org.biojava3.core.sequence.storage
Class SequenceAsStringHelper<C extends Compound>
java.lang.Object
org.biojava3.core.sequence.storage.SequenceAsStringHelper<C>
public class SequenceAsStringHelper<C extends Compound>
- extends Object
This is a common method that can be used across multiple storage/proxy implementations to
handle Negative strand and other interesting elements of sequence data.
- Author:
- Scooter Willis
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
SequenceAsStringHelper
public SequenceAsStringHelper()
getSequenceAsString
public String getSequenceAsString(List<C> parsedCompounds,
CompoundSet<C> compoundSet,
Integer bioBegin,
Integer bioEnd,
Strand strand)
- Parameters:
parsedCompounds
- compoundSet
- bioBegin
- bioEnd
- strand
-
- Returns: