org.biojava3.ws.alignment.qblast
Enum BlastOutputParameterEnum
java.lang.Object
java.lang.Enum<BlastOutputParameterEnum>
org.biojava3.ws.alignment.qblast.BlastOutputParameterEnum
- All Implemented Interfaces:
- Serializable, Comparable<BlastOutputParameterEnum>
public enum BlastOutputParameterEnum
- extends Enum<BlastOutputParameterEnum>
Output parameters accepted by QBlast service.
Not all are mandatory. Certain parameters only work with a subset of other parameters in the list.
Taken from Blast URL API
- Author:
- Gediminas Rimsa
ALIGNMENTS
public static final BlastOutputParameterEnum ALIGNMENTS
ALIGNMENT_VIEW
public static final BlastOutputParameterEnum ALIGNMENT_VIEW
DESCRIPTIONS
public static final BlastOutputParameterEnum DESCRIPTIONS
DATABASE_SORT
public static final BlastOutputParameterEnum DATABASE_SORT
DISPLAY_SORT
public static final BlastOutputParameterEnum DISPLAY_SORT
EXPECT_HIGH
public static final BlastOutputParameterEnum EXPECT_HIGH
EXPECT_LOW
public static final BlastOutputParameterEnum EXPECT_LOW
FORMAT_OBJECT
public static final BlastOutputParameterEnum FORMAT_OBJECT
FORMAT_ENTREZ_QUERY
public static final BlastOutputParameterEnum FORMAT_ENTREZ_QUERY
FORMAT_TYPE
public static final BlastOutputParameterEnum FORMAT_TYPE
HSP_SORT
public static final BlastOutputParameterEnum HSP_SORT
I_THRESH
public static final BlastOutputParameterEnum I_THRESH
MASK_CHAR
public static final BlastOutputParameterEnum MASK_CHAR
MASK_COLOR
public static final BlastOutputParameterEnum MASK_COLOR
NCBI_GI
public static final BlastOutputParameterEnum NCBI_GI
NOHEADER
public static final BlastOutputParameterEnum NOHEADER
NUM_OVERVIEW
public static final BlastOutputParameterEnum NUM_OVERVIEW
RID
public static final BlastOutputParameterEnum RID
SHOW_CDS_FEATURE
public static final BlastOutputParameterEnum SHOW_CDS_FEATURE
SHOW_LINKOUT
public static final BlastOutputParameterEnum SHOW_LINKOUT
SHOW_OVERVIEW
public static final BlastOutputParameterEnum SHOW_OVERVIEW
values
public static BlastOutputParameterEnum[] values()
- Returns an array containing the constants of this enum type, in
the order they are declared. This method may be used to iterate
over the constants as follows:
for (BlastOutputParameterEnum c : BlastOutputParameterEnum.values())
System.out.println(c);
- Returns:
- an array containing the constants of this enum type, in
the order they are declared
valueOf
public static BlastOutputParameterEnum valueOf(String name)
- Returns the enum constant of this type with the specified name.
The string must match exactly an identifier used to declare an
enum constant in this type. (Extraneous whitespace characters are
not permitted.)
- Parameters:
name
- the name of the enum constant to be returned.
- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum type has no constant
with the specified name
NullPointerException
- if the argument is null