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S
- each element of the alignment Profile
is of type SC
- each element of an AlignedSequence
is a Compound
of type Cpublic interface Aligner<S extends Sequence<C>,C extends Compound>
Defines an algorithm which computes an alignment Profile
from a list of Sequence
s.
Method Summary | |
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long |
getComputationTime()
Returns the computation time needed for an alignment computed in nanoseconds. |
Profile<S,C> |
getProfile()
Returns the alignment Profile produced by this alignment algorithm. |
Methods inherited from interface org.biojava3.alignment.template.Scorer |
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getDistance, getDistance, getMaxScore, getMinScore, getScore, getSimilarity, getSimilarity |
Method Detail |
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long getComputationTime()
Profile<S,C> getProfile()
Profile
produced by this alignment algorithm.
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