Package org.biojava3.core.sequence.template

Interface Summary
Accessioned Indicates an entity is accessioned
ComplementCompound  
Compound  
CompoundSet<C extends Compound>  
CompoundTranslator<F extends Compound,T extends Compound>  
LightweightProfile<S extends Sequence<C>,C extends Compound> Defines a minimal data structure for reading and writing a sequence alignment.
ProxySequenceReader<C extends Compound>  
Sequence<C extends Compound> Main interface for defining a collection of Compounds and accessing them using biological indexes
SequenceReader<C extends Compound>  
SequenceView<C extends Compound>  
 

Class Summary
AbstractCompound The details of a Compound
AbstractCompoundSet<C extends Compound>  
AbstractCompoundTranslator<F extends Compound,T extends Compound>  
AbstractNucleotideCompoundSet<C extends NucleotideCompound>  
AbstractSequence<C extends Compound> The base class for DNA, RNA and Protein sequences.
SequenceMixin Provides a set of static methods to be used as static imports when needed across multiple Sequence implementations but inheritance gets in the way.
SequenceMixin.SequenceIterator<C extends Compound> A basic sequence iterator which iterates over the given Sequence by biological index.
SequenceProxyView<C extends Compound>  
 

Enum Summary
AbstractSequence.AnnotationType  
LightweightProfile.StringFormat List of output formats.