org.forester.surfacing
Class BasicDomainSimilarityCalculator
java.lang.Object
org.forester.surfacing.BasicDomainSimilarityCalculator
- All Implemented Interfaces:
- DomainSimilarityCalculator
public class BasicDomainSimilarityCalculator
- extends Object
- implements DomainSimilarityCalculator
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
BasicDomainSimilarityCalculator
public BasicDomainSimilarityCalculator(DomainSimilarity.DomainSimilaritySortField sort,
boolean sort_by_species_count_first,
boolean treat_as_binary_comparison)
calculateSimilarities
public SortedSet<DomainSimilarity> calculateSimilarities(PairwiseDomainSimilarityCalculator pairwise_calculator,
List<GenomeWideCombinableDomains> cdc_list,
boolean ignore_domains_without_combinations_in_any_genome,
boolean ignore_domains_specific_to_one_genome)
- Specified by:
calculateSimilarities
in interface DomainSimilarityCalculator