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See:
Description
Interface Summary | |
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StructureAlignment |
Class Summary | |
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AbstractStructureAlignment | |
AFPTwister | |
BioJavaStructureAlignment | Wrapper for the BioJava Structure Alignment Implementation |
CallableStructureAlignment | |
ClusterAltAligs | A class that clusters alternative alignments according to their similarity. |
FarmJob | A job as it can be run on the farm. |
StrucAligParameters | A class that contains all the parameters of the structure alignment algorithm. |
StructureAlignmentFactory | |
StructurePairAligner | Perform a pairwise protein structure superimposition. |
Classes for the alignment of structures. This is the unpublished legacy implementation from the time, before BioJava supported CE and FATCAT alignments. See the StructurePairAligner for an example.
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