Class GenericFastaHeaderFormat<S extends AbstractSequence<?>,​C extends Compound>

  • All Implemented Interfaces:
    FastaHeaderFormatInterface<S,​C>

    public class GenericFastaHeaderFormat<S extends AbstractSequence<?>,​C extends Compound>
    extends java.lang.Object
    implements FastaHeaderFormatInterface<S,​C>
    We store the original header if the sequence is parsed from a fasta file and will use that exact sequence if we write out the sequences to a fasta file. If we don't have an orginal header then use the accession id. This allows the implementation by the user to write out complex header with id notes etc without rewriting the fasta writer
    Author:
    Scooter Willis
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      java.lang.String getHeader​(S sequence)  
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait