org.biojava3.alignment.template
Interface MutableProfilePair<S extends Sequence<C>,C extends Compound>
- Type Parameters:
S
- each element of the alignment Profile
is of type SC
- each element of an AlignedSequence
is a Compound
of type C
- All Superinterfaces:
- Iterable<AlignedSequence<S,C>>, MutableProfile<S,C>, Profile<S,C>, ProfilePair<S,C>
public interface MutableProfilePair<S extends Sequence<C>,C extends Compound>
- extends MutableProfile<S,C>, ProfilePair<S,C>
Defines a mutable (editable) data structure for a ProfilePair
.
- Author:
- Mark Chapman
Methods inherited from interface org.biojava3.alignment.template.Profile |
getAlignedSequence, getAlignedSequence, getAlignedSequences, getAlignedSequences, getAlignedSequences, getCompoundAt, getCompoundAt, getCompoundCountsAt, getCompoundCountsAt, getCompoundsAt, getCompoundSet, getCompoundWeightsAt, getCompoundWeightsAt, getIndexOf, getIndicesAt, getLastIndexOf, getLength, getOriginalSequences, getSize, getSubProfile, hasGap, isCircular, toString, toString, toString |
setPair
void setPair(Profile<S,C> query,
Profile<S,C> target)
- Sets both
Profile
s of the pair.
- Parameters:
query
- becomes the first Profile
of the pairtarget
- becomes the second Profile
of the pair
- Throws:
IllegalArgumentException
- if query and target are different lengths
setQuery
void setQuery(Profile<S,C> query)
- Sets the first
Profile
of the pair.
- Parameters:
query
- becomes the first Profile
of the pair
- Throws:
IllegalArgumentException
- if (new) query and (old) target are different lengths
setTarget
void setTarget(Profile<S,C> target)
- Sets the second
Profile
of the pair.
- Parameters:
target
- becomes the second Profile
of the pair
- Throws:
IllegalArgumentException
- if (old) query and (new) target are different lengths