org.biojava.bio.structure.align.gui
Class AlignmentCalcDB
java.lang.Object
org.biojava.bio.structure.align.gui.AlignmentCalcDB
- All Implemented Interfaces:
- Runnable, AlignmentCalculationRunnable
public class AlignmentCalcDB
- extends Object
- implements AlignmentCalculationRunnable
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
logger
public static Logger logger
AlignmentCalcDB
public AlignmentCalcDB(AlignmentGui parent,
Structure s1,
String name1,
UserConfiguration config,
String outFile,
Boolean domainSplit)
getAlgorithm
public StructureAlignment getAlgorithm()
setAlgorithm
public void setAlgorithm(StructureAlignment algo)
run
public void run()
- Specified by:
run
in interface Runnable
interrupt
public void interrupt()
- stops what is currently happening and does not continue
- Specified by:
interrupt
in interface AlignmentCalculationRunnable
cleanup
public void cleanup()
- Specified by:
cleanup
in interface AlignmentCalculationRunnable
setNrCPUs
public void setNrCPUs(int useNrCPUs)
- Specified by:
setNrCPUs
in interface AlignmentCalculationRunnable
isInterrupted
public boolean isInterrupted()