org.biojava.bio.structure.align.fatcat.calc
Class FatCatAligner
java.lang.Object
org.biojava.bio.structure.align.fatcat.calc.FatCatAligner
public class FatCatAligner
- extends Object
A class that does calculations on an AFPChain
- Author:
- Andreas Prlic
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
debug
public static final boolean debug
- See Also:
- Constant Field Values
printTimeStamps
public static final boolean printTimeStamps
- See Also:
- Constant Field Values
FatCatAligner
public FatCatAligner()
getAfpChain
public AFPChain getAfpChain()
getTwistedGroups
public Group[] getTwistedGroups()
setTwistedGroups
public void setTwistedGroups(Group[] twistedGroups)
align
public void align(Atom[] ca1,
Atom[] ca2,
boolean doRigid,
FatCatParameters params)
throws StructureException
- Throws:
StructureException