org.forester.phylogeny.data
Class Confidence
java.lang.Object
org.forester.phylogeny.data.Confidence
- All Implemented Interfaces:
- Comparable<Confidence>, PhylogenyData
public class Confidence
- extends Object
- implements PhylogenyData, Comparable<Confidence>
CONFIDENCE_DEFAULT_VALUE
public static final double CONFIDENCE_DEFAULT_VALUE
- See Also:
- Constant Field Values
Confidence
public Confidence()
Confidence
public Confidence(double value,
String type)
asSimpleText
public StringBuffer asSimpleText()
- Specified by:
asSimpleText
in interface PhylogenyData
asText
public StringBuffer asText()
- Specified by:
asText
in interface PhylogenyData
compareTo
public int compareTo(Confidence confidence)
- Specified by:
compareTo
in interface Comparable<Confidence>
copy
public PhylogenyData copy()
- Description copied from interface:
PhylogenyData
- Creates a new PhylogenyData object with identical values as this
PhylogenyData.
This ~should~ return a deep copy, but not there yet.
- Specified by:
copy
in interface PhylogenyData
- Returns:
- a ~deep~ copy of this PhylogenyData
getType
public String getType()
getValue
public double getValue()
init
public void init()
isEqual
public boolean isEqual(PhylogenyData confidence)
- Description copied from interface:
PhylogenyData
- Compares this PhylogenyData to PhylogenyData data. In general, this
should return true if and only if all fiels are exactly identical.
- Specified by:
isEqual
in interface PhylogenyData
- Returns:
- in general, true if and only if all fiels are exactly identical,
false otherwise
setType
public void setType(String type)
setValue
public void setValue(double value)
toNHX
public StringBuffer toNHX()
- Specified by:
toNHX
in interface PhylogenyData
toPhyloXML
public void toPhyloXML(Writer writer,
int level,
String indentation)
throws IOException
- Description copied from interface:
PhylogenyData
- Writes a phyloXML representation of this phylogeny data.
- Specified by:
toPhyloXML
in interface PhylogenyData
- Throws:
IOException
toString
public String toString()
- Overrides:
toString
in class Object