Interface GenomeWideCombinableDomains

    • Method Detail

      • contains

        boolean contains​(java.lang.String key_id)
      • getAllCombinableDomainsIds

        java.util.SortedMap<java.lang.String,​CombinableDomains> getAllCombinableDomainsIds()
      • getAllDomainIds

        java.util.SortedSet<java.lang.String> getAllDomainIds()
        This should return all domains ids present in the genome.
        Returns:
        a sorted set of domains ids
      • getPerGenomeDomainPromiscuityStatistics

        DescriptiveStatistics getPerGenomeDomainPromiscuityStatistics()
        This should return a statistic for per domain promiscuity in a genome.
        Returns:
        descriptive statistics for per domain promiscuity in a genome
      • getSize

        int getSize()
      • toBinaryDomainCombinations

        java.util.SortedSet<BinaryDomainCombination> toBinaryDomainCombinations()
        This should return all binary domain combinations present in the genome.
        Returns:
        a sorted set of binary domain combinations
      • getMostPromiscuosDomain

        java.util.SortedSet<java.lang.String> getMostPromiscuosDomain()