org.biojava3.alignment.aaindex
Class DefaultAAIndexProvider

java.lang.Object
  extended by org.biojava3.alignment.aaindex.DefaultAAIndexProvider
All Implemented Interfaces:
AAIndexProvider

public class DefaultAAIndexProvider
extends Object
implements AAIndexProvider

The default provider for AAINDEX loads substituion matrices from the AAINDEX file in the resources directory

Author:
Andreas Prlic

Constructor Summary
DefaultAAIndexProvider()
           
 
Method Summary
 InputStream getInputStreamToAAindexFile()
           
 SubstitutionMatrix<AminoAcidCompound> getMatrix(String matrixName)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

DefaultAAIndexProvider

public DefaultAAIndexProvider()
Method Detail

getMatrix

public SubstitutionMatrix<AminoAcidCompound> getMatrix(String matrixName)
Specified by:
getMatrix in interface AAIndexProvider

getInputStreamToAAindexFile

public InputStream getInputStreamToAAindexFile()