Class UniprotToFasta


  • public class UniprotToFasta
    extends java.lang.Object
    Author:
    Scooter
    • Constructor Summary

      Constructors 
      Constructor Description
      UniprotToFasta()  
    • Method Summary

      All Methods Static Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      static void main​(java.lang.String[] args)  
      void process​(java.lang.String uniprotDatFileName, java.lang.String fastaFileName)
      Convert a Uniprot sequence file to a fasta file.
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • UniprotToFasta

        public UniprotToFasta()
    • Method Detail

      • main

        public static void main​(java.lang.String[] args)
      • process

        public void process​(java.lang.String uniprotDatFileName,
                            java.lang.String fastaFileName)
                     throws java.lang.Exception
        Convert a Uniprot sequence file to a fasta file. Allows you to download all sequence data for a species and convert to fasta to be used in a blast database
        Parameters:
        uniprotDatFileName -
        fastaFileName -
        Throws:
        java.lang.Exception