org.biojava3.genome.uniprot
Class UniprotToFasta
java.lang.Object
org.biojava3.genome.uniprot.UniprotToFasta
public class UniprotToFasta
- extends Object
- Author:
- Scooter
Method Summary |
static void |
main(String[] args)
|
void |
process(String uniprotDatFileName,
String fastaFileName)
Convert a Uniprot sequence file to a fasta file. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
UniprotToFasta
public UniprotToFasta()
main
public static void main(String[] args)
process
public void process(String uniprotDatFileName,
String fastaFileName)
throws Exception
- Convert a Uniprot sequence file to a fasta file. Allows you to download all sequence data for a species
and convert to fasta to be used in a blast database
- Parameters:
uniprotDatFileName
- fastaFileName
-
- Throws:
Exception