org.forester.development
Class AminoAcid

java.lang.Object
  extended by org.forester.development.AminoAcid

public final class AminoAcid
extends Object


Field Summary
static char GAP
           
static byte GAP_CODE
           
static char TERMINATE
           
static byte TERMINATE_CODE
           
static char UNKNOWN
           
static byte UNKNOWN_CODE
           
 
Method Summary
static char getResidue(byte state)
           
static byte getState(char c)
           
static boolean isGap(byte state)
           
static boolean isTerminate(byte state)
           
static boolean isUnassignable(byte state)
           
static boolean isUnknown(byte state)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

UNKNOWN

public static final char UNKNOWN
See Also:
Constant Field Values

UNKNOWN_CODE

public static final byte UNKNOWN_CODE
See Also:
Constant Field Values

GAP

public static final char GAP
See Also:
Constant Field Values

GAP_CODE

public static final byte GAP_CODE
See Also:
Constant Field Values

TERMINATE

public static final char TERMINATE
See Also:
Constant Field Values

TERMINATE_CODE

public static final byte TERMINATE_CODE
See Also:
Constant Field Values
Method Detail

getResidue

public static char getResidue(byte state)

getState

public static byte getState(char c)

isGap

public static boolean isGap(byte state)

isTerminate

public static boolean isTerminate(byte state)

isUnassignable

public static boolean isUnassignable(byte state)

isUnknown

public static boolean isUnknown(byte state)