org.biojava3.phylo
Class Comparison

java.lang.Object
  extended by org.biojava3.phylo.Comparison

public class Comparison
extends Object

Author:
willishf

Constructor Summary
Comparison()
           
 
Method Summary
static boolean isGap(char c)
          DOCUMENT ME!
static float PID(String seq1, String seq2)
          this is a gapped PID calculation
static float PID(String seq1, String seq2, int start, int end)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

Comparison

public Comparison()
Method Detail

PID

public static final float PID(String seq1,
                              String seq2)
this is a gapped PID calculation

Parameters:
s1 - SequenceI
s2 - SequenceI
Returns:
float

PID

public static final float PID(String seq1,
                              String seq2,
                              int start,
                              int end)

isGap

public static final boolean isGap(char c)
DOCUMENT ME!

Parameters:
c - DOCUMENT ME!
Returns:
DOCUMENT ME!