org.biojava3.alignment
Enum Alignments.PairwiseSequenceScorerType

java.lang.Object
  extended by java.lang.Enum<Alignments.PairwiseSequenceScorerType>
      extended by org.biojava3.alignment.Alignments.PairwiseSequenceScorerType
All Implemented Interfaces:
Serializable, Comparable<Alignments.PairwiseSequenceScorerType>
Enclosing class:
Alignments

public static enum Alignments.PairwiseSequenceScorerType
extends Enum<Alignments.PairwiseSequenceScorerType>

List of implemented pairwise sequence scoring routines.


Enum Constant Summary
GLOBAL
           
GLOBAL_IDENTITIES
           
GLOBAL_SIMILARITIES
           
KMERS
           
LOCAL
           
LOCAL_IDENTITIES
           
LOCAL_SIMILARITIES
           
WU_MANBER
           
 
Method Summary
static Alignments.PairwiseSequenceScorerType valueOf(String name)
          Returns the enum constant of this type with the specified name.
static Alignments.PairwiseSequenceScorerType[] values()
          Returns an array containing the constants of this enum type, in the order they are declared.
 
Methods inherited from class java.lang.Enum
clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf
 
Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait
 

Enum Constant Detail

GLOBAL

public static final Alignments.PairwiseSequenceScorerType GLOBAL

GLOBAL_IDENTITIES

public static final Alignments.PairwiseSequenceScorerType GLOBAL_IDENTITIES

GLOBAL_SIMILARITIES

public static final Alignments.PairwiseSequenceScorerType GLOBAL_SIMILARITIES

LOCAL

public static final Alignments.PairwiseSequenceScorerType LOCAL

LOCAL_IDENTITIES

public static final Alignments.PairwiseSequenceScorerType LOCAL_IDENTITIES

LOCAL_SIMILARITIES

public static final Alignments.PairwiseSequenceScorerType LOCAL_SIMILARITIES

KMERS

public static final Alignments.PairwiseSequenceScorerType KMERS

WU_MANBER

public static final Alignments.PairwiseSequenceScorerType WU_MANBER
Method Detail

values

public static Alignments.PairwiseSequenceScorerType[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
for (Alignments.PairwiseSequenceScorerType c : Alignments.PairwiseSequenceScorerType.values())
    System.out.println(c);

Returns:
an array containing the constants of this enum type, in the order they are declared

valueOf

public static Alignments.PairwiseSequenceScorerType valueOf(String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:
name - the name of the enum constant to be returned.
Returns:
the enum constant with the specified name
Throws:
IllegalArgumentException - if this enum type has no constant with the specified name
NullPointerException - if the argument is null