org.biojava3.core.sequence.edits
Class Edit.Delete<C extends Compound>
java.lang.Object
org.biojava3.core.sequence.edits.Edit.AbstractEdit<C>
org.biojava3.core.sequence.edits.Edit.Delete<C>
- All Implemented Interfaces:
- Edit<C>
- Enclosing interface:
- Edit<C extends Compound>
public static class Edit.Delete<C extends Compound>
- extends Edit.AbstractEdit<C>
Implementation which allows for the deletion of bases from a Sequence
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Edit.Delete
public Edit.Delete(int position)
Edit.Delete
public Edit.Delete(int start,
int end)
getRealStart
protected int getRealStart()
getRealEnd
protected int getRealEnd()
getFivePrime
protected Sequence<C> getFivePrime(Sequence<C> editingSequence)
- Description copied from class:
Edit.AbstractEdit
- Should return the 5-prime end of the given Sequence according to
the edit. An empty Sequence is valid.
- Specified by:
getFivePrime
in class Edit.AbstractEdit<C extends Compound>
getThreePrime
protected Sequence<C> getThreePrime(Sequence<C> editingSequence)
- Description copied from class:
Edit.AbstractEdit
- Should return the 3-prime end of the given Sequence according to
the edit. An empty Sequence is valid.
- Specified by:
getThreePrime
in class Edit.AbstractEdit<C extends Compound>