org.biojava3.alignment.template
Enum GapPenalty.Type

java.lang.Object
  extended by java.lang.Enum<GapPenalty.Type>
      extended by org.biojava3.alignment.template.GapPenalty.Type
All Implemented Interfaces:
Serializable, Comparable<GapPenalty.Type>
Enclosing interface:
GapPenalty

public static enum GapPenalty.Type
extends Enum<GapPenalty.Type>

Defines the possible types of gap penalties. This is:


Enum Constant Summary
AFFINE
           
CONSTANT
           
DYNAMIC
           
LINEAR
           
 
Method Summary
static GapPenalty.Type valueOf(String name)
          Returns the enum constant of this type with the specified name.
static GapPenalty.Type[] values()
          Returns an array containing the constants of this enum type, in the order they are declared.
 
Methods inherited from class java.lang.Enum
clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf
 
Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait
 

Enum Constant Detail

CONSTANT

public static final GapPenalty.Type CONSTANT

LINEAR

public static final GapPenalty.Type LINEAR

AFFINE

public static final GapPenalty.Type AFFINE

DYNAMIC

public static final GapPenalty.Type DYNAMIC
Method Detail

values

public static GapPenalty.Type[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
for (GapPenalty.Type c : GapPenalty.Type.values())
    System.out.println(c);

Returns:
an array containing the constants of this enum type, in the order they are declared

valueOf

public static GapPenalty.Type valueOf(String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:
name - the name of the enum constant to be returned.
Returns:
the enum constant with the specified name
Throws:
IllegalArgumentException - if this enum type has no constant with the specified name
NullPointerException - if the argument is null