IdGroup
, Report
, java.io.Serializable
, TableReport
SimpleCharacterAlignment
public interface CharacterAlignment extends java.io.Serializable, IdGroup, Report, TableReport
IdGroup.Utils
Modifier and Type | Field | Description |
---|---|---|
static double |
MISSING |
Modifier and Type | Method | Description |
---|---|---|
java.lang.String |
getEnvironmentName(int trait) |
Return name of the environments for this trait number
|
int |
getSequenceCount() |
Return number of sequences(taxa) in this alignment
|
double |
getTrait(int seq,
int trait) |
Return the trait value for a given sequence (taxon) and trait number
|
int |
getTraitCount() |
Return number of traits for each sequence in this alignment
|
java.lang.String |
getTraitName(int trait) |
Return name of the trait for this trait number
|
getIdCount, getIdentifier, setIdentifier, whichIdNumber
getTableColumnNames, getTableData, getTableTitle
static final double MISSING
java.lang.String getTraitName(int trait)
java.lang.String getEnvironmentName(int trait)
double getTrait(int seq, int trait)
int getSequenceCount()
int getTraitCount()