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S
- each Sequence
in the tree is of type SC
- each element of a Sequence
is a Compound
of type Cpublic interface GuideTreeNode<S extends Sequence<C>,C extends Compound>
Defines a data structure for the node in a guide tree used during progressive multiple sequence alignment.
Method Summary | |
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GuideTreeNode<S,C> |
getChild1()
Returns the first child node of this node. |
GuideTreeNode<S,C> |
getChild2()
Returns the second child node of this node. |
double |
getDistanceToParent()
Returns the difference in height of this node and it's parent node. |
String |
getName()
Returns the name of this node. |
Profile<S,C> |
getProfile()
Returns the profile stored at this node. |
Future<ProfilePair<S,C>> |
getProfileFuture()
Returns the profile future stored at this node, but does not force the calculation, yet. |
void |
setProfile(Profile<S,C> profile)
Stores the given profile. |
void |
setProfileFuture(Future<ProfilePair<S,C>> profileFuture)
Stores the given profile future. |
Methods inherited from interface javax.swing.tree.TreeNode |
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children, getAllowsChildren, getChildAt, getChildCount, getIndex, getParent, isLeaf |
Method Detail |
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GuideTreeNode<S,C> getChild1()
GuideTreeNode<S,C> getChild2()
double getDistanceToParent()
String getName()
Profile<S,C> getProfile()
setProfile(Profile)
has been called.
Future<ProfilePair<S,C>> getProfileFuture()
void setProfile(Profile<S,C> profile)
profile
- new profile stored at this nodevoid setProfileFuture(Future<ProfilePair<S,C>> profileFuture)
profileFuture
- new profile to be calculated and then stored at this node
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