org.biojava3.core.sequence.template
Interface SequenceReader<C extends Compound>

All Superinterfaces:
Accessioned, Iterable<C>, Sequence<C>
All Known Subinterfaces:
ProxySequenceReader<C>
All Known Implementing Classes:
ArrayListProxySequenceReader, ArrayListSequenceReader, BitSequenceReader, FourBitSequenceReader, JoiningSequenceReader, RnaSequenceView, SequenceFileProxyLoader, SingleCompoundSequenceReader, StringProxySequenceReader, TwoBitSequenceReader, UniprotProxySequenceReader

public interface SequenceReader<C extends Compound>
extends Sequence<C>


Method Summary
 void setCompoundSet(CompoundSet<C> compoundSet)
           
 void setContents(String sequence)
           
 
Methods inherited from interface org.biojava3.core.sequence.template.Sequence
countCompounds, getAsList, getCompoundAt, getCompoundSet, getIndexOf, getInverse, getLastIndexOf, getLength, getSequenceAsString, getSubSequence
 
Methods inherited from interface java.lang.Iterable
iterator
 
Methods inherited from interface org.biojava3.core.sequence.template.Accessioned
getAccession
 

Method Detail

setCompoundSet

void setCompoundSet(CompoundSet<C> compoundSet)

setContents

void setContents(String sequence)