Class ClusterProteinChains
- java.lang.Object
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- org.biojava.nbio.structure.symmetry.core.ClusterProteinChains
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public class ClusterProteinChains extends java.lang.Object
Clusters the chains of one or two structures by sequence.
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Constructor Summary
Constructors Constructor Description ClusterProteinChains(Structure structure1, Structure structure2, QuatSymmetryParameters parameters)
ClusterProteinChains(Structure structure, QuatSymmetryParameters parameters)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description int
getNucleicAcidChainCount()
int
getProteinChainCount()
java.util.List<SequenceAlignmentCluster>
getSequenceAlignmentClusters(double sequenceIdentityThreshold)
Get a non-redundent set of clusters for a given sequence cutoff
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Constructor Detail
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ClusterProteinChains
public ClusterProteinChains(Structure structure, QuatSymmetryParameters parameters)
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ClusterProteinChains
public ClusterProteinChains(Structure structure1, Structure structure2, QuatSymmetryParameters parameters)
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Method Detail
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getSequenceAlignmentClusters
public java.util.List<SequenceAlignmentCluster> getSequenceAlignmentClusters(double sequenceIdentityThreshold)
Get a non-redundent set of clusters for a given sequence cutoff- Parameters:
sequenceIdentityThreshold
-- Returns:
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getProteinChainCount
public int getProteinChainCount()
- Returns:
- the proteinChainCount
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getNucleicAcidChainCount
public int getNucleicAcidChainCount()
- Returns:
- the nucleicAcidChainCount
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