Classes
Alignments
FractionalIdentityInProfileScorer
FractionalIdentityScorer
FractionalSimilarityInProfileScorer
FractionalSimilarityScorer
GuideTree
NeedlemanWunsch
SimpleAlignedSequence
SimpleGapPenalty
SimpleProfile
SimpleProfilePair
SimpleProfileProfileAligner
SimpleSequencePair
SimpleSubstitutionMatrix
SmithWaterman
StandardRescoreRefiner
SubstitutionMatrixHelper |