Package org.forester.surfacing
Class DomainCountsDifferenceUtil
- java.lang.Object
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- org.forester.surfacing.DomainCountsDifferenceUtil
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public final class DomainCountsDifferenceUtil extends java.lang.Object
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Nested Class Summary
Nested Classes Modifier and Type Class Description static class
DomainCountsDifferenceUtil.COPY_CALCULATION_MODE
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Constructor Summary
Constructors Constructor Description DomainCountsDifferenceUtil()
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Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static void
calculateCopyNumberDifferences(java.util.List<GenomeWideCombinableDomains> genomes, java.util.SortedMap<Species,java.util.List<Protein>> protein_lists_per_species, java.util.List<java.lang.String> high_copy_base_species, java.util.List<java.lang.String> high_copy_target_species, java.util.List<java.lang.String> low_copy_species, int min_diff, java.lang.Double factor, java.io.File plain_output_dom, java.io.File html_output_dom, java.io.File html_output_dc, java.util.Map<java.lang.String,java.util.List<GoId>> domain_id_to_go_ids_map, java.util.Map<GoId,GoTerm> go_id_to_term_map, java.io.File all_domains_go_ids_out_dom, java.io.File passing_domains_go_ids_out_dom, java.io.File proteins_file_base)
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Method Detail
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calculateCopyNumberDifferences
public static void calculateCopyNumberDifferences(java.util.List<GenomeWideCombinableDomains> genomes, java.util.SortedMap<Species,java.util.List<Protein>> protein_lists_per_species, java.util.List<java.lang.String> high_copy_base_species, java.util.List<java.lang.String> high_copy_target_species, java.util.List<java.lang.String> low_copy_species, int min_diff, java.lang.Double factor, java.io.File plain_output_dom, java.io.File html_output_dom, java.io.File html_output_dc, java.util.Map<java.lang.String,java.util.List<GoId>> domain_id_to_go_ids_map, java.util.Map<GoId,GoTerm> go_id_to_term_map, java.io.File all_domains_go_ids_out_dom, java.io.File passing_domains_go_ids_out_dom, java.io.File proteins_file_base) throws java.io.IOException
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java.io.IOException
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