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Interface Summary | |
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DatabaseReferenceInterface | If a SequenceProxyReader implements this interface then that external source has a list of cross reference id(s) |
FeatureInterface<S extends AbstractSequence<C>,C extends Compound> | Interface class to handle describing arbitrary features. |
FeaturesKeyWordInterface | Models the keywords that are annotated for a protein sequence at Uniprot. |
Class Summary | |
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AbstractFeature<S extends AbstractSequence<C>,C extends Compound> | A feature is currently any descriptive item that can be associated with a sequence position(s) A feature has a type and a source which is currently a string to allow flexibility for the user Ideally well defined features should have a class to describe attributes of that feature |
DBReferenceInfo | If you have a uniprot ID then it is possible to get a collection of other id(s) that the protein is known by. |
QualityFeature<S extends AbstractSequence<C>,C extends Compound> | DNA Sequences produced by modern sequencers usually have quality informaion attached to them. |
QuantityFeature<S extends AbstractSequence<C>,C extends Compound> | It is common to have a numerical value or values associated with a feature. |
TextFeature<S extends AbstractSequence<C>,C extends Compound> | A implmentation of AbstractFeature |
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