org.biojava.bio.structure.align.client
Class FarmJobParameters
java.lang.Object
org.biojava.bio.structure.align.client.FarmJobParameters
public class FarmJobParameters
- extends Object
DEFAULT_JOB_TIME
public static final int DEFAULT_JOB_TIME
- See Also:
- Constant Field Values
DEFAULT_NR_ALIGNMENTS
public static final int DEFAULT_NR_ALIGNMENTS
- See Also:
- Constant Field Values
DEFAULT_NR_THREADS
public static final int DEFAULT_NR_THREADS
- See Also:
- Constant Field Values
DEFAULT_SERVER_URL
public static final String DEFAULT_SERVER_URL
DEFAULT_PDB_PATH
public static final String DEFAULT_PDB_PATH
- See Also:
- Constant Field Values
DEFAULT_DIR_SPLIT
public static final boolean DEFAULT_DIR_SPLIT
- See Also:
- Constant Field Values
DEFAULT_BATCH_SIZE
public static final int DEFAULT_BATCH_SIZE
- See Also:
- Constant Field Values
FarmJobParameters
public FarmJobParameters()
getPdbFilePath
public String getPdbFilePath()
setPdbFilePath
public void setPdbFilePath(String pdbFilePath)
toString
public String toString()
- Overrides:
toString
in class Object
getNrAlignments
public int getNrAlignments()
setNrAlignments
public void setNrAlignments(int nrAlignments)
getTime
public int getTime()
setTime
public void setTime(int time)
getThreads
public int getThreads()
setThreads
public void setThreads(int threads)
getServer
public String getServer()
setServer
public void setServer(String server)
isPdbDirSplit
public boolean isPdbDirSplit()
setPdbDirSplit
public void setPdbDirSplit(boolean pdbDirSplit)
getUsername
public String getUsername()
setUsername
public void setUsername(String username)
isRunBackground
public boolean isRunBackground()
- Flag if a job that only runs one parallell job should be run in its own thread or in the main thread.
For User interface related apps should be set to true. Default: false;
- Returns:
- flag
setRunBackground
public void setRunBackground(boolean runBackground)
getStepSize
public int getStepSize()
- how many pairs should be requested for alignment from server?
- Returns:
- stepsize
setStepSize
public void setStepSize(int stepSize)
isVerbose
public boolean isVerbose()
- Flag if the job should be run in verbose mode. Default: false
- Returns:
- flag if the job should be run in verbose mode
setVerbose
public void setVerbose(boolean verbose)