org.forester.phylogeny.data
Class PropertiesMap

java.lang.Object
  extended by org.forester.phylogeny.data.PropertiesMap
All Implemented Interfaces:
PhylogenyData

public class PropertiesMap
extends Object
implements PhylogenyData


Constructor Summary
PropertiesMap()
           
 
Method Summary
 void addProperty(Property property)
           
 StringBuffer asSimpleText()
           
 StringBuffer asText()
           
 PhylogenyData copy()
          Creates a new PhylogenyData object with identical values as this PhylogenyData.
 SortedMap<String,Property> getProperties()
           
 Property[] getPropertiesArray()
           
 Property getProperty(String ref)
           
 String[] getPropertyRefs()
          Returns all property refs of this PhylogenyNode as String array.
 boolean isEqual(PhylogenyData data)
          Compares this PhylogenyData to PhylogenyData data.
 boolean refExists(String ref)
           
 StringBuffer toNHX()
           
 void toPhyloXML(Writer writer, int level, String indentation)
          Writes a phyloXML representation of this phylogeny data.
 String toString()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

PropertiesMap

public PropertiesMap()
Method Detail

addProperty

public void addProperty(Property property)
                 throws IllegalArgumentException
Throws:
IllegalArgumentException

asSimpleText

public StringBuffer asSimpleText()
Specified by:
asSimpleText in interface PhylogenyData

asText

public StringBuffer asText()
Specified by:
asText in interface PhylogenyData

copy

public PhylogenyData copy()
Description copied from interface: PhylogenyData
Creates a new PhylogenyData object with identical values as this PhylogenyData. This ~should~ return a deep copy, but not there yet.

Specified by:
copy in interface PhylogenyData
Returns:
a ~deep~ copy of this PhylogenyData

getProperties

public SortedMap<String,Property> getProperties()

getPropertiesArray

public Property[] getPropertiesArray()

getProperty

public Property getProperty(String ref)
                     throws IllegalArgumentException
Throws:
IllegalArgumentException

getPropertyRefs

public String[] getPropertyRefs()
Returns all property refs of this PhylogenyNode as String array.


isEqual

public boolean isEqual(PhylogenyData data)
Description copied from interface: PhylogenyData
Compares this PhylogenyData to PhylogenyData data. In general, this should return true if and only if all fiels are exactly identical.

Specified by:
isEqual in interface PhylogenyData
Returns:
in general, true if and only if all fiels are exactly identical, false otherwise

refExists

public boolean refExists(String ref)

toNHX

public StringBuffer toNHX()
Specified by:
toNHX in interface PhylogenyData

toPhyloXML

public void toPhyloXML(Writer writer,
                       int level,
                       String indentation)
                throws IOException
Description copied from interface: PhylogenyData
Writes a phyloXML representation of this phylogeny data.

Specified by:
toPhyloXML in interface PhylogenyData
Throws:
IOException

toString

public String toString()
Overrides:
toString in class Object