org.biojava3.genome.query
Class OutputHitsGFF

java.lang.Object
  extended by org.biojava3.genome.query.OutputHitsGFF

public class OutputHitsGFF
extends Object

Author:
Scooter Willis

Constructor Summary
OutputHitsGFF()
           
 
Method Summary
static void main(String[] args)
           
 void process(File blastXMLFile, File gffFile, File gffOutputFile, double maxEScore, double percentageAligned, boolean includeFrameShift, boolean includeNegativeStrand)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

OutputHitsGFF

public OutputHitsGFF()
Method Detail

process

public void process(File blastXMLFile,
                    File gffFile,
                    File gffOutputFile,
                    double maxEScore,
                    double percentageAligned,
                    boolean includeFrameShift,
                    boolean includeNegativeStrand)
             throws Exception
Throws:
Exception

main

public static void main(String[] args)