Package | Description |
---|---|
pal.substmodel |
Classes describing substitution models, i.e.
|
Modifier and Type | Class | Description |
---|---|---|
class |
F81 |
Felsenstein 1981 model of nucleotide evolution
|
class |
F84 |
Felsenstein 1984 (PHYLIP) model of nucleotide evolution
|
class |
GTR |
GTR (general time reversible) model of nucleotide evolution
Lanave, C., G.
|
class |
HKY |
Hasegawa-Kishino-Yano model of nucleotide evolution
Hasegawa, M., H.
|
class |
TN |
Tamura-Nei model of nucleotide evolution
Tamura, K.
|
Modifier and Type | Method | Description |
---|---|---|
static NucleotideModel |
NucleotideModel.getInstance(int modelID,
double[] params,
double[] freq) |
Create nucleotide substitution model according to model type
|