bmtk.simulator.pointnet package¶
Subpackages¶
Submodules¶
bmtk.simulator.pointnet.config module¶
-
class
bmtk.simulator.pointnet.config.
Config
(dict_obj)[source]¶ Bases:
bmtk.simulator.core.simulation_config.SimulationConfig
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property
io
¶
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property
bmtk.simulator.pointnet.gids module¶
bmtk.simulator.pointnet.glif_utils module¶
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bmtk.simulator.pointnet.glif_utils.
convert_aibs2nest
(model_template, dynamics_params)¶
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bmtk.simulator.pointnet.glif_utils.
lif_aibs_converter
(config, tau_syn=[5.5, 8.5, 2.8, 5.8])[source]¶ - Parameters
config –
- Returns
-
bmtk.simulator.pointnet.glif_utils.
lif_asc_aibs_converter
(config, tau_syn=[5.5, 8.5, 2.8, 5.8])[source]¶ - Parameters
config –
- Returns
-
bmtk.simulator.pointnet.glif_utils.
lif_asc_psc_aibs_converter
(config, syn_tau=[5.5, 8.5, 2.8, 5.8])[source]¶ Creates a nest glif_lif_asc_psc object
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bmtk.simulator.pointnet.glif_utils.
lif_psc_aibs_converter
(config, syn_tau=[5.5, 8.5, 2.8, 5.8])[source]¶ Creates a nest glif_lif_psc object
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bmtk.simulator.pointnet.glif_utils.
lif_r_aibs_converter
(config)[source]¶ - Parameters
config –
- Returns
-
bmtk.simulator.pointnet.glif_utils.
lif_r_asc_a_aibs_converter
(config)[source]¶ Creates a nest glif_lif_r_asc_a object
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bmtk.simulator.pointnet.glif_utils.
lif_r_asc_a_psc_aibs_converter
(config, syn_tau=[5.5, 8.5, 2.8, 5.8])[source]¶ Creates a nest glif_lif_r_asc_a_psc object
-
bmtk.simulator.pointnet.glif_utils.
lif_r_asc_aibs_converter
(config)[source]¶ Creates a nest glif_lif_r_asc object
bmtk.simulator.pointnet.io_tools module¶
Functions for logging, writing and reading from file.
bmtk.simulator.pointnet.pointnetwork module¶
bmtk.simulator.pointnet.pointsimulator module¶
bmtk.simulator.pointnet.property_map module¶
-
class
bmtk.simulator.pointnet.property_map.
EdgePropertyMap
(graph, source_population, target_population)[source]¶ Bases:
object
bmtk.simulator.pointnet.pyfunction_cache module¶
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bmtk.simulator.pointnet.pyfunction_cache.
add_cell_model
(func, directive, model_type, overwrite=True)[source]¶
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bmtk.simulator.pointnet.pyfunction_cache.
add_cell_processor
(func, name=None, overwrite=True)[source]¶
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bmtk.simulator.pointnet.pyfunction_cache.
add_synapse_model
(func, name=None, overwrite=True)[source]¶
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bmtk.simulator.pointnet.pyfunction_cache.
add_weight_function
(func, name=None, overwrite=True)[source]¶
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bmtk.simulator.pointnet.pyfunction_cache.
cell_model
(*wargs, **wkwargs)[source]¶ A decorator for registering NEURON cell loader functions.
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bmtk.simulator.pointnet.pyfunction_cache.
load_py_modules
(cell_models=None, syn_models=None, syn_weights=None)[source]¶
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bmtk.simulator.pointnet.pyfunction_cache.
synapse_model
(*wargs, **wkwargs)[source]¶ A decorator for registering NEURON synapse loader functions.
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bmtk.simulator.pointnet.pyfunction_cache.
synaptic_weight
(*wargs, **wkwargs)[source]¶ A decorator for registering a function as a synaptic weight function. To use either:
@synaptic_weight def weight_function(): ...
or:
@synaptic_weight(name='name_in_edge_types') def weight_function(): ...
Once the decorator has been attached and imported the functions will automatically be added to py_modules.
bmtk.simulator.pointnet.sonata_adaptors module¶
-
class
bmtk.simulator.pointnet.sonata_adaptors.
PointEdge
(sonata_edge, edge_adaptor)[source]¶ Bases:
bmtk.simulator.core.sonata_reader.edge_adaptor.SonataBaseEdge
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property
nest_params
¶
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property
source_node_ids
¶
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property
target_node_ids
¶
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property
-
class
bmtk.simulator.pointnet.sonata_adaptors.
PointEdgeAdaptor
(network)[source]¶ Bases:
bmtk.simulator.core.sonata_reader.edge_adaptor.EdgeAdaptor
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property
batch_process
¶
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property
-
class
bmtk.simulator.pointnet.sonata_adaptors.
PointEdgeBatched
(source_nids, target_nids, nest_params)[source]¶ Bases:
object
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property
nest_params
¶
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property
source_node_ids
¶
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property
target_node_ids
¶
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property
-
class
bmtk.simulator.pointnet.sonata_adaptors.
PointNode
(node, prop_adaptor)[source]¶ Bases:
bmtk.simulator.core.sonata_reader.node_adaptor.SonataBaseNode
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property
gids
¶
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property
n_nodes
¶
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property
nest_ids
¶
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property
nest_model
¶
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property
nest_params
¶
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property
node_ids
¶
-
property
-
class
bmtk.simulator.pointnet.sonata_adaptors.
PointNodeAdaptor
(network)[source]¶ Bases:
bmtk.simulator.core.sonata_reader.node_adaptor.NodeAdaptor
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property
batch_process
¶
-
property
-
class
bmtk.simulator.pointnet.sonata_adaptors.
PointNodeBatched
(node_ids, gids, node_types_table, node_type_id)[source]¶ Bases:
object
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property
gids
¶
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property
model_type
¶
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property
n_nodes
¶
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property
nest_ids
¶
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property
nest_model
¶
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property
nest_params
¶
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property
node_ids
¶
-
property
bmtk.simulator.pointnet.utils module¶
-
bmtk.simulator.pointnet.utils.
load_conns
(cnn_fn)[source]¶ load information regarding connectivity from csv files
- Parameters
- cnn_fn: json file name for connection information
- Returns
- connection dictionary
-
bmtk.simulator.pointnet.utils.
load_params
(node_name, model_name)[source]¶ load information regarding nodes and cell_models from csv files
- Parameters
- node_name: json file name for node information
- model_name: json file name for neuron model information
- Returns
- node_info: 2d array of node info read out from the json file
- mode_info: 2d array of model info read out from the json file
- dict_coordinates: dictionary of coordinates. keyword is the node_id and entries are the x,y and z coordinates.