Package | Description |
---|---|
pal.tree |
Classes for providing the data structure of
trees, for constructing and modifying trees, and for parameterizing
trees (e.g., clock constraint).
|
Modifier and Type | Method | Description |
---|---|---|
static SplitSystem |
SplitUtils.getSplits(IdGroup idGroup,
Tree tree) |
creates a split system from a tree
(using a pre-specified order of sequences)
|
static SplitSystem |
SplitUtils.getSplits(Tree tree) |
creates a split system from a tree
(using tree-induced order of sequences)
|
Modifier and Type | Method | Description |
---|---|---|
static double |
TreeUtils.getRobinsonFouldsDistance(SplitSystem s1,
Tree t2) |
computes Robinson-Foulds (1981) distance between two trees
|
static double |
TreeUtils.getRobinsonFouldsRescaledDistance(SplitSystem s1,
Tree t2) |
computes Robinson-Foulds (1981) distance between two trees
rescaled to a number between 0 and 1
|