AnnotationAlignment
, CharacterAlignment
, RateMatrix
, SubstitutionModel
AbstractAlignment
, AbstractRateMatrix
, AminoAcidModel
, BLOSUM62
, BootstrappedAlignment
, CachedRateMatrix
, ClusterTree
, CoalescentIntervals
, CodonModel
, ConcatenatedAlignment
, ConcatenatedAnnotatedAlignment
, ConstantMutationRate
, ConstantPopulation
, ConstExpConst
, ConstExpGrowth
, CPREV
, Dayhoff
, DemographicModel
, ExpandingPopulation
, ExponentialGrowth
, F81
, F84
, GammaRates
, GapBalancedAlignment
, GeneralRateDistributionSubstitutionModel
, GTR
, HKY
, IndelAlignment
, IndelAnnotatedAlignment
, InvariableSites
, JTT
, JumbledAlignment
, KishinoHasegawaTest
, ModelSupport
, MTREV24
, MultiLocusAnnotatedAlignment
, MutationRateModel
, NeighborJoiningTree
, NucleotideModel
, RateDistribution
, ReadAlignment
, ReadAlignmentOld
, ReadTree
, ShimodairaHasegawaTest
, SimpleAlignment
, SimpleAnnotatedAlignment
, SimpleCharacterAlignment
, SimpleTree
, SimulatedAlignment
, SingleClassSubstitutionModel
, SitePattern
, SkylinePlot
, SteppedMutationRate
, StrippedAlignment
, StrippedAnnotatedAlignment
, SUPGMATree
, TN
, Tree.TreeBase
, TwoStateModel
, UniformRate
, UPGMATree
, VT
, WAG
, WindowedMutationRate
, YangCodonModel
, YangCodonModel.SimpleNeutralSelection
, YangCodonModel.SimplePositiveSelection
public interface Report
Modifier and Type | Method | Description |
---|---|---|
void |
report(java.io.PrintWriter out) |
print human readable report (e.g., on parameters and associated model)
|