Package | Description |
---|---|
pal.eval |
Classes for evaluating evolutionary hypothesis (chi-square and likelihood
criteria) and estimating model parameters.
|
Modifier and Type | Method | Description |
---|---|---|
LHCalculator.Generator |
LHCalculator.Factory.createSeries(int numberOfCategories,
DataType dt) |
Modifier and Type | Method | Description |
---|---|---|
static UnconstrainedLikelihoodModel.Instance |
SimpleUnconstrainedLikelihoodModel.createInstance(LHCalculator.Generator base,
SubstitutionModel model) |
Create a SimpleUnconstrainedLikelihoodModel instance
|
LHCalculator.External |
LHCalculator.Generator.createNewExternal(LHCalculator.Generator parentGenerator) |
An obscure method, primarily used by the High Accuracy calculator
|
LHCalculator.Internal |
LHCalculator.Generator.createNewInternal(LHCalculator.Generator patentGenerator) |
An obscure method, primarily used by the High Accuracy calculator
|
LHCalculator.Leaf |
LHCalculator.Generator.createNewLeaf(int[] patternStateMatchup,
int numberOfPatterns,
LHCalculator.Generator parentGenerator) |
Constructor | Description |
---|---|
SimpleLeafCalculator(int[] patternStateMatchup,
int numberOfPatterns,
int numberOfStates,
int numberOfCategories,
LHCalculator.Generator parent) |