Package | Description |
---|---|
pal.alignment |
Classes dealing with sequence alignments, including methods for reading
and printing in several possible formats, as well as rearranging and
concatenating.
|
pal.popgen |
Classes for providing 'classical' population genetics analyses.
|
Modifier and Type | Interface | Description |
---|---|---|
interface |
CharacterAlignment |
This interface is designed to hold quantitative character states.
|
Modifier and Type | Class | Description |
---|---|---|
class |
SimpleCharacterAlignment |
This provides a basic implementation of CharacterAlignment.
|
Modifier and Type | Class | Description |
---|---|---|
class |
LinkageDisequilibrium |
This class calculates D' and r^2 estimates of linkage disequilibrium.
|