Package org.forester.surfacing
Interface DomainSimilarityCalculator
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- All Known Implementing Classes:
BasicDomainSimilarityCalculator
public interface DomainSimilarityCalculator
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Nested Class Summary
Nested Classes Modifier and Type Interface Description static class
DomainSimilarityCalculator.Detailedness
static class
DomainSimilarityCalculator.GoAnnotationOutput
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description java.util.SortedSet<DomainSimilarity>
calculateSimilarities(PairwiseDomainSimilarityCalculator pairwise_calculator, java.util.List<GenomeWideCombinableDomains> cdc_list, boolean ignore_domains_without_combinations_in_any_genome, boolean ignore_domains_specific_to_one_genome)
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Method Detail
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calculateSimilarities
java.util.SortedSet<DomainSimilarity> calculateSimilarities(PairwiseDomainSimilarityCalculator pairwise_calculator, java.util.List<GenomeWideCombinableDomains> cdc_list, boolean ignore_domains_without_combinations_in_any_genome, boolean ignore_domains_specific_to_one_genome)
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