org.biojava.bio.structure.align.fatcat.calc
Class FatCatAligner

java.lang.Object
  extended by org.biojava.bio.structure.align.fatcat.calc.FatCatAligner

public class FatCatAligner
extends Object

A class that does calculations on an AFPChain

Author:
Andreas Prlic

Field Summary
static boolean debug
           
static boolean printTimeStamps
           
 
Constructor Summary
FatCatAligner()
           
 
Method Summary
 void align(Atom[] ca1, Atom[] ca2, boolean doRigid, FatCatParameters params)
           
 AFPChain getAfpChain()
           
 Group[] getTwistedGroups()
           
 void setTwistedGroups(Group[] twistedGroups)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

debug

public static final boolean debug
See Also:
Constant Field Values

printTimeStamps

public static final boolean printTimeStamps
See Also:
Constant Field Values
Constructor Detail

FatCatAligner

public FatCatAligner()
Method Detail

getAfpChain

public AFPChain getAfpChain()

getTwistedGroups

public Group[] getTwistedGroups()

setTwistedGroups

public void setTwistedGroups(Group[] twistedGroups)

align

public void align(Atom[] ca1,
                  Atom[] ca2,
                  boolean doRigid,
                  FatCatParameters params)
           throws StructureException
Throws:
StructureException