Package org.biojava.bio.structure.align.pairwise

Classes for the pairwise alignment of structures.

See:
          Description

Interface Summary
Alignable  
 

Class Summary
AlignmentProgressListener A class to listen to progress of the structure alignmnent calcualtions
AlignmentResult A class to track the alignment results in a flat file
AligNPE  
AltAligComparator a comparator to sort AlternativeAlignments based on their number of equivalent residues and RMSD.
AlternativeAlignment Implements a class which handles one possible (alternative) solution.
FragmentJoiner Joins the initial Fragments together to larger Fragments
FragmentPair a pair of fragments of two protein structures
Gotoh a class to perform Gotoh algorithm
StrCompAlignment  
 

Package org.biojava.bio.structure.align.pairwise Description

Classes for the pairwise alignment of structures.