org.biojava3.alignment.aaindex
Class AAIndexFileParser

java.lang.Object
  extended by org.biojava3.alignment.aaindex.AAIndexFileParser

public class AAIndexFileParser
extends Object


Constructor Summary
AAIndexFileParser()
           
 
Method Summary
 Map<String,SubstitutionMatrix<AminoAcidCompound>> getMatrices()
           
 void parse(InputStream inputStream)
          parse an inputStream that points to an AAINDEX database file
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

AAIndexFileParser

public AAIndexFileParser()
Method Detail

parse

public void parse(InputStream inputStream)
           throws IOException
parse an inputStream that points to an AAINDEX database file

Parameters:
inputStream -
Throws:
IOException

getMatrices

public Map<String,SubstitutionMatrix<AminoAcidCompound>> getMatrices()