org.biojava3.alignment
Enum Alignments.ProfileProfileAlignerType

java.lang.Object
  extended by java.lang.Enum<Alignments.ProfileProfileAlignerType>
      extended by org.biojava3.alignment.Alignments.ProfileProfileAlignerType
All Implemented Interfaces:
Serializable, Comparable<Alignments.ProfileProfileAlignerType>
Enclosing class:
Alignments

public static enum Alignments.ProfileProfileAlignerType
extends Enum<Alignments.ProfileProfileAlignerType>

List of implemented profile-profile alignment routines.


Enum Constant Summary
GLOBAL
           
GLOBAL_CONSENSUS
           
GLOBAL_LINEAR_SPACE
           
LOCAL
           
LOCAL_CONSENSUS
           
LOCAL_LINEAR_SPACE
           
 
Method Summary
static Alignments.ProfileProfileAlignerType valueOf(String name)
          Returns the enum constant of this type with the specified name.
static Alignments.ProfileProfileAlignerType[] values()
          Returns an array containing the constants of this enum type, in the order they are declared.
 
Methods inherited from class java.lang.Enum
clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf
 
Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait
 

Enum Constant Detail

GLOBAL

public static final Alignments.ProfileProfileAlignerType GLOBAL

GLOBAL_LINEAR_SPACE

public static final Alignments.ProfileProfileAlignerType GLOBAL_LINEAR_SPACE

GLOBAL_CONSENSUS

public static final Alignments.ProfileProfileAlignerType GLOBAL_CONSENSUS

LOCAL

public static final Alignments.ProfileProfileAlignerType LOCAL

LOCAL_LINEAR_SPACE

public static final Alignments.ProfileProfileAlignerType LOCAL_LINEAR_SPACE

LOCAL_CONSENSUS

public static final Alignments.ProfileProfileAlignerType LOCAL_CONSENSUS
Method Detail

values

public static Alignments.ProfileProfileAlignerType[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
for (Alignments.ProfileProfileAlignerType c : Alignments.ProfileProfileAlignerType.values())
    System.out.println(c);

Returns:
an array containing the constants of this enum type, in the order they are declared

valueOf

public static Alignments.ProfileProfileAlignerType valueOf(String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:
name - the name of the enum constant to be returned.
Returns:
the enum constant with the specified name
Throws:
IllegalArgumentException - if this enum type has no constant with the specified name
NullPointerException - if the argument is null