org.forester.sdi
Class ORcount
java.lang.Object
org.forester.sdi.ORcount
public class ORcount
- extends Object
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
ORcount
public ORcount(Phylogeny[] trees)
- Default contructor which
countSharedAncestralClades
public void countSharedAncestralClades(Phylogeny tree,
int bootstrap_threshold,
String[] group_1,
String[] group_2)
countSharedAncestralClades
public void countSharedAncestralClades(Phylogeny[] trees,
int bootstrap_threshold)
countSuperOrthologousRelations
public void countSuperOrthologousRelations(int bootstrap_threshold)
reset
public void reset()
main
public static void main(String[] args)
- Main method for this class.
(Last modified: 11/26/03)
- Parameters:
args[1or2]
- gene tree file name (in NHX format with species names in
species name fields and sequence names in sequence name
fields; unless -n option is used)