/****
DIAMOND protein aligner
Copyright (C) 2013-2018 Benjamin Buchfink <buchfink@gmail.com>

This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program.  If not, see <http://www.gnu.org/licenses/>.
****/

#ifndef SWIPE_MATRIX_H_
#define SWIPE_MATRIX_H_

#include <vector>
#include <string.h>
#include <stdlib.h>
#include <utility>
#include <algorithm>
#include "../score_vector.h"
#include "../../basic/packed_transcript.h"

using std::pair;


#endif