18 #include "ReadFiles.h" 19 #include "WriteFiles.h" 20 #include "ValidationTest.h" 21 #include "BamIndexTest.h" 22 #include "ModifyVar.h" 24 #include "SamFileTest.h" 25 #include "TestEquals.h" 26 #include "TestFilter.h" 27 #include "ShiftIndels.h" 28 #include "TestPileup.h" 29 #include "TestPosList.h" 30 #include "TestCigarHelper.h" 31 #include "TestSamRecordPool.h" 32 #include "TestSamCoordOutput.h" 33 #include "TestSamRecordHelper.h" 35 int main(
int argc,
char ** argv)
40 #ifdef __ZLIB_AVAILABLE__ 44 testAddHeaderAndTagToFile(
"testFiles/testSam.sam",
45 "results/addedTagToSam.bam");
46 testAddHeaderAndTagToFile(
"testFiles/testSam.sam",
47 "results/addedTagToSam.sam");
49 #ifdef __ZLIB_AVAILABLE__ 50 testAddHeaderAndTagToFile(
"testFiles/testBam.bam",
51 "results/addedTagToBam.sam");
52 testAddHeaderAndTagToFile(
"testFiles/testBam.bam",
53 "results/addedTagToBam.bam");
56 testValidateSortedRead();
65 #ifdef __ZLIB_AVAILABLE__ 87 testSamRecordHelper();
91 modifyFirstBaseLong();