Package | Description |
---|---|
pal.coalescent |
Classes to model population genetic processes using the coalescent.
|
pal.io |
Classes for simple (formatted) input/output from/to files,
strings and standard-in/out streams.
|
pal.mep |
Classes for the analysis of "measurably evolving populations" (mep).
|
pal.substmodel |
Classes describing substitution models, i.e.
|
Class | Description |
---|---|
FormattedOutput |
tools to simplify formatted output to a stream
|
Class | Description |
---|---|
FormattedInput |
tools to simplify formatted input from an input stream
|
FormattedOutput |
tools to simplify formatted output to a stream
|
InputSource |
convenience class to open input streams
linked to files, stdin, and strings
|
NexusParseException |
Exception class for the NexusParser.
|
OutputTarget |
convenience class to create output streams linked to
files, stdout, and strings
|
Class | Description |
---|---|
FormattedOutput |
tools to simplify formatted output to a stream
|
Class | Description |
---|---|
FormattedOutput |
tools to simplify formatted output to a stream
|