org.biojava3.ws.alignment.qblast
Enum BlastOutputAlignmentFormatEnum

java.lang.Object
  extended by java.lang.Enum<BlastOutputAlignmentFormatEnum>
      extended by org.biojava3.ws.alignment.qblast.BlastOutputAlignmentFormatEnum
All Implemented Interfaces:
Serializable, Comparable<BlastOutputAlignmentFormatEnum>

public enum BlastOutputAlignmentFormatEnum
extends Enum<BlastOutputAlignmentFormatEnum>

Enum representing available output alignment types.

Values as used in QBlast URL API.

Author:
Gediminas Rimsa

Enum Constant Summary
FlatQueryAnchored
           
FlatQueryAnchoredNoIdentities
           
Pairwise
           
QueryAnchored
           
QueryAnchoredNoIdentities
           
Tabular
           
 
Method Summary
static BlastOutputAlignmentFormatEnum valueOf(String name)
          Returns the enum constant of this type with the specified name.
static BlastOutputAlignmentFormatEnum[] values()
          Returns an array containing the constants of this enum type, in the order they are declared.
 
Methods inherited from class java.lang.Enum
clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf
 
Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait
 

Enum Constant Detail

Pairwise

public static final BlastOutputAlignmentFormatEnum Pairwise

QueryAnchored

public static final BlastOutputAlignmentFormatEnum QueryAnchored

QueryAnchoredNoIdentities

public static final BlastOutputAlignmentFormatEnum QueryAnchoredNoIdentities

FlatQueryAnchored

public static final BlastOutputAlignmentFormatEnum FlatQueryAnchored

FlatQueryAnchoredNoIdentities

public static final BlastOutputAlignmentFormatEnum FlatQueryAnchoredNoIdentities

Tabular

public static final BlastOutputAlignmentFormatEnum Tabular
Method Detail

values

public static BlastOutputAlignmentFormatEnum[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
for (BlastOutputAlignmentFormatEnum c : BlastOutputAlignmentFormatEnum.values())
    System.out.println(c);

Returns:
an array containing the constants of this enum type, in the order they are declared

valueOf

public static BlastOutputAlignmentFormatEnum valueOf(String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:
name - the name of the enum constant to be returned.
Returns:
the enum constant with the specified name
Throws:
IllegalArgumentException - if this enum type has no constant with the specified name
NullPointerException - if the argument is null