org.biojava.bio.structure.align.client
Class JFatCatClient
java.lang.Object
org.biojava.bio.structure.align.client.JFatCatClient
public class JFatCatClient
- extends Object
Method Summary |
static String |
convertStreamToString(InputStream stream)
|
static AFPChain |
getAFPChainFromServer(String serverLocation,
String name1,
String name2,
Atom[] ca1,
Atom[] ca2)
|
static AFPChain |
getAFPChainFromServer(String serverLocation,
String method,
String name1,
String name2,
Atom[] ca1,
Atom[] ca2,
int timeout)
|
static PdbPairsMessage |
getPdbPairs(String url,
int nrPair,
String username)
|
int |
getPositionInQueue(String serverLocation,
String method,
String name1,
String name2)
|
int |
getPositionInQueue(String serverLocation,
String method,
String name1,
String name2,
int timeout)
|
static int |
getRandomSleepTime()
|
static SortedSet<String> |
getRepresentatives(String serverLocation,
int cutoff)
|
static int |
getTimeout()
|
static boolean |
hasPrecalculatedResult(String serverLocation,
String method,
String name1,
String name2)
|
static boolean |
hasPrecalculatedResult(String serverLocation,
String method,
String name1,
String name2,
int timeout)
|
static void |
main(String[] args)
|
static void |
sendAFPChainToServer(String serverLocation,
AFPChain afpChain,
Atom[] ca1,
Atom[] ca2)
|
static String |
sendMultiAFPChainToServer(String serverLocation,
String multiXML,
String username)
|
static String |
sendMultiAFPChainToServer(String serverLocation,
String multiXML,
String username,
String version)
|
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
JFatCatClient
public JFatCatClient()
main
public static void main(String[] args)
hasPrecalculatedResult
public static boolean hasPrecalculatedResult(String serverLocation,
String method,
String name1,
String name2)
hasPrecalculatedResult
public static boolean hasPrecalculatedResult(String serverLocation,
String method,
String name1,
String name2,
int timeout)
getPositionInQueue
public int getPositionInQueue(String serverLocation,
String method,
String name1,
String name2)
getPositionInQueue
public int getPositionInQueue(String serverLocation,
String method,
String name1,
String name2,
int timeout)
getAFPChainFromServer
public static AFPChain getAFPChainFromServer(String serverLocation,
String name1,
String name2,
Atom[] ca1,
Atom[] ca2)
getAFPChainFromServer
public static AFPChain getAFPChainFromServer(String serverLocation,
String method,
String name1,
String name2,
Atom[] ca1,
Atom[] ca2,
int timeout)
convertStreamToString
public static String convertStreamToString(InputStream stream)
sendMultiAFPChainToServer
public static String sendMultiAFPChainToServer(String serverLocation,
String multiXML,
String username)
throws JobKillException
- Throws:
JobKillException
sendMultiAFPChainToServer
public static String sendMultiAFPChainToServer(String serverLocation,
String multiXML,
String username,
String version)
throws JobKillException
- Throws:
JobKillException
getRandomSleepTime
public static int getRandomSleepTime()
sendAFPChainToServer
public static final void sendAFPChainToServer(String serverLocation,
AFPChain afpChain,
Atom[] ca1,
Atom[] ca2)
getTimeout
public static final int getTimeout()
getPdbPairs
public static final PdbPairsMessage getPdbPairs(String url,
int nrPair,
String username)
throws MalformedURLException,
IOException,
JobKillException
- Throws:
MalformedURLException
IOException
JobKillException
getRepresentatives
public static final SortedSet<String> getRepresentatives(String serverLocation,
int cutoff)