- c -
- checkFloat()
: SamRecord
- checkInteger()
: SamRecord
- checkRead()
: GenomeSequence
- checkSequence()
: SamRecordHelper
- checkString()
: SamRecord
- checkTag()
: SamRecord
- Cigar()
: Cigar
- CigarOperator()
: Cigar::CigarOperator
- CigarRoller()
: CigarRoller
- clear()
: BaseComposition
, CigarRoller
, ReusableVector< DATA_TYPE >
, SamReferenceInfo
, SamValidationErrors
- clearTags()
: SamRecord
- clipOnMismatchThreshold()
: SamFilter
- close()
: GlfFile
- Close()
: SamFile
- closeFile()
: FastQFile
- combineChromPos()
: SamHelper
- copy()
: GlfHeader
, GlfRefSection
, SamFileHeader
- create()
: MemoryMap
, MemoryMapArray< elementT, indexT, cookieVal, versionVal, accessorFunc, setterFunc, elementCount2BytesFunc, arrayHeaderClass >
- createCopy()
: SamHeaderHD
, SamHeaderPG
, SamHeaderRecord
, SamHeaderRG
, SamHeaderSQ
- createMDTag()
: SamTags