java.util.Map<IProfeatProperties.GROUPING,java.lang.Double> |
IProfeatProperties.getComposition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute) |
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double |
IProfeatProperties.getComposition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.GROUPING group) |
Returns the composition of the specific grouping for the given attribute.
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static java.util.Map<IProfeatProperties.GROUPING,java.lang.Double> |
ProfeatProperties.getComposition(java.lang.String sequence,
IProfeatProperties.ATTRIBUTE attribute) |
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static double |
ProfeatProperties.getComposition(java.lang.String sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.GROUPING group) |
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static java.util.Map<IProfeatProperties.GROUPING,java.lang.Double> |
ProfeatProperties.getComposition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute) |
|
static double |
ProfeatProperties.getComposition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.GROUPING group) |
An adaptor method which returns the composition of the specific grouping for the given attribute.
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java.util.Map<IProfeatProperties.GROUPING,java.lang.Double> |
ProfeatPropertiesImpl.getComposition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute) |
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double |
ProfeatPropertiesImpl.getComposition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.GROUPING group) |
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java.util.Map<IProfeatProperties.GROUPING,java.util.Map<IProfeatProperties.DISTRIBUTION,java.lang.Double>> |
IProfeatProperties.getDistributionPosition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute) |
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java.util.Map<IProfeatProperties.DISTRIBUTION,java.lang.Double> |
IProfeatProperties.getDistributionPosition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.GROUPING group) |
|
double |
IProfeatProperties.getDistributionPosition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.GROUPING group,
IProfeatProperties.DISTRIBUTION distribution) |
Computes and return the position with respect to the sequence where the given distribution of the grouping can be found.
Example: "1111122222"
For the above example,
position of the GROUPING.GROUP1 && DISTRIBUTION.FIRST = 0/10 (because the first occurrence of '1' is at position 0)
position of the GROUPING.GROUP1 && DISTRIBUTION.ALL = 4/10 (because all occurrences of '1' happens on and before position 4)
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static java.util.Map<IProfeatProperties.GROUPING,java.util.Map<IProfeatProperties.DISTRIBUTION,java.lang.Double>> |
ProfeatProperties.getDistributionPosition(java.lang.String sequence,
IProfeatProperties.ATTRIBUTE attribute) |
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static java.util.Map<IProfeatProperties.DISTRIBUTION,java.lang.Double> |
ProfeatProperties.getDistributionPosition(java.lang.String sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.GROUPING group) |
|
static double |
ProfeatProperties.getDistributionPosition(java.lang.String sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.GROUPING group,
IProfeatProperties.DISTRIBUTION distribution) |
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static java.util.Map<IProfeatProperties.GROUPING,java.util.Map<IProfeatProperties.DISTRIBUTION,java.lang.Double>> |
ProfeatProperties.getDistributionPosition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute) |
|
static java.util.Map<IProfeatProperties.DISTRIBUTION,java.lang.Double> |
ProfeatProperties.getDistributionPosition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.GROUPING group) |
|
static double |
ProfeatProperties.getDistributionPosition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.GROUPING group,
IProfeatProperties.DISTRIBUTION distribution) |
An adaptor method which computes and return the position with respect to the sequence where the given distribution of the grouping can be found.
Example: "1111122222"
For the above example,
position of the GROUPING.GROUP1 && DISTRIBUTION.FIRST = 0/10 (because the first occurrence of '1' is at position 0)
position of the GROUPING.GROUP1 && DISTRIBUTION.ALL = 4/10 (because all occurrences of '1' happens on and before position 4)
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java.util.Map<IProfeatProperties.GROUPING,java.util.Map<IProfeatProperties.DISTRIBUTION,java.lang.Double>> |
ProfeatPropertiesImpl.getDistributionPosition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute) |
|
java.util.Map<IProfeatProperties.DISTRIBUTION,java.lang.Double> |
ProfeatPropertiesImpl.getDistributionPosition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.GROUPING group) |
|
double |
ProfeatPropertiesImpl.getDistributionPosition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.GROUPING group,
IProfeatProperties.DISTRIBUTION distribution) |
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java.util.Map<IProfeatProperties.TRANSITION,java.lang.Double> |
IProfeatProperties.getTransition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute) |
|
double |
IProfeatProperties.getTransition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.TRANSITION transition) |
Returns the number of transition between the specified groups for the given attribute with respect to the length of sequence.
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static java.util.Map<IProfeatProperties.TRANSITION,java.lang.Double> |
ProfeatProperties.getTransition(java.lang.String sequence,
IProfeatProperties.ATTRIBUTE attribute) |
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static double |
ProfeatProperties.getTransition(java.lang.String sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.TRANSITION transition) |
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static java.util.Map<IProfeatProperties.TRANSITION,java.lang.Double> |
ProfeatProperties.getTransition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute) |
|
static double |
ProfeatProperties.getTransition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.TRANSITION transition) |
An adaptor method which returns the number of transition between the specified groups for the given attribute with respect to the length of sequence.
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java.util.Map<IProfeatProperties.TRANSITION,java.lang.Double> |
ProfeatPropertiesImpl.getTransition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute) |
|
double |
ProfeatPropertiesImpl.getTransition(ProteinSequence sequence,
IProfeatProperties.ATTRIBUTE attribute,
IProfeatProperties.TRANSITION transition) |
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