org.biojava3.alignment.template
Class CallablePairwiseSequenceAligner<S extends Sequence<C>,C extends Compound>
java.lang.Object
org.biojava3.alignment.template.CallablePairwiseSequenceAligner<S,C>
- Type Parameters:
S
- each Sequence
of the alignment pair is of type SC
- each element of an AlignedSequence
is a Compound
of type C
- All Implemented Interfaces:
- Callable<SequencePair<S,C>>
public class CallablePairwiseSequenceAligner<S extends Sequence<C>,C extends Compound>
- extends Object
- implements Callable<SequencePair<S,C>>
Implements a concurrency wrapper for a PairwiseSequenceAligner
.
- Author:
- Mark Chapman
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
CallablePairwiseSequenceAligner
public CallablePairwiseSequenceAligner(PairwiseSequenceAligner<S,C> psa)
- Creates a pairwise sequence alignment task for simplified parallel execution.
- Parameters:
psa
- already initialized pairwise sequence aligner
call
public SequencePair<S,C> call()
- Specified by:
call
in interface Callable<SequencePair<S extends Sequence<C>,C extends Compound>>