Package | Description |
---|---|
pal.misc |
Classes that don't fit elsewhere ;^)
|
pal.substmodel |
Classes describing substitution models, i.e.
|
Constructor | Description |
---|---|
ParameterizedDoubleBundle(MutableDouble[] parameters) |
Modifier and Type | Method | Description |
---|---|---|
static MutableDouble |
YangCodonModel.createKappaStore(double initialValue) |
|
static MutableDouble |
YangCodonModel.createKappaStore(double initialValue,
java.lang.String name) |
|
static MutableDouble |
YangCodonModel.createOmegaStore(double initialValue) |
|
static MutableDouble |
YangCodonModel.createOmegaStore(double initialValue,
java.lang.String name) |
Constructor | Description |
---|---|
NeutralSelectionRateMatrixGroup(MutableDouble kappaStore,
double[] freqs,
CodonTable table) |
|
PositiveSelectionRateMatrixGroup(MutableDouble kappaStore,
MutableDouble omegaStore,
double[] freqs,
CodonTable table) |