Package org.biojava3.alignment.aaindex

Interface Summary
AAIndexProvider  
 

Class Summary
AAindexFactory Factory class to get Providers for substitution matrices the are provided by the AAINDEX database.
AAIndexFileParser  
DefaultAAIndexProvider The default provider for AAINDEX loads substituion matrices from the AAINDEX file in the resources directory
ScaledSubstitutionMatrix The biojava-alignment module represents substitution matrices with short values.