Package | Description |
---|---|
pal.distance |
Classes for reading and generating distance matrices, including computation
of pairwise distances for sequence data (maximum-likelihood and observed
distances).
|
pal.eval |
Classes for evaluating evolutionary hypothesis (chi-square and likelihood
criteria) and estimating model parameters.
|
pal.supgma | |
pal.tree |
Classes for providing the data structure of
trees, for constructing and modifying trees, and for parameterizing
trees (e.g., clock constraint).
|
Class | Description |
---|---|
DistanceMatrix |
storage for pairwise distance matrices.
|
DistanceMatrixAccess | |
DistanceMatrixGenerator | |
DistanceParseException |
exception thrown by ReadDistanceMatrix
|
Class | Description |
---|---|
DistanceMatrix |
storage for pairwise distance matrices.
|
Class | Description |
---|---|
DistanceMatrix |
storage for pairwise distance matrices.
|
DistanceMatrixAccess | |
DistanceMatrixGenerator |
Class | Description |
---|---|
DistanceMatrix |
storage for pairwise distance matrices.
|
DistanceMatrixGenerator |