Class GuiWrapper
- java.lang.Object
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- org.biojava.nbio.structure.align.ce.GuiWrapper
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public class GuiWrapper extends java.lang.Object
A class to wrap some of the strucutre.gui classes using Reflection- Author:
- Andreas Prlic
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Constructor Summary
Constructors Constructor Description GuiWrapper()
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Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static java.lang.Object
display(AFPChain afpChain, Atom[] ca1, Atom[] ca2)
static Structure
getAlignedStructure(Atom[] ca1, Atom[] ca2)
static Atom[]
getAtomArray(Atom[] ca, java.util.List<Group> hetatoms, java.util.List<Group> nucs)
static javax.swing.JPanel
getScaleableMatrixPanel(Matrix m)
static boolean
isGuiModuleInstalled()
static void
showAlignmentGUI()
static void
showAlignmentImage(AFPChain afpChain, Atom[] ca1, Atom[] ca2, java.lang.Object jmol)
static void
showDBResults(StartupParameters params)
static void
showStructure(Structure structure)
Shows a structure in Jmol
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Method Detail
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isGuiModuleInstalled
public static boolean isGuiModuleInstalled()
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display
public static java.lang.Object display(AFPChain afpChain, Atom[] ca1, Atom[] ca2) throws java.lang.ClassNotFoundException, java.lang.NoSuchMethodException, java.lang.reflect.InvocationTargetException, java.lang.IllegalAccessException
- Throws:
java.lang.ClassNotFoundException
java.lang.NoSuchMethodException
java.lang.reflect.InvocationTargetException
java.lang.IllegalAccessException
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showAlignmentImage
public static void showAlignmentImage(AFPChain afpChain, Atom[] ca1, Atom[] ca2, java.lang.Object jmol) throws java.lang.ClassNotFoundException, java.lang.NoSuchMethodException, java.lang.reflect.InvocationTargetException, java.lang.IllegalAccessException
- Throws:
java.lang.ClassNotFoundException
java.lang.NoSuchMethodException
java.lang.reflect.InvocationTargetException
java.lang.IllegalAccessException
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showStructure
public static void showStructure(Structure structure) throws java.lang.ClassNotFoundException, java.lang.NoSuchMethodException, java.lang.reflect.InvocationTargetException, java.lang.IllegalAccessException, java.lang.InstantiationException
Shows a structure in Jmol- Throws:
java.lang.ClassNotFoundException
java.lang.NoSuchMethodException
java.lang.reflect.InvocationTargetException
java.lang.IllegalAccessException
java.lang.InstantiationException
- Since:
- 3.0.5
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showAlignmentGUI
public static void showAlignmentGUI() throws java.lang.ClassNotFoundException, java.lang.NoSuchMethodException, java.lang.reflect.InvocationTargetException, java.lang.IllegalAccessException
- Throws:
java.lang.ClassNotFoundException
java.lang.NoSuchMethodException
java.lang.reflect.InvocationTargetException
java.lang.IllegalAccessException
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getAlignedStructure
public static Structure getAlignedStructure(Atom[] ca1, Atom[] ca2) throws java.lang.ClassNotFoundException, java.lang.NoSuchMethodException, java.lang.reflect.InvocationTargetException, java.lang.IllegalAccessException
- Throws:
java.lang.ClassNotFoundException
java.lang.NoSuchMethodException
java.lang.reflect.InvocationTargetException
java.lang.IllegalAccessException
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getScaleableMatrixPanel
public static javax.swing.JPanel getScaleableMatrixPanel(Matrix m) throws java.lang.ClassNotFoundException, java.lang.NoSuchMethodException, java.lang.reflect.InvocationTargetException, java.lang.IllegalAccessException, java.lang.InstantiationException
- Throws:
java.lang.ClassNotFoundException
java.lang.NoSuchMethodException
java.lang.reflect.InvocationTargetException
java.lang.IllegalAccessException
java.lang.InstantiationException
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getAtomArray
public static Atom[] getAtomArray(Atom[] ca, java.util.List<Group> hetatoms, java.util.List<Group> nucs) throws java.lang.ClassNotFoundException, java.lang.NoSuchMethodException, java.lang.reflect.InvocationTargetException, java.lang.IllegalAccessException
- Throws:
java.lang.ClassNotFoundException
java.lang.NoSuchMethodException
java.lang.reflect.InvocationTargetException
java.lang.IllegalAccessException
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showDBResults
public static void showDBResults(StartupParameters params)
- Since:
- 3.0.5
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