org.biojava.bio.structure.align.fatcat
Class FatCat
java.lang.Object
org.biojava.bio.structure.align.fatcat.FatCat
- Direct Known Subclasses:
- FatCatFlexible, FatCatRigid
public class FatCat
- extends Object
VERSION
public static final float VERSION
- See Also:
- Constant Field Values
newline
public static String newline
FatCat
public FatCat()
main
public static void main(String[] argv)
- See demo/FatCatDemo.java for an example how to run.
Launch FatCat from command line.
Parameters are:
- Parameters:
argv
-
toString
public String toString()
- Overrides:
toString
in class Object
printHelp
public String printHelp()
- print the -h help text.
alignRigid
public AFPChain alignRigid(Atom[] ca1,
Atom[] ca2)
throws StructureException
- Throws:
StructureException
alignRigid
public AFPChain alignRigid(Atom[] ca1,
Atom[] ca2,
FatCatParameters params)
throws StructureException
- Throws:
StructureException
alignFlexible
public AFPChain alignFlexible(Atom[] ca1,
Atom[] ca2,
FatCatParameters params)
throws StructureException
- Throws:
StructureException
align
protected AFPChain align(Atom[] ca1,
Atom[] ca2,
FatCatParameters params,
boolean doRigid)
throws StructureException
- Throws:
StructureException
getFatCatAligner
public FatCatAligner getFatCatAligner()