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public interface ScoringMethodForExternalNode
Method Summary | |
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void |
calculateScoreForExternalNode(SortedMap<PhylogenyNode,Double> external_node_scores,
Phylogeny phylogeny,
PhylogenyNode external_node,
CoverageCalculationOptions options)
This calculates the coverage score for one external node. |
String |
getDesciption()
This returns a short description of this scoring method |
double |
getNormalizationFactor(Phylogeny phylogeny)
This calculates a normalization factor, so that a normalized score of 1.0 means complete coverage. |
Method Detail |
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void calculateScoreForExternalNode(SortedMap<PhylogenyNode,Double> external_node_scores, Phylogeny phylogeny, PhylogenyNode external_node, CoverageCalculationOptions options)
external_node_scores
- SortedMapphylogeny
- Phylogeny containing the external nodes to scoreexternal_node
- PhylogenyNod for which to calculate the scoreoptions
- CoverageCalculationOptionsannotate_phylogeny
- String getDesciption()
double getNormalizationFactor(Phylogeny phylogeny)
phylogeny
- Phylogeny containing the external nodes to score
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