org.biojava.bio.structure.align
Class CallableStructureAlignment

java.lang.Object
  extended by org.biojava.bio.structure.align.CallableStructureAlignment
All Implemented Interfaces:
Callable<AFPChain>

public class CallableStructureAlignment
extends Object
implements Callable<AFPChain>


Constructor Summary
CallableStructureAlignment()
           
 
Method Summary
 AFPChain call()
           
 Atom[] getCa1()
           
 AtomCache getCache()
           
 SynchronizedOutFile getOutFile()
           
 PdbPair getPair()
           
 void setAlgorithmName(String algorithmName)
           
 void setCa1(Atom[] ca1)
           
 void setCache(AtomCache cache)
           
 void setOutFile(SynchronizedOutFile outFile)
           
 void setOutputDir(File outFileF)
           
 void setPair(PdbPair pair)
           
 void setParameters(ConfigStrucAligParams parameters)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

CallableStructureAlignment

public CallableStructureAlignment()
Method Detail

call

public AFPChain call()
              throws Exception
Specified by:
call in interface Callable<AFPChain>
Throws:
Exception

getPair

public PdbPair getPair()

setPair

public void setPair(PdbPair pair)

getCache

public AtomCache getCache()

setCache

public void setCache(AtomCache cache)

getOutFile

public SynchronizedOutFile getOutFile()

setOutFile

public void setOutFile(SynchronizedOutFile outFile)

getCa1

public Atom[] getCa1()

setCa1

public void setCa1(Atom[] ca1)

setOutputDir

public void setOutputDir(File outFileF)

setAlgorithmName

public void setAlgorithmName(String algorithmName)

setParameters

public void setParameters(ConfigStrucAligParams parameters)