Class ProteinChainExtractor
- java.lang.Object
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- org.biojava.nbio.structure.symmetry.core.ProteinChainExtractor
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public class ProteinChainExtractor extends java.lang.Object
Extracts information about all the chains in a structure, including chain Ids, sequences, and atoms. Includes both protein and nucleic acid chains.
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Constructor Summary
Constructors Constructor Description ProteinChainExtractor(Structure structure, QuatSymmetryParameters parameters)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description int
getAdjustedMinimumSequenceLength()
java.util.List<Atom[]>
getCalphaTraces()
java.util.List<java.lang.String>
getChainIds()
java.util.List<java.lang.Integer>
getModelNumbers()
int
getNucleicAcidChainCount()
java.util.List<java.lang.String>
getSequences()
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Constructor Detail
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ProteinChainExtractor
public ProteinChainExtractor(Structure structure, QuatSymmetryParameters parameters)
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Method Detail
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getCalphaTraces
public java.util.List<Atom[]> getCalphaTraces()
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getChainIds
public java.util.List<java.lang.String> getChainIds()
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getModelNumbers
public java.util.List<java.lang.Integer> getModelNumbers()
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getSequences
public java.util.List<java.lang.String> getSequences()
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getNucleicAcidChainCount
public int getNucleicAcidChainCount()
- Returns:
- the nucleicAcidChainCount
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getAdjustedMinimumSequenceLength
public int getAdjustedMinimumSequenceLength()
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