org.biojava.bio.structure.align.ce
Class CeUserArgumentProcessor

java.lang.Object
  extended by org.biojava.bio.structure.align.ce.AbstractUserArgumentProcessor
      extended by org.biojava.bio.structure.align.ce.CeUserArgumentProcessor
All Implemented Interfaces:
UserArgumentProcessor
Direct Known Subclasses:
CeCPUserArgumentProcessor

public class CeUserArgumentProcessor
extends AbstractUserArgumentProcessor

process the arguments from command line

Author:
Andreas Prlic

Field Summary
 
Fields inherited from class org.biojava.bio.structure.align.ce.AbstractUserArgumentProcessor
mandatoryArgs, newline, params, PDB_DIR
 
Constructor Summary
CeUserArgumentProcessor()
           
 
Method Summary
 StructureAlignment getAlgorithm()
           
 String getDbSearchLegend()
           
 Object getParameters()
           
 
Methods inherited from class org.biojava.bio.structure.align.ce.AbstractUserArgumentProcessor
getDbSearchResult, getMandatoryArgs, process
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

CeUserArgumentProcessor

public CeUserArgumentProcessor()
Method Detail

getAlgorithm

public StructureAlignment getAlgorithm()
Specified by:
getAlgorithm in class AbstractUserArgumentProcessor

getParameters

public Object getParameters()
Specified by:
getParameters in class AbstractUserArgumentProcessor

getDbSearchLegend

public String getDbSearchLegend()
Specified by:
getDbSearchLegend in class AbstractUserArgumentProcessor