libStatGen Software  1
TestPileup.cpp
1 /*
2  * Copyright (C) 2011 Regents of the University of Michigan
3  *
4  * This program is free software: you can redistribute it and/or modify
5  * it under the terms of the GNU General Public License as published by
6  * the Free Software Foundation, either version 3 of the License, or
7  * (at your option) any later version.
8  *
9  * This program is distributed in the hope that it will be useful,
10  * but WITHOUT ANY WARRANTY; without even the implied warranty of
11  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
12  * GNU General Public License for more details.
13  *
14  * You should have received a copy of the GNU General Public License
15  * along with this program. If not, see <http://www.gnu.org/licenses/>.
16  */
17 #include "TestPileup.h"
18 
19 void testPileup()
20 {
21  TestPileup pileupTest;
22  pileupTest.testPileupPosition();
23 }
24 
26 {
27  assert(strcmp(getChromosome(), "") == 0);
28  assert(getRefPosition() == 14000);
29 }
30 
31 
32 void TestPileup::testPileupPosition()
33 {
34  assert(pileupPosition(14000) == 0);
35  assert(pileupHead == 14000);
36  assert(pileupStart == 14000);
37  assert(pileupTail == 14000);
38 
39  bool caught = false;
40  try
41  {
42  pileupPosition(13999);
43  }
44  catch(std::exception& e)
45  {
46  caught = true;
47  assert(strcmp(e.what(), "Overflow on the pileup buffer: specifiedPosition = 13999, pileup buffer start position: 14000, pileup buffer end position: 15024") == 0);
48  }
49  assert(caught);
50 
51  caught = false;
52  try
53  {
54  pileupPosition(15025);
55  }
56  catch(std::exception& e)
57  {
58  caught = true;
59  assert(strcmp(e.what(), "Overflow on the pileup buffer: specifiedPosition = 15025, pileup buffer start position: 14000, pileup buffer end position: 15024") == 0);
60  }
61  assert(caught);
62 }
virtual void analyze()
Perform the analysis associated with this class.
Definition: TestPileup.cpp:25
int32_t getRefPosition() const
Get the reference position stored in this element.
Definition: PileupElement.h:54
const char * getChromosome() const
Get the chromosome name stored in this element.
Definition: PileupElement.h:51