Package org.biojava3.core.sequence.transcription

Interface Summary
Table Provides a way of separating us from the specific IUPACTable even though this is the only implementing class for the interface.
 

Class Summary
CaseInsensitiveCompound Attempts to wrap compounds so it is possible to view them in a case insensitive manner
DNAToRNATranslator Performs the first stage of transcription by going from DNA to RNA.
RNAToAminoAcidTranslator Takes a Sequence of NucleotideCompound which should represent an RNA sequence (RNASequence is good for this) and returns a list of Sequence which hold AminoAcidCompound.
Table.CaseInsensitiveTriplet Class used to hold three nucleotides together and allow for equality to be assessed in a case insensitive manner.
Table.Codon Instance of a Codon which is 3 NucleotideCompounds, its corresponding AminoAcidCompound and if it is a start or stop codon.
TranscriptionEngine Used as a way of encapsulating the data structures required to parse DNA to a Protein sequence.
TranscriptionEngine.Builder This class is the way to create a TranslationEngine.
 

Enum Summary
Frame Indicates a way of translating a sequence.