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java.lang.Objectorg.biojava.bio.structure.align.seq.SmithWaterman3DParameters
public class SmithWaterman3DParameters
Constructor Summary | |
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SmithWaterman3DParameters()
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Method Summary | |
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Short |
getGapExtend()
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Short |
getGapOpen()
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List<String> |
getUserConfigHelp()
The help text for each of these parameters. |
List<String> |
getUserConfigParameterNames()
The labels to be displayed to the user for each parameter |
List<String> |
getUserConfigParameters()
get the list of parameters that the user can change through the user interface. |
List<Class> |
getUserConfigTypes()
Get the data types of the parameters |
void |
reset()
Set the parameters to the default. |
void |
setGapExtend(Short gapExtend)
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void |
setGapOpen(Short gapOpen)
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Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public SmithWaterman3DParameters()
Method Detail |
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public List<String> getUserConfigHelp()
ConfigStrucAligParams
getUserConfigHelp
in interface ConfigStrucAligParams
public List<String> getUserConfigParameterNames()
ConfigStrucAligParams
getUserConfigParameterNames
in interface ConfigStrucAligParams
public List<String> getUserConfigParameters()
ConfigStrucAligParams
getUserConfigParameters
in interface ConfigStrucAligParams
public List<Class> getUserConfigTypes()
ConfigStrucAligParams
getUserConfigTypes
in interface ConfigStrucAligParams
public void reset()
ConfigStrucAligParams
reset
in interface ConfigStrucAligParams
public Short getGapExtend()
public void setGapExtend(Short gapExtend)
public Short getGapOpen()
public void setGapOpen(Short gapOpen)
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