org.biojava3.phylo
Class Comparison
java.lang.Object
org.biojava3.phylo.Comparison
public class Comparison
- extends Object
- Author:
- willishf
Method Summary |
static boolean |
isGap(char c)
DOCUMENT ME! |
static float |
PID(String seq1,
String seq2)
this is a gapped PID calculation |
static float |
PID(String seq1,
String seq2,
int start,
int end)
|
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Comparison
public Comparison()
PID
public static final float PID(String seq1,
String seq2)
- this is a gapped PID calculation
- Parameters:
s1
- SequenceIs2
- SequenceI
- Returns:
- float
PID
public static final float PID(String seq1,
String seq2,
int start,
int end)
isGap
public static final boolean isGap(char c)
- DOCUMENT ME!
- Parameters:
c
- DOCUMENT ME!
- Returns:
- DOCUMENT ME!