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Interface Summary | |
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Table | Provides a way of separating us from the specific IUPACTable even
though this is the only implementing class for the interface. |
Class Summary | |
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CaseInsensitiveCompound | Attempts to wrap compounds so it is possible to view them in a case insensitive manner |
DNAToRNATranslator | Performs the first stage of transcription by going from DNA to RNA. |
RNAToAminoAcidTranslator | Takes a Sequence of NucleotideCompound which should
represent an RNA sequence (RNASequence is good for this) and returns
a list of Sequence which hold AminoAcidCompound . |
Table.CaseInsensitiveTriplet | Class used to hold three nucleotides together and allow for equality to be assessed in a case insensitive manner. |
Table.Codon | Instance of a Codon which is 3 NucleotideCompound s, its
corresponding AminoAcidCompound and if it is a start or stop codon. |
TranscriptionEngine | Used as a way of encapsulating the data structures required to parse DNA to a Protein sequence. |
TranscriptionEngine.Builder | This class is the way to create a TranslationEngine . |
Enum Summary | |
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Frame | Indicates a way of translating a sequence. |
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