org.forester.surfacing
Class DomainCountsDifferenceUtil
java.lang.Object
org.forester.surfacing.DomainCountsDifferenceUtil
public final class DomainCountsDifferenceUtil
- extends Object
Method Summary |
static void |
calculateCopyNumberDifferences(List<GenomeWideCombinableDomains> genomes,
SortedMap<Species,List<Protein>> protein_lists_per_species,
List<String> high_copy_base_species,
List<String> high_copy_target_species,
List<String> low_copy_species,
int min_diff,
Double factor,
File plain_output_dom,
File html_output_dom,
File html_output_dc,
Map<DomainId,List<GoId>> domain_id_to_go_ids_map,
Map<GoId,GoTerm> go_id_to_term_map,
File all_domains_go_ids_out_dom,
File passing_domains_go_ids_out_dom,
File proteins_file_base)
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Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
DomainCountsDifferenceUtil
public DomainCountsDifferenceUtil()
calculateCopyNumberDifferences
public static void calculateCopyNumberDifferences(List<GenomeWideCombinableDomains> genomes,
SortedMap<Species,List<Protein>> protein_lists_per_species,
List<String> high_copy_base_species,
List<String> high_copy_target_species,
List<String> low_copy_species,
int min_diff,
Double factor,
File plain_output_dom,
File html_output_dom,
File html_output_dc,
Map<DomainId,List<GoId>> domain_id_to_go_ids_map,
Map<GoId,GoTerm> go_id_to_term_map,
File all_domains_go_ids_out_dom,
File passing_domains_go_ids_out_dom,
File proteins_file_base)
throws IOException
- Throws:
IOException