libStatGen Software
1
|
This is the complete list of members for SamFlag, including all inherited members.
DUPLICATE (defined in SamFlag) | SamFlag | static |
FAILED_QUALITY (defined in SamFlag) | SamFlag | static |
FIRST_READ (defined in SamFlag) | SamFlag | static |
FRAGMENT_INFO (defined in SamFlag) | SamFlag | static |
FRAGMENT_SHIFT (defined in SamFlag) | SamFlag | static |
getFragmentType(uint16_t flag) (defined in SamFlag) | SamFlag | inlinestatic |
isDuplicate(uint16_t flag) (defined in SamFlag) | SamFlag | inlinestatic |
isFirstFragment(uint16_t flag) | SamFlag | inlinestatic |
isLastFragment(uint16_t flag) | SamFlag | inlinestatic |
isMapped(uint16_t flag) (defined in SamFlag) | SamFlag | inlinestatic |
isMateMapped(uint16_t flag) (defined in SamFlag) | SamFlag | inlinestatic |
isMateReverse(uint16_t flag) (defined in SamFlag) | SamFlag | inlinestatic |
isMidFragment(uint16_t flag) | SamFlag | inlinestatic |
isPaired(uint16_t flag) (defined in SamFlag) | SamFlag | inlinestatic |
isProperPair(uint16_t flag) (defined in SamFlag) | SamFlag | inlinestatic |
isQCFailure(uint16_t flag) (defined in SamFlag) | SamFlag | inlinestatic |
isReverse(uint16_t flag) (defined in SamFlag) | SamFlag | inlinestatic |
isSecondary(uint16_t flag) (defined in SamFlag) | SamFlag | inlinestatic |
isUnknownFragment(uint16_t flag) | SamFlag | inlinestatic |
MATE_REVERSED (defined in SamFlag) | SamFlag | static |
MATE_UNMAPPED (defined in SamFlag) | SamFlag | static |
PAIRED (defined in SamFlag) | SamFlag | static |
PROPER_PAIR (defined in SamFlag) | SamFlag | static |
REVERSE (defined in SamFlag) | SamFlag | static |
SECOND_READ (defined in SamFlag) | SamFlag | static |
SECONDARY_ALIGNMENT (defined in SamFlag) | SamFlag | static |
setDuplicate(uint16_t &flag) | SamFlag | inlinestatic |
setNotDuplicate(uint16_t &flag) | SamFlag | inlinestatic |
setUnmapped(uint16_t &flag) | SamFlag | inlinestatic |
SUPPLEMENTARY_ALIGNMENT (defined in SamFlag) | SamFlag | static |
UNMAPPED (defined in SamFlag) | SamFlag | static |