libStatGen Software  1
TestPileup.h
1 /*
2  * Copyright (C) 2011 Regents of the University of Michigan
3  *
4  * This program is free software: you can redistribute it and/or modify
5  * it under the terms of the GNU General Public License as published by
6  * the Free Software Foundation, either version 3 of the License, or
7  * (at your option) any later version.
8  *
9  * This program is distributed in the hope that it will be useful,
10  * but WITHOUT ANY WARRANTY; without even the implied warranty of
11  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
12  * GNU General Public License for more details.
13  *
14  * You should have received a copy of the GNU General Public License
15  * along with this program. If not, see <http://www.gnu.org/licenses/>.
16  */
17 
18 #include "Pileup.h"
19 #include "PileupElementBaseQual.h"
20 
21 void testPileup();
22 
24 {
25 public:
26  // Overwrite to validate result.
27  virtual void analyze();
28 
29 };
30 
31 
32 class TestPileup : public Pileup<TestPileupElement>
33 {
34 public:
35  void testPileupPosition();
36 private:
37 };
This class inherits from the base class and stores base and qualities.
Class to perform a pileup of all reads by position, assuming the reads are coordinate sorted.
Definition: Pileup.h:59
virtual void analyze()
Perform the analysis associated with this class.
Definition: TestPileup.cpp:25