org.forester.phylogenyinference
Class DolloParsimony
java.lang.Object
org.forester.phylogenyinference.DolloParsimony
public class DolloParsimony
- extends Object
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
execute
public void execute(Phylogeny p,
CharacterStateMatrix<CharacterStateMatrix.BinaryStates> external_node_states_matrix)
getCost
public int getCost()
getGainLossMatrix
public CharacterStateMatrix<CharacterStateMatrix.GainLossStates> getGainLossMatrix()
getInternalStatesMatrix
public CharacterStateMatrix<CharacterStateMatrix.BinaryStates> getInternalStatesMatrix()
getTotalGains
public int getTotalGains()
getTotalLosses
public int getTotalLosses()
getTotalUnchanged
public int getTotalUnchanged()
setReturnGainLossMatrix
public void setReturnGainLossMatrix(boolean return_gain_loss)
setReturnInternalStates
public void setReturnInternalStates(boolean return_internal_states)
createInstance
public static DolloParsimony createInstance()