public class DemographicLikelihoodValue extends LikelihoodValue
logL, rateAtSite, siteLogL
Constructor | Description |
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DemographicLikelihoodValue(SitePattern sp) |
Parameter taking a site pattern.
|
Modifier and Type | Method | Description |
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double |
compute() |
compute log-likelihood
for current branch lengths and model
return negative log-likelihood
|
getModel, getSitePattern, getTree, optimiseParameters, optimiseParameters, renewSitePattern, setModel, setTree
public DemographicLikelihoodValue(SitePattern sp)
public double compute()
compute
in class LikelihoodValue