org.biojava3.alignment.aaindex
Class DefaultAAIndexProvider
java.lang.Object
org.biojava3.alignment.aaindex.DefaultAAIndexProvider
- All Implemented Interfaces:
- AAIndexProvider
public class DefaultAAIndexProvider
- extends Object
- implements AAIndexProvider
The default provider for AAINDEX loads substituion matrices from the AAINDEX file in the resources directory
- Author:
- Andreas Prlic
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
DefaultAAIndexProvider
public DefaultAAIndexProvider()
getMatrix
public SubstitutionMatrix<AminoAcidCompound> getMatrix(String matrixName)
- Specified by:
getMatrix
in interface AAIndexProvider
getInputStreamToAAindexFile
public InputStream getInputStreamToAAindexFile()