org.biojava.bio.structure.scop
Class BerkeleyScopInstallation

java.lang.Object
  extended by org.biojava.bio.structure.scop.ScopInstallation
      extended by org.biojava.bio.structure.scop.BerkeleyScopInstallation
All Implemented Interfaces:
ScopDatabase

public class BerkeleyScopInstallation
extends ScopInstallation
implements ScopDatabase


Field Summary
static String claFileName
           
static String desFileName
           
static String hieFileName
           
 
Fields inherited from class org.biojava.bio.structure.scop.ScopInstallation
DEFAULT_VERSION, FILESPLIT, NEWLINE, SCOP_DOWNLOAD, scopDownloadURL, scopVersion
 
Constructor Summary
BerkeleyScopInstallation()
           
 
Method Summary
protected  void downloadClaFile()
           
protected  void downloadDesFile()
           
protected  void downloadHieFile()
           
 
Methods inherited from class org.biojava.bio.structure.scop.ScopInstallation
downloadFileFromRemote, ensureClaInstalled, ensureDesInstalled, ensureHieInstalled, filterByClassificationId, filterByDescription, filterByDomainName, getByCategory, getCacheLocation, getClaFilename, getDesFilename, getDomainByScopID, getDomainsForPDB, getHieFilename, getScopDescriptionBySunid, getScopDomainsBySunid, getScopDownloadURL, getScopNode, getScopVersion, getTree, setCacheLocation, setScopDownloadURL, setScopVersion
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 
Methods inherited from interface org.biojava.bio.structure.scop.ScopDatabase
filterByClassificationId, filterByDescription, filterByDomainName, getByCategory, getDomainByScopID, getDomainsForPDB, getScopDescriptionBySunid, getScopDomainsBySunid, getScopNode, getScopVersion, getTree
 

Field Detail

claFileName

public static final String claFileName
See Also:
Constant Field Values

desFileName

public static final String desFileName
See Also:
Constant Field Values

hieFileName

public static final String hieFileName
See Also:
Constant Field Values
Constructor Detail

BerkeleyScopInstallation

public BerkeleyScopInstallation()
Method Detail

downloadClaFile

protected void downloadClaFile()
                        throws FileNotFoundException,
                               IOException
Overrides:
downloadClaFile in class ScopInstallation
Throws:
FileNotFoundException
IOException

downloadDesFile

protected void downloadDesFile()
                        throws FileNotFoundException,
                               IOException
Overrides:
downloadDesFile in class ScopInstallation
Throws:
FileNotFoundException
IOException

downloadHieFile

protected void downloadHieFile()
                        throws FileNotFoundException,
                               IOException
Overrides:
downloadHieFile in class ScopInstallation
Throws:
FileNotFoundException
IOException