Package | Description |
---|---|
pal.eval |
Classes for evaluating evolutionary hypothesis (chi-square and likelihood
criteria) and estimating model parameters.
|
pal.treesearch |
Modifier and Type | Method | Description |
---|---|---|
MolecularClockLikelihoodModel.External |
MolecularClockLikelihoodModel.Instance.createNewExternal(MolecularClockLikelihoodModel.HeightConverter converter) |
|
MolecularClockLikelihoodModel.Internal |
MolecularClockLikelihoodModel.Instance.createNewInternal(MolecularClockLikelihoodModel.HeightConverter converter) |
|
MolecularClockLikelihoodModel.Leaf |
MolecularClockLikelihoodModel.Instance.createNewLeaf(MolecularClockLikelihoodModel.HeightConverter converter,
PatternInfo pattern,
int[] patternStateMatchup) |
Modifier and Type | Class | Description |
---|---|---|
class |
FixedBSRDTGlobalClockModel |
|
class |
FixedSRDTGlobalClockModel |
|
class |
GlobalClockModel |
|
class |
MRDTGlobalClockModel |
|
class |
SRDTGlobalClockModel |