org.forester.sdi
Class SDIse
java.lang.Object
org.forester.sdi.SDI
org.forester.sdi.SDIse
public class SDIse
- extends SDI
Constructor Summary |
SDIse(Phylogeny gene_tree,
Phylogeny species_tree)
Constructor which sets the gene tree and the species tree to be compared. |
SDIse
public SDIse(Phylogeny gene_tree,
Phylogeny species_tree)
- Constructor which sets the gene tree and the species tree to be compared.
species_tree is the species tree to which the gene tree gene_tree will be
compared to - with method "infer(boolean)". Both Trees must be completely
binary and rooted. The actual inference is accomplished with method
"infer(boolean)". The mapping cost L can then be calculated with method
"computeMappingCost()".
(Last modified: 01/11/01)
- Parameters:
gene_tree
- reference to a rooted binary gene Phylogeny to which assign
duplication vs speciation, must have species names in the
species name fields for all external nodesspecies_tree
- reference to a rooted binary species Phylogeny which might get
stripped in the process, must have species names in the
species name fields for all external nodes- See Also:
#infer(boolean)
,
SDI.computeMappingCostL()