public class CodonTableUtils
extends java.lang.Object
Constructor | Description |
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CodonTableUtils() |
Modifier and Type | Method | Description |
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static char[] |
convertNucleotideToAminoAcid(char[] nucleotideSequence,
int startingPosition,
int length,
boolean reverse,
CodonTable translator) |
Translates a Nucleotide sequence into a Amino Acid sequence
|
static java.lang.String |
convertNucleotideToAminoAcid(java.lang.String nucleotideSequence,
int startingPosition,
int length,
boolean reverse,
CodonTable translator) |
Translates a Nucleotide sequence into a Amino Acid sequence
|
public static final java.lang.String convertNucleotideToAminoAcid(java.lang.String nucleotideSequence, int startingPosition, int length, boolean reverse, CodonTable translator)
public static final char[] convertNucleotideToAminoAcid(char[] nucleotideSequence, int startingPosition, int length, boolean reverse, CodonTable translator)
nucleotideSequence
- - the base nucleotide sequence as a char arraystarting
- position - the starting position to begin reading fromlength
- - the length of the reading frame (in nucleotide units -
should be a multiple of 3, if not remainder is truncated!)reverse
- - if true works backwards with codon at starting
position being last in translation (codon read in reverse as well).
Else reads forwards.translator
- - the nucleotide translator to use for translation
nucleotides into amino acids.