java.io.Serializable
, IdGroup
, Report
, Units
, UnitsProvider
, Tree
SUPGMATree
public class ClusterTree extends SimpleTree
Modifier and Type | Class | Description |
---|---|---|
static interface |
ClusterTree.ClusteringMethod |
An interface for describing Clustering methods
To be updated to cope with Ward's method and others...
|
IdGroup.Utils
Tree.TreeBase
Modifier and Type | Field | Description |
---|---|---|
static ClusterTree.ClusteringMethod |
COMPLETE_LINKAGE |
|
static ClusterTree.ClusteringMethod |
SINGLE_LINKAGE |
|
static ClusterTree.ClusteringMethod |
UPGMA |
|
static ClusterTree.ClusteringMethod |
WPGMA |
DAYS, EXPECTED_SUBSTITUTIONS, GENERATIONS, MONTHS, SAMPLE, SHORT_UNIT_NAMES, UNIT_NAMES, UNKNOWN, YEARS
Constructor | Description |
---|---|
ClusterTree(DistanceMatrix dm,
ClusterTree.ClusteringMethod cm) |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
createNodeList, findNode, getAttribute, getCopy, getExternalNode, getExternalNodeCount, getIdCount, getIdentifier, getInternalNode, getInternalNodeCount, getRoot, getUnits, report, reroot, reroot, setAttribute, setIdentifier, setRoot, setUnits, toString, whichIdNumber
public static final ClusterTree.ClusteringMethod UPGMA
public static final ClusterTree.ClusteringMethod WPGMA
public static final ClusterTree.ClusteringMethod SINGLE_LINKAGE
public static final ClusterTree.ClusteringMethod COMPLETE_LINKAGE
public ClusterTree(DistanceMatrix dm, ClusterTree.ClusteringMethod cm)