Units
public class IntervalsExtractor extends java.lang.Object implements Units
DAYS, EXPECTED_SUBSTITUTIONS, GENERATIONS, MONTHS, SAMPLE, SHORT_UNIT_NAMES, UNIT_NAMES, UNKNOWN, YEARS
Constructor | Description |
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IntervalsExtractor() |
Modifier and Type | Method | Description |
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static CoalescentIntervals |
extractFromClockTree(Tree tree) |
extracts intervals from clock tree.
|
static CoalescentIntervals |
extractFromClockTree(Tree tree,
double minSize) |
extracts intervals from clock tree.
|
static CoalescentIntervals |
extractFromTree(Tree tree) |
extracts intervals from serial clock tree.
|
static CoalescentIntervals |
extractFromTree(Tree tree,
MutationRateModel muModel) |
extracts intervals in generation times from serial clock tree (in mutation times)
after taking into account mutation rate model.
|
public static CoalescentIntervals extractFromClockTree(Tree tree)
public static CoalescentIntervals extractFromClockTree(Tree tree, double minSize)
public static CoalescentIntervals extractFromTree(Tree tree, MutationRateModel muModel)
public static CoalescentIntervals extractFromTree(Tree tree)