Class SequenceWriter


  • public class SequenceWriter
    extends java.lang.Object
    • Constructor Detail

      • SequenceWriter

        public SequenceWriter()
    • Method Detail

      • toFasta

        public static java.lang.StringBuilder toFasta​(MolecularSequence seq,
                                                      int width)
      • toFasta

        public static java.lang.StringBuilder toFasta​(java.lang.String name,
                                                      java.lang.String mol_seq,
                                                      int width)
      • toFasta

        public static void toFasta​(MolecularSequence seq,
                                   java.io.Writer w,
                                   int width)
                            throws java.io.IOException
        Throws:
        java.io.IOException
      • writeSeqs

        public static void writeSeqs​(java.util.List<MolecularSequence> seqs,
                                     java.io.Writer writer,
                                     SequenceWriter.SEQ_FORMAT format,
                                     int width)
                              throws java.io.IOException
        Throws:
        java.io.IOException