Package | Description |
---|---|
pal.supgma | |
pal.tree |
Classes for providing the data structure of
trees, for constructing and modifying trees, and for parameterizing
trees (e.g., clock constraint).
|
Modifier and Type | Class | Description |
---|---|---|
class |
SUPGMATree |
constructs an SUPGMA tree from pairwise distances.
|
Modifier and Type | Class | Description |
---|---|---|
class |
ClusterTree |
|
class |
NeighborJoiningTree |
constructs a neighbor-joining tree from pairwise distances
Saitou, N., and Nei, M., (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. |
class |
ReadTree |
constructs a tree reading in a New Hampshire treefile, taking care
for internal labels and branch lengths and binary/nonbinary and
rooted/unrooted trees
|
class |
UPGMATree |
Deprecated.
Use ClusterTree
|