public class SearcherUtils
extends java.lang.Object
Constructor | Description |
---|---|
SearcherUtils() |
Modifier and Type | Method | Description |
---|---|---|
static int |
createMatchups(int numberOfSites,
int numberOfStates,
int[] sitePatternMatchup,
int[] patternStateMatchup,
int[] sequence) |
Fill in matchup arrays
|
static java.lang.String[][] |
split(java.lang.String[] leafNames,
MersenneTwisterFast r) |
public static final int createMatchups(int numberOfSites, int numberOfStates, int[] sitePatternMatchup, int[] patternStateMatchup, int[] sequence)
numberOfSites
- The number of sitesnumberOfStates
- The number of statessitePatternMatchup
- Should be of length numberOfSitespatternStateMatchup
- Should be of length numberOfStates+1sequence
- the sequencepublic static final java.lang.String[][] split(java.lang.String[] leafNames, MersenneTwisterFast r)