org.forester.io.parsers.nexus
Class NexusPhylogeniesParser

java.lang.Object
  extended by org.forester.io.parsers.nexus.NexusPhylogeniesParser
All Implemented Interfaces:
PhylogenyParser

public class NexusPhylogeniesParser
extends Object
implements PhylogenyParser


Constructor Summary
NexusPhylogeniesParser()
           
 
Method Summary
 Phylogeny[] parse()
           
 void setIgnoreQuotes(boolean ignore_quotes_in_nh_data)
           
 void setReplaceUnderscores(boolean replace_underscores)
           
 void setSource(Object nexus_source)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

NexusPhylogeniesParser

public NexusPhylogeniesParser()
Method Detail

parse

public Phylogeny[] parse()
                  throws IOException,
                         NHXFormatException
Specified by:
parse in interface PhylogenyParser
Throws:
IOException
NHXFormatException

setIgnoreQuotes

public void setIgnoreQuotes(boolean ignore_quotes_in_nh_data)

setReplaceUnderscores

public void setReplaceUnderscores(boolean replace_underscores)

setSource

public void setSource(Object nexus_source)
               throws PhylogenyParserException,
                      IOException
Specified by:
setSource in interface PhylogenyParser
Throws:
PhylogenyParserException
IOException