org.biojava.bio.structure.align.seq
Class SmithWatermanUserArgumentProcessor

java.lang.Object
  extended by org.biojava.bio.structure.align.ce.AbstractUserArgumentProcessor
      extended by org.biojava.bio.structure.align.seq.SmithWatermanUserArgumentProcessor
All Implemented Interfaces:
UserArgumentProcessor

public class SmithWatermanUserArgumentProcessor
extends AbstractUserArgumentProcessor


Field Summary
 
Fields inherited from class org.biojava.bio.structure.align.ce.AbstractUserArgumentProcessor
mandatoryArgs, newline, params, PDB_DIR
 
Constructor Summary
SmithWatermanUserArgumentProcessor()
           
 
Method Summary
 StructureAlignment getAlgorithm()
           
 String getDbSearchLegend()
           
 Object getParameters()
           
 
Methods inherited from class org.biojava.bio.structure.align.ce.AbstractUserArgumentProcessor
getDbSearchResult, getMandatoryArgs, process
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

SmithWatermanUserArgumentProcessor

public SmithWatermanUserArgumentProcessor()
Method Detail

getAlgorithm

public StructureAlignment getAlgorithm()
Specified by:
getAlgorithm in class AbstractUserArgumentProcessor

getParameters

public Object getParameters()
Specified by:
getParameters in class AbstractUserArgumentProcessor

getDbSearchLegend

public String getDbSearchLegend()
Specified by:
getDbSearchLegend in class AbstractUserArgumentProcessor