Class CytobandParser
- java.lang.Object
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- org.biojava.nbio.genome.parsers.cytoband.CytobandParser
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public class CytobandParser extends java.lang.Object
Parses the cytoband (karyotype) file from UCSC.
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Field Summary
Fields Modifier and Type Field Description static java.lang.String
DEFAULT_LOCATION
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Constructor Summary
Constructors Constructor Description CytobandParser()
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description java.util.SortedSet<Cytoband>
getAllCytobands(java.io.InputStream instream)
java.util.SortedSet<Cytoband>
getAllCytobands(java.net.URL u)
static void
main(java.lang.String[] args)
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Field Detail
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DEFAULT_LOCATION
public static final java.lang.String DEFAULT_LOCATION
- See Also:
- Constant Field Values
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Method Detail
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main
public static void main(java.lang.String[] args)
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getAllCytobands
public java.util.SortedSet<Cytoband> getAllCytobands(java.net.URL u) throws java.io.IOException
- Throws:
java.io.IOException
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getAllCytobands
public java.util.SortedSet<Cytoband> getAllCytobands(java.io.InputStream instream) throws java.io.IOException
- Throws:
java.io.IOException
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