org.biojava3.protmod
Interface ProteinModification

All Known Implementing Classes:
ProteinModificationImpl

public interface ProteinModification

This interface defines information about a specific protein modification.

Since:
3.0
Author:
Jianjiong Gao

Method Summary
 ModificationCategory getCategory()
           
 ModificationCondition getCondition()
           
 String getDescription()
           
 String getFormula()
           
 String getId()
           
 Set<String> getKeywords()
           
 ModificationOccurrenceType getOccurrenceType()
           
 String getPdbccId()
           
 String getPdbccName()
           
 String getPsimodId()
           
 String getPsimodName()
           
 String getResidId()
           
 String getResidName()
           
 String getSystematicName()
           
 

Method Detail

getId

String getId()
Returns:
modification id.

getPdbccId

String getPdbccId()
Returns:
Protein Data Bank Chemical Component ID.

getPdbccName

String getPdbccName()
Returns:
Protein Data Bank Chemical Component name.

getResidId

String getResidId()
Returns:
RESID ID.

getResidName

String getResidName()
Returns:
RESID name.

getPsimodId

String getPsimodId()
Returns:
PSI-MOD ID.

getPsimodName

String getPsimodName()
Returns:
PSI-MOD name.

getSystematicName

String getSystematicName()
Returns:
Systematic name.

getDescription

String getDescription()
Returns:
Description.

getKeywords

Set<String> getKeywords()
Returns:
a set of keywords.

getCondition

ModificationCondition getCondition()
Returns:
ModificationCondition

getFormula

String getFormula()
Returns:
formula of the modified residue.

getCategory

ModificationCategory getCategory()
Returns:
the modification category.

getOccurrenceType

ModificationOccurrenceType getOccurrenceType()
Returns:
the modification occurrence type.