UnconstrainedLikelihoodModel.Leaf
public static final class SimpleUnconstrainedLikelihoodModel.LeafImpl extends java.lang.Object implements UnconstrainedLikelihoodModel.Leaf
Constructor | Description |
---|---|
LeafImpl(LHCalculator.Leaf base,
SubstitutionModel model) |
Modifier and Type | Method | Description |
---|---|---|
UnconstrainedLikelihoodModel.Leaf |
getCopy() |
Create a new Leaf calculator that has exactly the same properties as this one (but is different such that it may be used independently)
|
ConditionalProbabilityStore |
getExtendedConditionalProbabilities(double distance) |
|
ConditionalProbabilityStore |
getFlatConditionalProbabilities() |
public LeafImpl(LHCalculator.Leaf base, SubstitutionModel model)
public ConditionalProbabilityStore getFlatConditionalProbabilities()
getFlatConditionalProbabilities
in interface UnconstrainedLikelihoodModel.Leaf
public ConditionalProbabilityStore getExtendedConditionalProbabilities(double distance)
getExtendedConditionalProbabilities
in interface UnconstrainedLikelihoodModel.Leaf
public UnconstrainedLikelihoodModel.Leaf getCopy()
UnconstrainedLikelihoodModel.Leaf
getCopy
in interface UnconstrainedLikelihoodModel.Leaf