org.biojava3.genome.homology
Class GFF3FromUniprotBlastHits
java.lang.Object
org.biojava3.genome.homology.GFF3FromUniprotBlastHits
public class GFF3FromUniprotBlastHits
- extends Object
- Author:
- Scooter Willis , Mark Chapman
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
GFF3FromUniprotBlastHits
public GFF3FromUniprotBlastHits()
process
public void process(File xmlBlastHits,
double ecutoff,
LinkedHashMap<String,GeneSequence> geneSequenceHashMap,
OutputStream gff3Output)
throws Exception
- Throws:
Exception
process
public void process(LinkedHashMap<String,ArrayList<String>> hits,
LinkedHashMap<String,GeneSequence> geneSequenceHashMap,
OutputStream gff3Output)
throws Exception
- Throws:
Exception
main
public static void main(String[] args)