Package | Description |
---|---|
pal.eval |
Classes for evaluating evolutionary hypothesis (chi-square and likelihood
criteria) and estimating model parameters.
|
pal.misc |
Classes that don't fit elsewhere ;^)
|
pal.substmodel |
Classes describing substitution models, i.e.
|
Modifier and Type | Method | Description |
---|---|---|
void |
FastLikelihoodCalculator.parametersChanged(PalObjectEvent pe) |
|
void |
GeneralLikelihoodCalculator.parametersChanged(PalObjectEvent pe) |
|
void |
FastLikelihoodCalculator.structureChanged(PalObjectEvent pe) |
|
void |
GeneralLikelihoodCalculator.structureChanged(PalObjectEvent pe) |
Modifier and Type | Method | Description |
---|---|---|
protected void |
PalObjectListener.EventGenerator.fireParametersChangedEvent(PalObjectEvent pe) |
Called by subclasses to fire a specific PalObjectEvent on all listeners
|
protected void |
PalObjectListener.EventGenerator.fireStructureChangedEvent(PalObjectEvent pe) |
Called by subclasses to fire a specific PalObjectEvent on all listeners
|
void |
PalObjectListener.parametersChanged(PalObjectEvent pe) |
Signifies that parametric valued governing the state of this Object have changed.
|
void |
PalObjectListener.structureChanged(PalObjectEvent pe) |
Signifies that the structure of the object has changed (for example in trees to topology
has changed)
|
Modifier and Type | Method | Description |
---|---|---|
protected void |
AbstractRateMatrix.fireParametersChangedEvent(PalObjectEvent pe) |
|
void |
CachedRateMatrix.parametersChanged(PalObjectEvent pe) |
|
void |
CachedRateMatrix.structureChanged(PalObjectEvent pe) |