org.biojava.bio.structure.align.pairwise
Class FragmentPair
java.lang.Object
org.biojava.bio.structure.align.pairwise.FragmentPair
public class FragmentPair
- extends Object
a pair of fragments of two protein structures
- Since:
- 1.5
- Version:
- %I% %G%
- Author:
- Andreas Prlic
Constructor Summary |
FragmentPair(int length,
int p1,
int p2)
|
FragmentPair
public FragmentPair(int length,
int p1,
int p2)
clone
public Object clone()
- Overrides:
clone
in class Object
getCluster
public int getCluster()
setCluster
public void setCluster(int cluster)
getContacts
public int getContacts()
setContacts
public void setContacts(int contacts)
getCovered
public int getCovered()
setCovered
public void setCovered(int covered)
getLength
public int getLength()
setLength
public void setLength(int length)
getPos1
public int getPos1()
setPos1
public void setPos1(int pos1)
getPos2
public int getPos2()
setPos2
public void setPos2(int pos2)
getRms
public double getRms()
setRms
public void setRms(double rms)
getRot
public Matrix getRot()
setRot
public void setRot(Matrix rot)
getTrans
public Atom getTrans()
setTrans
public void setTrans(Atom trans)
getUnitv
public Atom getUnitv()
setUnitv
public void setUnitv(Atom unitv)
getUsed
public int getUsed()
setUsed
public void setUsed(int used)
getCenter1
public Atom getCenter1()
setCenter1
public void setCenter1(Atom center1)
getCenter2
public Atom getCenter2()
setCenter2
public void setCenter2(Atom center2)
toString
public String toString()
- Overrides:
toString
in class Object