IndelAnnotatedAlignment
public class IndelAlignment extends AbstractAlignment
IdGroup.Utils
idGroup, numSeqs, numSites
Constructor | Description |
---|---|
IndelAlignment(Alignment a,
boolean anchored) |
Basic constructor.
|
Modifier and Type | Method | Description |
---|---|---|
char |
getData(int seq,
int site) |
sequence alignment at (sequence, site)
|
getAlignedSequenceString, getChar, getDataType, getIdCount, getIdentifier, getLength, getSequenceCount, getSiteCount, getState, getStates, guessDataType, isGap, isUnknownState, report, setDataType, setIdentifier, toString, whichIdNumber
public IndelAlignment(Alignment a, boolean anchored)
anchored
- sets to score anchored indels as same positionpublic char getData(int seq, int site)
getData
in interface Alignment
getData
in class AbstractAlignment