org.forester.development
Class SimpleMutableMsa
java.lang.Object
org.forester.development.SimpleMutableMsa
- All Implemented Interfaces:
- Msa
public class SimpleMutableMsa
- extends Object
- implements Msa
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
SimpleMutableMsa
public SimpleMutableMsa(String[] names,
String[] seqs)
deleteResidueAt
public void deleteResidueAt(int col,
int row)
getGapScore
public double getGapScore()
getLength
public int getLength()
- Specified by:
getLength
in interface Msa
getNumberOfSequences
public int getNumberOfSequences()
- Specified by:
getNumberOfSequences
in interface Msa
getResidueAt
public char getResidueAt(int col,
int row)
- Specified by:
getResidueAt
in interface Msa
getScore
public double getScore()
getSequence
public Sequence getSequence(int i)
- Specified by:
getSequence
in interface Msa
insertResidueAt
public void insertResidueAt(int col,
int row)