Package | Description |
---|---|
pal.treesearch |
Modifier and Type | Method | Description |
---|---|---|
static SearchMonitor |
SearchMonitor.Utils.createNullMonitor() |
Modifier and Type | Method | Description |
---|---|---|
double |
GeneralLikelihoodSearcher.optimiseAllFullHeirarchy(StoppingCriteria mainStopper,
StoppingCriteria subStopper,
MultivariateMinimum rateMinimiser,
int fxFracDigits,
int xFracDigits,
AlgorithmCallback callback,
SearchMonitor monitor,
MinimiserMonitor rateMonitor) |
|
double |
GeneralLikelihoodSearcher.optimiseAllPlusSubstitutionModel(StoppingCriteria stopper,
MultivariateMinimum rateMinimiser,
MultivariateMinimum substitutionModelMinimiser,
int fxFracDigits,
int xFracDigits,
AlgorithmCallback callback,
SearchMonitor monitor,
int substitutionModelOptimiseFrequency,
MinimiserMonitor substitutionModelMonitor,
MinimiserMonitor rateMonitor) |
|
double |
GeneralLikelihoodSearcher.optimiseAllSimple(StoppingCriteria stopper,
MultivariateMinimum rateMinimiser,
int fxFracDigits,
int xFracDigits,
AlgorithmCallback callback,
SearchMonitor monitor,
MinimiserMonitor rateMonitor) |
|
double |
GeneralLikelihoodSearcher.optimiseAllSimple(StoppingCriteria stopper,
MultivariateMinimum rateMinimiser,
int fxFracDigits,
int xFracDigits,
AlgorithmCallback callback,
SearchMonitor monitor,
MinimiserMonitor rateMonitor,
int groupOptimistionType) |
|
double |
GeneralLikelihoodSearcher.optimiseAllSimpleHeirarchy(StoppingCriteria stopper,
MultivariateMinimum rateMinimiser,
int fxFracDigits,
int xFracDigits,
AlgorithmCallback callback,
SearchMonitor monitor,
MinimiserMonitor rateMonitor) |
|
double |
GeneralLikelihoodSearcher.optimiseGeneral(StoppingCriteria stopper,
int fracDigits,
AlgorithmCallback callback,
SearchMonitor monitor) |