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Hierarchy For Package pal.treesearch
Package Hierarchies:
All Packages
Class Hierarchy
java.lang.Object
pal.treesearch.
AbstractLeafNode
pal.treesearch.
ConstrainedLeafNode
(implements pal.treesearch.
ConstrainedNode
)
pal.treesearch.
FreeLeafNode
(implements pal.treesearch.
FreeNode
)
pal.treesearch.
AbstractParentableConstrainedNode
(implements pal.treesearch.
ParentableConstrainedNode
)
pal.treesearch.
ConstrainedInternalNode
(implements pal.treesearch.
ConstrainedNode
, pal.treesearch.
GeneralOptimisable
)
pal.treesearch.
PivotNode
(implements pal.treesearch.
FreeNode
, pal.treesearch.
GeneralOptimisable
, pal.treesearch.
GroupLeader
, pal.treesearch.
ParentableConstrainedNode
, pal.treesearch.
RootAccess
)
pal.treesearch.
BranchAccess.Utils
pal.treesearch.
FixedBSRDTGlobalClockModel
(implements pal.treesearch.
ConstraintModel
, pal.treesearch.
ConstraintModel.GroupManager
, pal.eval.
MolecularClockLikelihoodModel.HeightConverter
, pal.misc.
NeoParameterized
)
pal.treesearch.
FixedSRDTGlobalClockModel
(implements pal.treesearch.
ConstraintModel
, pal.treesearch.
ConstraintModel.GroupManager
, pal.eval.
MolecularClockLikelihoodModel.HeightConverter
)
pal.treesearch.
FreeBranch
(implements pal.treesearch.
GeneralOptimisable
, pal.treesearch.
RootAccess
)
pal.treesearch.
FreeInternalNode
(implements pal.treesearch.
FreeNode
)
pal.treesearch.
GeneralConstraintGroupManager
pal.treesearch.
GeneralConstraintGroupManager.Store
pal.treesearch.
GeneralConstructionTool
pal.treesearch.
GeneralLikelihoodSearcher
pal.treesearch.
GlobalClockModel
(implements pal.treesearch.
ConstraintModel
, pal.treesearch.
ConstraintModel.GroupManager
, pal.eval.
MolecularClockLikelihoodModel.HeightConverter
, pal.misc.
NeoParameterized
)
pal.treesearch.
HeightInformationUser
pal.treesearch.
MRDTGlobalClockModel
(implements pal.treesearch.
ConstraintModel
, pal.treesearch.
ConstraintModel.GroupManager
, pal.eval.
MolecularClockLikelihoodModel.HeightConverter
, pal.misc.
NeoParameterized
)
pal.treesearch.
SearcherUtils
pal.treesearch.
SearchMonitor.Utils
pal.treesearch.
SRDTGlobalClockModel
(implements pal.treesearch.
ConstraintModel
, pal.treesearch.
ConstraintModel.GroupManager
, pal.eval.
MolecularClockLikelihoodModel.HeightConverter
, pal.misc.
NeoParameterized
)
pal.treesearch.
TreeSearchTool
pal.treesearch.
UnconstrainedModel
(implements pal.treesearch.
ConstraintModel
)
pal.treesearch.
UnrootedMLSearcher
(implements pal.algorithmics.
Markable
, pal.algorithmics.
StateProvider
, pal.tree.
UnrootedTreeInterface.Instructee
)
pal.treesearch.
UnrootedMLSearcher.StateObject
Interface Hierarchy
pal.treesearch.
BranchAccess
pal.treesearch.
Constants
pal.treesearch.
ConstrainedNode.HeightAdjustment
pal.treesearch.
ConstraintModel
pal.treesearch.
ConstraintModel.GroupManager
pal.treesearch.
GeneralConstraintGroupManager.LikelihoodScoreAccess
pal.treesearch.
GeneralOptimisable
pal.treesearch.
GeneralTreeComponent
pal.treesearch.
ConstrainedNode
pal.treesearch.
FreeNode
pal.treesearch.
GroupLeader
pal.treesearch.
NodeAccess
pal.treesearch.
ParentableConstrainedNode
pal.treesearch.
RootAccess
pal.treesearch.
SearchMonitor
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