Class SmithWaterman3DParameters

    • Constructor Detail

      • SmithWaterman3DParameters

        public SmithWaterman3DParameters()
    • Method Detail

      • getUserConfigParameters

        public java.util.List<java.lang.String> getUserConfigParameters()
        Description copied from interface: ConfigStrucAligParams
        get the list of parameters that the user can change through the user interface. Parameter names are the same names as the corresponding Get/Set methods.
        Specified by:
        getUserConfigParameters in interface ConfigStrucAligParams
        Returns:
        list of parameters
      • getGapExtend

        public java.lang.Short getGapExtend()
      • setGapExtend

        public void setGapExtend​(java.lang.Short gapExtend)
      • getGapOpen

        public java.lang.Short getGapOpen()
      • setGapOpen

        public void setGapOpen​(java.lang.Short gapOpen)
      • getMaxRmsd

        public java.lang.Double getMaxRmsd()
      • setMaxRmsd

        public void setMaxRmsd​(java.lang.Double maxRmsd)
      • getMinLen

        public java.lang.Integer getMinLen()
      • setMinLen

        public void setMinLen​(java.lang.Integer minLen)