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template/nonrigidregister.hh
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1 /* -*- mia-c++ -*-
2  *
3  * This file is part of MIA - a toolbox for medical image analysis
4  * Copyright (c) Leipzig, Madrid 1999-2017 Gert Wollny
5  *
6  * MIA is free software; you can redistribute it and/or modify
7  * it under the terms of the GNU General Public License as published by
8  * the Free Software Foundation; either version 3 of the License, or
9  * (at your option) any later version.
10  *
11  * This program is distributed in the hope that it will be useful,
12  * but WITHOUT ANY WARRANTY; without even the implied warranty of
13  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14  * GNU General Public License for more details.
15  *
16  * You should have received a copy of the GNU General Public License
17  * along with MIA; if not, see <http://www.gnu.org/licenses/>.
18  *
19  */
20 
21 #ifndef mia_internal_nonrigidregister_hh
22 #define mia_internal_nonrigidregister_hh
23 
24 #include <mia/core/minimizer.hh>
27 #include <mia/template/dimtrait.hh>
29 
31 
32 template <int dim>
34 
50 template <int dim>
52 {
53 public:
55  typedef dimension_traits<dim> this_dim_traits;
56 
58  typedef typename this_dim_traits::PTransformation PTransformation;
59 
61  typedef typename this_dim_traits::Image Image;
62 
64  typedef typename this_dim_traits::PImage PImage;
65 
67  typedef typename this_dim_traits::PTransformationFactory PTransformationFactory;
68 
70  typedef typename this_dim_traits::FullCostList FullCostList;
71 
73  typedef typename this_dim_traits::Filter Filter;
74 
76  typedef typename this_dim_traits::FilterPluginHandler FilterPluginHandler;
77 
87  TNonrigidRegister(FullCostList& costs, PMinimizer minimizer,
88  PTransformationFactory transform_creation,
89  size_t mg_levels, int idx = -1);
90 
91 
93 
94 
99  void set_refinement_minimizer(PMinimizer minimizer);
100 
101 
109  PTransformation run(PImage src, PImage ref) const;
110 
111 
117  PTransformation run() const;
118 
119 private:
120  struct TNonrigidRegisterImpl<dim> *impl;
121 };
122 
124 
125 #endif
multicost.hh
TNonrigidRegister::FullCostList
this_dim_traits::FullCostList FullCostList
the type of the cost function list
Definition: template/nonrigidregister.hh:70
NS_MIA_BEGIN
#define NS_MIA_BEGIN
conveniance define to start the mia namespace
Definition: defines.hh:33
import_handler.hh
PMinimizer
CMinimizer::Pointer PMinimizer
Pointer type for the CMinimizer class.
Definition: minimizer.hh:221
TNonrigidRegister::this_dim_traits
dimension_traits< dim > this_dim_traits
the trait to handle dimension based typedefs
Definition: template/nonrigidregister.hh:55
dimtrait.hh
NS_MIA_END
#define NS_MIA_END
conveniance define to end the mia namespace
Definition: defines.hh:36
EXPORT_HANDLER
#define EXPORT_HANDLER
Definition: core/cost.hh:32
TNonrigidRegister::PTransformation
this_dim_traits::PTransformation PTransformation
the pointer type of the transformation
Definition: template/nonrigidregister.hh:58
TNonrigidRegister
Class for image registration.
Definition: template/nonrigidregister.hh:51
TNonrigidRegisterImpl
Definition: template/nonrigidregister.hh:33
transformfactory.hh
TNonrigidRegister::FilterPluginHandler
this_dim_traits::FilterPluginHandler FilterPluginHandler
the plug-in handler for the filters of the used dimensionality
Definition: template/nonrigidregister.hh:76
minimizer.hh
TNonrigidRegister::PTransformationFactory
this_dim_traits::PTransformationFactory PTransformationFactory
the pointer type of the transformation creation factory
Definition: template/nonrigidregister.hh:67
TNonrigidRegister::Filter
this_dim_traits::Filter Filter
filter type for the image data used in this non-rigid registration algorithm
Definition: template/nonrigidregister.hh:73
TNonrigidRegister::Image
this_dim_traits::Image Image
the type of the image data
Definition: template/nonrigidregister.hh:61
TNonrigidRegister::PImage
this_dim_traits::PImage PImage
the pointer type of the image data
Definition: template/nonrigidregister.hh:64