org.biojava3.phylo
Class ScoreMatrix
java.lang.Object
org.biojava3.phylo.ScoreMatrix
public class ScoreMatrix
- extends Object
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
isDNA
public boolean isDNA()
isProtein
public boolean isProtein()
getMatrix
public int[][] getMatrix()
getPairwiseScore
public int getPairwiseScore(String A1,
String A2)
- Parameters:
A1
- A2
-
- Returns:
- score for substituting first char in A1 with first char in A2
getPairwiseScore
public int getPairwiseScore(char c,
char d)