Enum GapPenalty.Type

  • All Implemented Interfaces:
    java.io.Serializable, java.lang.Comparable<GapPenalty.Type>
    Enclosing interface:
    GapPenalty

    public static enum GapPenalty.Type
    extends java.lang.Enum<GapPenalty.Type>
    Defines the possible types of gap penalties. This is:
    • CONSTANT, if static and the extension penalty is 0
    • LINEAR, if static and the open penalty is 0
    • AFFINE, if static but neither CONSTANT nor LINEAR
    • DYNAMIC, if penalty values change during alignment
    • Method Summary

      All Methods Static Methods Concrete Methods 
      Modifier and Type Method Description
      static GapPenalty.Type valueOf​(java.lang.String name)
      Returns the enum constant of this type with the specified name.
      static GapPenalty.Type[] values()
      Returns an array containing the constants of this enum type, in the order they are declared.
      • Methods inherited from class java.lang.Enum

        clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf
      • Methods inherited from class java.lang.Object

        getClass, notify, notifyAll, wait, wait, wait
    • Method Detail

      • values

        public static GapPenalty.Type[] values()
        Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
        for (GapPenalty.Type c : GapPenalty.Type.values())
            System.out.println(c);
        
        Returns:
        an array containing the constants of this enum type, in the order they are declared
      • valueOf

        public static GapPenalty.Type valueOf​(java.lang.String name)
        Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
        Parameters:
        name - the name of the enum constant to be returned.
        Returns:
        the enum constant with the specified name
        Throws:
        java.lang.IllegalArgumentException - if this enum type has no constant with the specified name
        java.lang.NullPointerException - if the argument is null