Class Summary |
Feature |
A Feature corresponds to a single row in a GFF file. |
FeatureHelper |
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FeatureList |
A list of FeatureI objects implemented using a Java ArrayList; corresponds to a GFF file. |
GCStats |
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GeneIDGFF2Reader |
http://www.bioperl.org/wiki/GTF
Read and write FeatureLists as GFF/GTF formatted files. |
GeneMarkGTFReader |
http://www.bioperl.org/wiki/GTF
Read and write FeatureLists as GFF/GTF formatted files. |
GFF3Reader |
http://www.bioperl.org/wiki/GTF
Read and write FeatureLists as GFF/GTF formatted files. |
GFF3Writer |
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Location |
A location on a sequence. |
LocIterator |
Move a sliding window over a Location. |