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S
- each element of an alignment Profile
is of type SC
- each element of an AlignedSequence
is a Compound
of type Cpublic interface ProfilePair<S extends Sequence<C>,C extends Compound>
Defines a data structure for the results of the alignment of a pair of Profile
s.
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biojava3.alignment.template.Profile |
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Profile.StringFormat |
Method Summary | |
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Profile<S,C> |
getQuery()
Returns the first Profile of the pair. |
Profile<S,C> |
getTarget()
Returns the second Profile of the pair. |
Methods inherited from interface org.biojava3.alignment.template.Profile |
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getAlignedSequence, getAlignedSequence, getAlignedSequences, getAlignedSequences, getAlignedSequences, getCompoundAt, getCompoundAt, getCompoundCountsAt, getCompoundCountsAt, getCompoundsAt, getCompoundSet, getCompoundWeightsAt, getCompoundWeightsAt, getIndexOf, getIndicesAt, getLastIndexOf, getLength, getOriginalSequences, getSize, getSubProfile, hasGap, isCircular, toString, toString, toString |
Methods inherited from interface java.lang.Iterable |
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iterator |
Method Detail |
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Profile<S,C> getQuery()
Profile
of the pair.
Profile
of the pairProfile<S,C> getTarget()
Profile
of the pair.
Profile
of the pair
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