org.forester.development
Class SupportCount
java.lang.Object
org.forester.development.SupportCount
public final class SupportCount
- extends Object
Method Summary |
static double |
compare(Phylogeny phylogeny,
Phylogeny evaluator_phylogeny,
boolean strip_evaluator_phylogeny,
boolean update_support_in_phylogeny,
boolean re_root)
|
static void |
count(Phylogeny phylogeny,
Phylogeny[] evaluator_phylogenies,
boolean strip_evaluator_phylogenies,
boolean verbose)
|
static List<Phylogeny> |
count(Phylogeny phylogeny,
Phylogeny[] evaluator_phylogenies,
boolean strip_evaluator_phylogenies,
double similarity_threshold,
boolean verbose)
This counts the support of topology phylogeny by the topologies in
phylogenies. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
compare
public static double compare(Phylogeny phylogeny,
Phylogeny evaluator_phylogeny,
boolean strip_evaluator_phylogeny,
boolean update_support_in_phylogeny,
boolean re_root)
count
public static void count(Phylogeny phylogeny,
Phylogeny[] evaluator_phylogenies,
boolean strip_evaluator_phylogenies,
boolean verbose)
count
public static List<Phylogeny> count(Phylogeny phylogeny,
Phylogeny[] evaluator_phylogenies,
boolean strip_evaluator_phylogenies,
double similarity_threshold,
boolean verbose)
- This counts the support of topology phylogeny by the topologies in
phylogenies. If phylogenies contains topogies with names not present in
phylogeny, strip_phylogenies must be set to true. phylogeny must not
contain names not found in all phylogenies.
- Parameters:
phylogeny
- the topology to be evaluatedevaluator_phylogenies
- the topologies used for evaluationstrip_evaluator_phylogenies
- set to true if phylogenies contains topologies with names not
present in phylogeny