Package org.jmol.popup
Class JmolPopup
- java.lang.Object
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- org.jmol.popup.GenericPopup
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- org.jmol.popup.JmolGenericPopup
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- org.jmol.popup.JmolPopup
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- All Implemented Interfaces:
GenericMenuInterface
- Direct Known Subclasses:
AwtJmolPopup
,JSJmolPopup
public abstract class JmolPopup extends JmolGenericPopup
An abstract popup class that is instantiated for a given platform and context as one of:-- abstract JmolPopup -- AwtJmolPopup -- JSJmolPopup
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Field Summary
Fields Modifier and Type Field Description private int
ac
private java.lang.String
altlocs
private javajs.util.Lst<SC>
ChargesOnly
private javajs.util.Lst<java.lang.String>
cnmrPeaks
private java.lang.String
configurationSelected
private java.lang.String
currentFrankId
private boolean
fileHasUnitCell
private javajs.util.Lst<SC>
FileMolOnly
private javajs.util.Lst<SC>
FileUnitOnly
private javajs.util.Lst<SC>
FramesOnly
private java.lang.Object[][]
frankList
private int[]
group3Counts
private java.lang.String
group3List
private boolean
hasSymmetry
private boolean
haveBFactors
private boolean
haveCharges
private javajs.util.Lst<java.lang.String>
hnmrPeaks
private boolean
isLastFrame
private boolean
isMultiConfiguration
private boolean
isMultiFrame
private boolean
isPDB
private boolean
isUnitCell
private boolean
isVibration
private boolean
isZapped
private static int
itemMax
private static int
MENUITEM_HEIGHT
private int
modelCount
protected int
modelIndex
protected java.util.Map<java.lang.String,java.lang.Object>
modelInfo
private java.lang.String
modelSetFileName
private java.util.Map<java.lang.String,java.lang.Object>
modelSetInfo
private java.lang.String
modelSetName
private java.lang.String
modelSetRoot
private javajs.util.Lst<SC>
NotPDB
private java.lang.String[]
noZapped
private java.lang.String
nullModelSetName
private javajs.util.Lst<SC>
PDBOnly
private javajs.util.Lst<SC>
SingleModelOnly
protected javajs.util.Lst<SC>
Special
private javajs.util.Lst<SC>
SymmetryOnly
private javajs.util.Lst<SC>
TemperatureOnly
private int
titleWidthMax
private javajs.util.Lst<SC>
UnitcellOnly
protected static int
UPDATE_ALL
protected static int
UPDATE_CONFIG
protected static int
UPDATE_NEVER
protected static int
UPDATE_SHOW
protected int
updateMode
private javajs.util.Lst<SC>
VibrationOnly
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Fields inherited from class org.jmol.popup.JmolGenericPopup
frankPopup, menuText, nFrankList, vwr
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Fields inherited from class org.jmol.popup.GenericPopup
allowSignedFeatures, buttonGroup, currentMenuItemId, helper, htCheckbox, htMenus, isApplet, isJS, isSigned, isTainted, isWebGL, menuName, popupMenu, strMenuStructure, thisPopup, thisx, thisy, updatingForShow
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Constructor Summary
Constructors Constructor Description JmolPopup()
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description protected void
appCheckItem(java.lang.String item, SC newMenu)
Opportunity to do something special with an item.void
appCheckSpecialMenu(java.lang.String item, SC subMenu, java.lang.String word)
Opportunity to do something special with a given submenu is createdprotected java.lang.String
appGetMenuAsString(java.lang.String title)
protected void
appRestorePopupMenu()
protected void
appUpdateForShow()
protected void
appUpdateSpecialCheckBoxValue(SC item, java.lang.String what, boolean TF)
(1) setOption --> set setOption true or set setOption falseprivate int
augmentGroup3List(SC menu, java.lang.String type, boolean addSeparator)
private boolean
checkBoolean(java.lang.String key)
protected PopupResource
getBundle(java.lang.String menu)
private java.lang.String
getMenuText(java.lang.String key)
protected java.lang.String
getScriptForCallback(SC source, java.lang.String id, java.lang.String script)
protected java.lang.String
getSpecialLabel(java.lang.String name, java.lang.String text)
menus or menu items with SPECIAL in their name are sent here for on-the-fly labelingprivate void
getViewerData()
private java.lang.String
gti(java.lang.String s, int n)
private java.lang.String
gto(java.lang.String s, java.lang.Object o)
void
jpiDispose()
void
jpiUpdateComputedMenus()
private void
setFrankMenu(java.lang.String id)
private boolean
setSecStrucMenu(SC menu, java.util.Map<java.lang.String,java.lang.Object> dssr)
private boolean
setSpectraMenu(SC menu, javajs.util.Lst<java.lang.String> peaks)
protected boolean
showFrankMenu()
protected void
updateAboutSubmenu()
protected void
updateConfigurationComputedMenu()
protected void
updateElementsComputedMenu(javajs.util.BS elementsPresentBitSet)
protected void
updateFileMenu()
protected void
updateFileTypeDependentMenus()
protected void
updateFRAMESbyModelComputedMenu()
private int
updateGroup3List(SC menu, java.lang.String name)
protected void
updateHeteroComputedMenu(java.util.Map<java.lang.String,java.lang.String> htHetero)
protected void
updateLanguageSubmenu()
protected void
updateMenus()
protected void
updateModelSetComputedMenu()
protected void
updatePDBResidueComputedMenus()
protected void
updateSceneComputedMenu()
protected void
updateSelectMenu()
protected void
updateSpecialMenuItem(SC m)
protected void
updateSpectraMenu()
protected void
updateSurfMoComputedMenu(java.util.Map<java.lang.String,java.lang.Object> moData)
protected void
updateSYMMETRYComputedMenus()
protected void
updateSYMMETRYSelectComputedMenu()
protected void
updateSYMMETRYShowComputedMenu()
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Methods inherited from class org.jmol.popup.JmolGenericPopup
appFixLabel, appGetBooleanProperty, appRunScript, appRunSpecialCheckBox, initialize, jpiGetMenuAsObject, jpiInitialize, jpiShow
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Methods inherited from class org.jmol.popup.GenericPopup
addMenu, addMenuItem, addMenuItems, convertToMegabytes, doMenuCheckBoxCallback, doMenuClickCallback, getEntryIcon, getImageIcon, getUnknownCheckBoxScriptToRun, initSwing, jpiGetMenuAsString, menuAddSeparator, menuAddSubMenu, menuCheckBoxCallback, menuClickCallback, menuCreateCheckboxItem, menuCreateItem, menuEnable, menuFocusCallback, menuGetId, menuGetListPosition, menuNewSubMenu, menuRemoveAll, menuSetAutoscrolls, menuSetLabel, menuShowPopup, setText, show, updateButton, updateSignedAppletItems
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Field Detail
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UPDATE_NEVER
protected static final int UPDATE_NEVER
- See Also:
- Constant Field Values
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UPDATE_ALL
protected static final int UPDATE_ALL
- See Also:
- Constant Field Values
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UPDATE_CONFIG
protected static final int UPDATE_CONFIG
- See Also:
- Constant Field Values
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UPDATE_SHOW
protected static final int UPDATE_SHOW
- See Also:
- Constant Field Values
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updateMode
protected int updateMode
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itemMax
private static final int itemMax
- See Also:
- Constant Field Values
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titleWidthMax
private int titleWidthMax
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nullModelSetName
private java.lang.String nullModelSetName
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modelSetName
private java.lang.String modelSetName
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modelSetFileName
private java.lang.String modelSetFileName
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modelSetRoot
private java.lang.String modelSetRoot
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currentFrankId
private java.lang.String currentFrankId
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configurationSelected
private java.lang.String configurationSelected
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altlocs
private java.lang.String altlocs
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frankList
private java.lang.Object[][] frankList
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modelSetInfo
private java.util.Map<java.lang.String,java.lang.Object> modelSetInfo
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modelInfo
protected java.util.Map<java.lang.String,java.lang.Object> modelInfo
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NotPDB
private javajs.util.Lst<SC> NotPDB
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PDBOnly
private javajs.util.Lst<SC> PDBOnly
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FileUnitOnly
private javajs.util.Lst<SC> FileUnitOnly
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FileMolOnly
private javajs.util.Lst<SC> FileMolOnly
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UnitcellOnly
private javajs.util.Lst<SC> UnitcellOnly
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SingleModelOnly
private javajs.util.Lst<SC> SingleModelOnly
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FramesOnly
private javajs.util.Lst<SC> FramesOnly
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VibrationOnly
private javajs.util.Lst<SC> VibrationOnly
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Special
protected javajs.util.Lst<SC> Special
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SymmetryOnly
private javajs.util.Lst<SC> SymmetryOnly
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ChargesOnly
private javajs.util.Lst<SC> ChargesOnly
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TemperatureOnly
private javajs.util.Lst<SC> TemperatureOnly
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fileHasUnitCell
private boolean fileHasUnitCell
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haveBFactors
private boolean haveBFactors
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haveCharges
private boolean haveCharges
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isLastFrame
private boolean isLastFrame
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isMultiConfiguration
private boolean isMultiConfiguration
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isMultiFrame
private boolean isMultiFrame
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isPDB
private boolean isPDB
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hasSymmetry
private boolean hasSymmetry
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isUnitCell
private boolean isUnitCell
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isVibration
private boolean isVibration
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isZapped
private boolean isZapped
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modelIndex
protected int modelIndex
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modelCount
private int modelCount
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ac
private int ac
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group3List
private java.lang.String group3List
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group3Counts
private int[] group3Counts
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cnmrPeaks
private javajs.util.Lst<java.lang.String> cnmrPeaks
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hnmrPeaks
private javajs.util.Lst<java.lang.String> hnmrPeaks
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MENUITEM_HEIGHT
private static final int MENUITEM_HEIGHT
- See Also:
- Constant Field Values
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noZapped
private final java.lang.String[] noZapped
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Method Detail
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jpiDispose
public void jpiDispose()
- Specified by:
jpiDispose
in interfaceGenericMenuInterface
- Overrides:
jpiDispose
in classJmolGenericPopup
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getBundle
protected PopupResource getBundle(java.lang.String menu)
- Specified by:
getBundle
in classJmolGenericPopup
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showFrankMenu
protected boolean showFrankMenu()
- Overrides:
showFrankMenu
in classJmolGenericPopup
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jpiUpdateComputedMenus
public void jpiUpdateComputedMenus()
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updateMenus
protected void updateMenus()
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appCheckItem
protected void appCheckItem(java.lang.String item, SC newMenu)
Description copied from class:GenericPopup
Opportunity to do something special with an item.- Overrides:
appCheckItem
in classGenericPopup
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appGetMenuAsString
protected java.lang.String appGetMenuAsString(java.lang.String title)
- Overrides:
appGetMenuAsString
in classGenericPopup
- Returns:
- null
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getScriptForCallback
protected java.lang.String getScriptForCallback(SC source, java.lang.String id, java.lang.String script)
- Specified by:
getScriptForCallback
in classGenericPopup
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appRestorePopupMenu
protected void appRestorePopupMenu()
- Overrides:
appRestorePopupMenu
in classJmolGenericPopup
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appUpdateSpecialCheckBoxValue
protected void appUpdateSpecialCheckBoxValue(SC item, java.lang.String what, boolean TF)
(1) setOption --> set setOption true or set setOption false- Specified by:
appUpdateSpecialCheckBoxValue
in classGenericPopup
- Parameters:
item
-what
- option to setTF
- true or false
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setFrankMenu
private void setFrankMenu(java.lang.String id)
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checkBoolean
private boolean checkBoolean(java.lang.String key)
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getViewerData
private void getViewerData()
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appCheckSpecialMenu
public void appCheckSpecialMenu(java.lang.String item, SC subMenu, java.lang.String word)
Description copied from class:GenericPopup
Opportunity to do something special with a given submenu is created- Overrides:
appCheckSpecialMenu
in classGenericPopup
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appUpdateForShow
protected void appUpdateForShow()
- Specified by:
appUpdateForShow
in classGenericPopup
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updateFileMenu
protected void updateFileMenu()
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getMenuText
private java.lang.String getMenuText(java.lang.String key)
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updateSelectMenu
protected void updateSelectMenu()
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updateElementsComputedMenu
protected void updateElementsComputedMenu(javajs.util.BS elementsPresentBitSet)
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updateSpectraMenu
protected void updateSpectraMenu()
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setSpectraMenu
private boolean setSpectraMenu(SC menu, javajs.util.Lst<java.lang.String> peaks)
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updateHeteroComputedMenu
protected void updateHeteroComputedMenu(java.util.Map<java.lang.String,java.lang.String> htHetero)
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updateSurfMoComputedMenu
protected void updateSurfMoComputedMenu(java.util.Map<java.lang.String,java.lang.Object> moData)
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updateFileTypeDependentMenus
protected void updateFileTypeDependentMenus()
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updateSceneComputedMenu
protected void updateSceneComputedMenu()
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updatePDBResidueComputedMenus
protected void updatePDBResidueComputedMenus()
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setSecStrucMenu
private boolean setSecStrucMenu(SC menu, java.util.Map<java.lang.String,java.lang.Object> dssr)
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updateGroup3List
private int updateGroup3List(SC menu, java.lang.String name)
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augmentGroup3List
private int augmentGroup3List(SC menu, java.lang.String type, boolean addSeparator)
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updateSYMMETRYComputedMenus
protected void updateSYMMETRYComputedMenus()
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updateSYMMETRYShowComputedMenu
protected void updateSYMMETRYShowComputedMenu()
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updateSYMMETRYSelectComputedMenu
protected void updateSYMMETRYSelectComputedMenu()
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updateFRAMESbyModelComputedMenu
protected void updateFRAMESbyModelComputedMenu()
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updateConfigurationComputedMenu
protected void updateConfigurationComputedMenu()
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updateModelSetComputedMenu
protected void updateModelSetComputedMenu()
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gti
private java.lang.String gti(java.lang.String s, int n)
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gto
private java.lang.String gto(java.lang.String s, java.lang.Object o)
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updateAboutSubmenu
protected void updateAboutSubmenu()
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updateLanguageSubmenu
protected void updateLanguageSubmenu()
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updateSpecialMenuItem
protected void updateSpecialMenuItem(SC m)
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getSpecialLabel
protected java.lang.String getSpecialLabel(java.lang.String name, java.lang.String text)
menus or menu items with SPECIAL in their name are sent here for on-the-fly labeling- Parameters:
name
-text
-- Returns:
- revised text
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