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S
- each element of the alignment Profile
is of type SC
- each element of an AlignedSequence
is a Compound
of type Cpublic interface PartitionRefiner<S extends Sequence<C>,C extends Compound>
Defines an algorithm which computes a new alignment Profile
by splitting a current alignment and realigning.
Method Summary | |
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Alignments.ProfileProfileAlignerType |
getProfileProfileAligner()
Returns class type of profile-profile alignment subroutine. |
Methods inherited from interface org.biojava3.alignment.template.Aligner |
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getComputationTime, getProfile |
Methods inherited from interface org.biojava3.alignment.template.ProfileProfileScorer |
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getQuery, getTarget |
Methods inherited from interface org.biojava3.alignment.template.Scorer |
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getDistance, getDistance, getMaxScore, getMinScore, getScore, getSimilarity, getSimilarity |
Method Detail |
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Alignments.ProfileProfileAlignerType getProfileProfileAligner()
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