MacSyFinder
  • User Guide
  • Modeller Guide
    • Modelling Systems with MacSyFinder
      • Models Package
      • Macromolecular models
      • Helper Tool
      • Publishing/sharing models
      • Gallery of examples of MacSyFinder’s models
    • Carrying models from v1 to v2
      • Carrying models from v1 to v2
    • Frequently Asked Questions
      • Frequently Asked Questions
  • Developer Guide
MacSyFinder
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  • Modeller Guide
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Modeller Guide

Modelling Systems with MacSyFinder

  • Models Package
    • Structure of a macsy-model package
  • Macromolecular models
    • Principles, and how to write macsy-models definitions
  • Helper Tool
    • macsyprofile
  • Publishing/sharing models
    • Writing your own macsy-model package
    • Sharing your models
  • Gallery of examples of MacSyFinder’s models
    • Getting started with a (not-so-)simple example: modelling the T1SS
    • The case of T3SS and bacterial flagella, or how to distinguish homologous cellular machineries

Carrying models from v1 to v2

  • Carrying models from v1 to v2
    • 1. A very simple model.
    • 2. A model with homologs.
    • 3. A model with exchangeable homologs.

Frequently Asked Questions

  • Frequently Asked Questions
    • How to report an issue?
    • How to list several components or HMM profiles for a given function in the model?
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