org.biojava.bio.structure.align.ce
Class CeSideChainMain

java.lang.Object
  extended by org.biojava.bio.structure.align.AbstractStructureAlignment
      extended by org.biojava.bio.structure.align.ce.CeMain
          extended by org.biojava.bio.structure.align.ce.CeSideChainMain
All Implemented Interfaces:
StructureAlignment

public class CeSideChainMain
extends CeMain
implements StructureAlignment


Field Summary
static String algorithmName
           
 
Fields inherited from class org.biojava.bio.structure.align.ce.CeMain
calculator, params
 
Fields inherited from class org.biojava.bio.structure.align.AbstractStructureAlignment
newline
 
Constructor Summary
CeSideChainMain()
           
 
Method Summary
 String getAlgorithmName()
          Get the name of the Algorithm
 ConfigStrucAligParams getParameters()
          Return the paramers for this algorithm.
 String getVersion()
          Get the Version information for this Algorithm.
static void main(String[] args)
           
 void setParameters(ConfigStrucAligParams params)
          Set the default parameters for this algorithm to use
 
Methods inherited from class org.biojava.bio.structure.align.ce.CeMain
align, align, getCECalculator
 
Methods inherited from class org.biojava.bio.structure.align.AbstractStructureAlignment
printHelp
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 
Methods inherited from interface org.biojava.bio.structure.align.StructureAlignment
align, align, printHelp
 

Field Detail

algorithmName

public static final String algorithmName
See Also:
Constant Field Values
Constructor Detail

CeSideChainMain

public CeSideChainMain()
Method Detail

main

public static void main(String[] args)

getAlgorithmName

public String getAlgorithmName()
Description copied from interface: StructureAlignment
Get the name of the Algorithm

Specified by:
getAlgorithmName in interface StructureAlignment
Overrides:
getAlgorithmName in class CeMain
Returns:
the name of the algorithm

getParameters

public ConfigStrucAligParams getParameters()
Description copied from interface: StructureAlignment
Return the paramers for this algorithm.

Specified by:
getParameters in interface StructureAlignment
Overrides:
getParameters in class CeMain
Returns:
The returned object will be a Java bean.

setParameters

public void setParameters(ConfigStrucAligParams params)
Description copied from interface: StructureAlignment
Set the default parameters for this algorithm to use

Specified by:
setParameters in interface StructureAlignment
Overrides:
setParameters in class CeMain

getVersion

public String getVersion()
Description copied from interface: StructureAlignment
Get the Version information for this Algorithm.

Specified by:
getVersion in interface StructureAlignment
Overrides:
getVersion in class CeMain
Returns:
the version of the algorithm