedMolecule While the Molecule class covers all primary molecule information as atom and bond properties, the atom connectivity and coordinates, its derived class ExtendedMolecule handles secondary, i.e.StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.share.gui.editor.geom Class Description StereoMolecule -
Classes in com.actelion.research.chem used by com.actelion.research.util Class Description Molecule StereoMolecule -
Classes in com.actelion.research.chem used by org.openmolecules.chem.conf.gen Class Description Coordinates Class to encapsulate 3D coordinatesStereoMolecule -
Classes in com.actelion.research.chem used by org.openmolecules.chem.conf.so Class Description Coordinates Class to encapsulate 3D coordinatesStereoMolecule