org.biojava3.ws.alignment.qblast
Enum BlastMatrixEnum

java.lang.Object
  extended by java.lang.Enum<BlastMatrixEnum>
      extended by org.biojava3.ws.alignment.qblast.BlastMatrixEnum
All Implemented Interfaces:
Serializable, Comparable<BlastMatrixEnum>

public enum BlastMatrixEnum
extends Enum<BlastMatrixEnum>

Enum representing matrices supported by QBlast

Author:
Gediminas Rimsa

Enum Constant Summary
BLOSUM45
           
BLOSUM50
           
BLOSUM62
           
BLOSUM80
           
BLOSUM90
           
PAM250
           
PAM30
           
PAM70
           
 
Method Summary
static BlastMatrixEnum valueOf(String name)
          Returns the enum constant of this type with the specified name.
static BlastMatrixEnum[] values()
          Returns an array containing the constants of this enum type, in the order they are declared.
 
Methods inherited from class java.lang.Enum
clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf
 
Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait
 

Enum Constant Detail

BLOSUM45

public static final BlastMatrixEnum BLOSUM45

BLOSUM50

public static final BlastMatrixEnum BLOSUM50

BLOSUM62

public static final BlastMatrixEnum BLOSUM62

BLOSUM80

public static final BlastMatrixEnum BLOSUM80

BLOSUM90

public static final BlastMatrixEnum BLOSUM90

PAM250

public static final BlastMatrixEnum PAM250

PAM30

public static final BlastMatrixEnum PAM30

PAM70

public static final BlastMatrixEnum PAM70
Method Detail

values

public static BlastMatrixEnum[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
for (BlastMatrixEnum c : BlastMatrixEnum.values())
    System.out.println(c);

Returns:
an array containing the constants of this enum type, in the order they are declared

valueOf

public static BlastMatrixEnum valueOf(String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:
name - the name of the enum constant to be returned.
Returns:
the enum constant with the specified name
Throws:
IllegalArgumentException - if this enum type has no constant with the specified name
NullPointerException - if the argument is null