org.biojava3.core.sequence.compound
Class DNACompoundSet

java.lang.Object
  extended by org.biojava3.core.sequence.template.AbstractCompoundSet<C>
      extended by org.biojava3.core.sequence.template.AbstractNucleotideCompoundSet<NucleotideCompound>
          extended by org.biojava3.core.sequence.compound.DNACompoundSet
All Implemented Interfaces:
CompoundSet<NucleotideCompound>
Direct Known Subclasses:
AmbiguityDNACompoundSet

public class DNACompoundSet
extends AbstractNucleotideCompoundSet<NucleotideCompound>

Author:
Andy Yates

Constructor Summary
DNACompoundSet()
           
 
Method Summary
static DNACompoundSet getDNACompoundSet()
           
 NucleotideCompound newNucleotideCompound(String base, String complement, String... equivalents)
           
 
Methods inherited from class org.biojava3.core.sequence.template.AbstractNucleotideCompoundSet
addNucleotideCompound, calculateIndirectAmbiguities, getAmbiguity, isComplementable
 
Methods inherited from class org.biojava3.core.sequence.template.AbstractCompoundSet
addCompound, addCompound, addCompound, addEquivalent, compoundsEqual, compoundsEquivalent, equals, getAllCompounds, getCompoundForString, getEquivalentCompounds, getMaxSingleCompoundStringLength, getStringForCompound, hasCompound, hashCode, isCompoundStringLengthEqual, verifySequence
 
Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

DNACompoundSet

public DNACompoundSet()
Method Detail

getDNACompoundSet

public static DNACompoundSet getDNACompoundSet()

newNucleotideCompound

public NucleotideCompound newNucleotideCompound(String base,
                                                String complement,
                                                String... equivalents)
Specified by:
newNucleotideCompound in class AbstractNucleotideCompoundSet<NucleotideCompound>