org.biojava3.genome.uniprot
Class UniprotToFasta

java.lang.Object
  extended by org.biojava3.genome.uniprot.UniprotToFasta

public class UniprotToFasta
extends Object

Author:
Scooter

Constructor Summary
UniprotToFasta()
           
 
Method Summary
static void main(String[] args)
           
 void process(String uniprotDatFileName, String fastaFileName)
          Convert a Uniprot sequence file to a fasta file.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

UniprotToFasta

public UniprotToFasta()
Method Detail

main

public static void main(String[] args)

process

public void process(String uniprotDatFileName,
                    String fastaFileName)
             throws Exception
Convert a Uniprot sequence file to a fasta file. Allows you to download all sequence data for a species and convert to fasta to be used in a blast database

Parameters:
uniprotDatFileName -
fastaFileName -
Throws:
Exception