org.biojava3.alignment.routines
Class AlignerHelper.Cut
java.lang.Object
org.biojava3.alignment.routines.AlignerHelper.Cut
- Enclosing class:
- AlignerHelper
public static class AlignerHelper.Cut
- extends Object
Defines a 'cut' row for divide-and-conquer alignment in which a new anchor is found.
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
AlignerHelper.Cut
public AlignerHelper.Cut(int queryIndex,
int[] dim)
getQueryIndex
public int getQueryIndex()
getTargetIndex
public int getTargetIndex(int z)
update
public void update(int x,
int[] subproblem,
AlignerHelper.Last[][] pointers)