org.forester.io.parsers.phyloxml
Class PhyloXmlMapping

java.lang.Object
  extended by org.forester.io.parsers.phyloxml.PhyloXmlMapping

public final class PhyloXmlMapping
extends Object


Field Summary
static String ACCESSION
           
static String ACCESSION_SOURCE_ATTR
           
static String ANNOTATION
           
static String ANNOTATION_DESC
           
static String ANNOTATION_EVIDENCE_ATTR
           
static String ANNOTATION_REF_ATTR
           
static String ANNOTATION_SOURCE_ATTR
           
static String ANNOTATION_TYPE_ATTR
           
static String BINARY_CHARACTER
           
static String BINARY_CHARACTERS
           
static String BINARY_CHARACTERS_GAINED
           
static String BINARY_CHARACTERS_GAINED_COUNT_ATTR
           
static String BINARY_CHARACTERS_LOST
           
static String BINARY_CHARACTERS_LOST_COUNT_ATTR
           
static String BINARY_CHARACTERS_PRESENT
           
static String BINARY_CHARACTERS_PRESENT_COUNT_ATTR
           
static String BINARY_CHARACTERS_TYPE_ATTR
           
static String BRANCH_LENGTH
           
static String CLADE
           
static String CLADE_DATE
           
static String CLADE_DATE_DESC
           
static String CLADE_DATE_MAX
           
static String CLADE_DATE_MIN
           
static String CLADE_DATE_UNIT
           
static String CLADE_DATE_VALUE
           
static String COLOR
           
static String COLOR_BLUE
           
static String COLOR_GREEN
           
static String COLOR_RED
           
static String CONFIDENCE
           
static String CONFIDENCE_TYPE_ATTR
           
static String DISTRIBUTION
           
static String DISTRIBUTION_DESC
           
static String EVENT_DUPLICATIONS
           
static String EVENT_LOSSES
           
static String EVENT_SPECIATIONS
           
static String EVENT_TYPE
           
static String EVENTS
           
static String ID_REF
           
static String IDENTIFIER
           
static String IDENTIFIER_PROVIDER_ATTR
           
static String NODE_NAME
           
static String PHYLOGENY
           
static String PHYLOGENY_BRANCHLENGTH_UNIT_ATTR
           
static String PHYLOGENY_DESCRIPTION
           
static String PHYLOGENY_IS_REROOTABLE_ATTR
           
static String PHYLOGENY_IS_ROOTED_ATTR
           
static String PHYLOGENY_NAME
           
static String PHYLOGENY_TYPE_ATTR
           
static String POINT
           
static String POINT_ALTITUDE
           
static String POINT_ALTITUDE_UNIT_ATTR
           
static String POINT_GEODETIC_DATUM
           
static String POINT_LATITUDE
           
static String POINT_LONGITUDE
           
static String PROPERTY
           
static String PROPERTY_APPLIES_TO
           
static String PROPERTY_DATATYPE
           
static String PROPERTY_REF
           
static String PROPERTY_UNIT
           
static String REFERENCE
           
static String REFERENCE_DESC
           
static String REFERENCE_DOI_ATTR
           
static String SEQUENCE
           
static String SEQUENCE_DOMAIN_ARCHITECTURE_DOMAIN
           
static String SEQUENCE_DOMAIN_ARCHITECTURE_LENGTH
           
static String SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_CONFIDENCE
           
static String SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_FROM
           
static String SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_TO
           
static String SEQUENCE_DOMAIN_ARCHITECURE
           
static String SEQUENCE_LOCATION
           
static String SEQUENCE_MOL_SEQ
           
static String SEQUENCE_NAME
           
static String SEQUENCE_SYMBOL
           
static String SEQUENCE_TYPE
           
static String TAXONOMY
           
static String TAXONOMY_AUTHORITY
           
static String TAXONOMY_CODE
           
static String TAXONOMY_COMMON_NAME
           
static String TAXONOMY_RANK
           
static String TAXONOMY_SCIENTIFIC_NAME
           
static String TAXONOMY_SYNONYM
           
static String TYPE_ATTR
           
static String URI
           
static String URI_DESC_ATTR
           
static String WIDTH
           
 
Method Summary
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

PHYLOGENY

public static final String PHYLOGENY
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Constant Field Values

PHYLOGENY_NAME

public static final String PHYLOGENY_NAME
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PHYLOGENY_DESCRIPTION

public static final String PHYLOGENY_DESCRIPTION
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PHYLOGENY_IS_REROOTABLE_ATTR

public static final String PHYLOGENY_IS_REROOTABLE_ATTR
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PHYLOGENY_BRANCHLENGTH_UNIT_ATTR

public static final String PHYLOGENY_BRANCHLENGTH_UNIT_ATTR
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PHYLOGENY_IS_ROOTED_ATTR

public static final String PHYLOGENY_IS_ROOTED_ATTR
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PHYLOGENY_TYPE_ATTR

public static final String PHYLOGENY_TYPE_ATTR
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CLADE

public static final String CLADE
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NODE_NAME

public static final String NODE_NAME
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SEQUENCE

public static final String SEQUENCE
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SEQUENCE_NAME

public static final String SEQUENCE_NAME
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SEQUENCE_SYMBOL

public static final String SEQUENCE_SYMBOL
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ACCESSION

public static final String ACCESSION
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ACCESSION_SOURCE_ATTR

public static final String ACCESSION_SOURCE_ATTR
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SEQUENCE_LOCATION

public static final String SEQUENCE_LOCATION
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SEQUENCE_MOL_SEQ

public static final String SEQUENCE_MOL_SEQ
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ANNOTATION

public static final String ANNOTATION
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ANNOTATION_DESC

public static final String ANNOTATION_DESC
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ANNOTATION_REF_ATTR

public static final String ANNOTATION_REF_ATTR
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ANNOTATION_EVIDENCE_ATTR

public static final String ANNOTATION_EVIDENCE_ATTR
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ANNOTATION_TYPE_ATTR

public static final String ANNOTATION_TYPE_ATTR
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Constant Field Values

TAXONOMY

public static final String TAXONOMY
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Constant Field Values

TAXONOMY_SCIENTIFIC_NAME

public static final String TAXONOMY_SCIENTIFIC_NAME
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TAXONOMY_COMMON_NAME

public static final String TAXONOMY_COMMON_NAME
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TAXONOMY_CODE

public static final String TAXONOMY_CODE
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TAXONOMY_RANK

public static final String TAXONOMY_RANK
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TAXONOMY_SYNONYM

public static final String TAXONOMY_SYNONYM
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TAXONOMY_AUTHORITY

public static final String TAXONOMY_AUTHORITY
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DISTRIBUTION

public static final String DISTRIBUTION
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BINARY_CHARACTERS

public static final String BINARY_CHARACTERS
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BINARY_CHARACTERS_PRESENT

public static final String BINARY_CHARACTERS_PRESENT
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BINARY_CHARACTERS_GAINED

public static final String BINARY_CHARACTERS_GAINED
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BINARY_CHARACTERS_LOST

public static final String BINARY_CHARACTERS_LOST
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BINARY_CHARACTERS_TYPE_ATTR

public static final String BINARY_CHARACTERS_TYPE_ATTR
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BINARY_CHARACTERS_PRESENT_COUNT_ATTR

public static final String BINARY_CHARACTERS_PRESENT_COUNT_ATTR
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BINARY_CHARACTERS_GAINED_COUNT_ATTR

public static final String BINARY_CHARACTERS_GAINED_COUNT_ATTR
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BINARY_CHARACTERS_LOST_COUNT_ATTR

public static final String BINARY_CHARACTERS_LOST_COUNT_ATTR
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BRANCH_LENGTH

public static final String BRANCH_LENGTH
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CONFIDENCE

public static final String CONFIDENCE
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CONFIDENCE_TYPE_ATTR

public static final String CONFIDENCE_TYPE_ATTR
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COLOR

public static final String COLOR
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COLOR_RED

public static final String COLOR_RED
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COLOR_GREEN

public static final String COLOR_GREEN
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COLOR_BLUE

public static final String COLOR_BLUE
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SEQUENCE_DOMAIN_ARCHITECTURE_DOMAIN

public static final String SEQUENCE_DOMAIN_ARCHITECTURE_DOMAIN
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SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_FROM

public static final String SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_FROM
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SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_TO

public static final String SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_TO
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SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_CONFIDENCE

public static final String SEQUENCE_DOMAIN_ARCHITECTURE_PROT_DOMAIN_CONFIDENCE
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IDENTIFIER

public static final String IDENTIFIER
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IDENTIFIER_PROVIDER_ATTR

public static final String IDENTIFIER_PROVIDER_ATTR
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URI

public static final String URI
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WIDTH

public static final String WIDTH
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EVENTS

public static final String EVENTS
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EVENT_TYPE

public static final String EVENT_TYPE
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EVENT_DUPLICATIONS

public static final String EVENT_DUPLICATIONS
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EVENT_SPECIATIONS

public static final String EVENT_SPECIATIONS
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EVENT_LOSSES

public static final String EVENT_LOSSES
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SEQUENCE_DOMAIN_ARCHITECURE

public static final String SEQUENCE_DOMAIN_ARCHITECURE
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SEQUENCE_DOMAIN_ARCHITECTURE_LENGTH

public static final String SEQUENCE_DOMAIN_ARCHITECTURE_LENGTH
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SEQUENCE_TYPE

public static final String SEQUENCE_TYPE
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BINARY_CHARACTER

public static final String BINARY_CHARACTER
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URI_DESC_ATTR

public static final String URI_DESC_ATTR
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TYPE_ATTR

public static final String TYPE_ATTR
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REFERENCE

public static final String REFERENCE
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REFERENCE_DOI_ATTR

public static final String REFERENCE_DOI_ATTR
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REFERENCE_DESC

public static final String REFERENCE_DESC
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PROPERTY

public static final String PROPERTY
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PROPERTY_REF

public static final String PROPERTY_REF
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PROPERTY_UNIT

public static final String PROPERTY_UNIT
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PROPERTY_DATATYPE

public static final String PROPERTY_DATATYPE
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PROPERTY_APPLIES_TO

public static final String PROPERTY_APPLIES_TO
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ID_REF

public static final String ID_REF
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ANNOTATION_SOURCE_ATTR

public static final String ANNOTATION_SOURCE_ATTR
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DISTRIBUTION_DESC

public static final String DISTRIBUTION_DESC
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POINT

public static final String POINT
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POINT_LONGITUDE

public static final String POINT_LONGITUDE
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POINT_LATITUDE

public static final String POINT_LATITUDE
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POINT_ALTITUDE

public static final String POINT_ALTITUDE
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POINT_ALTITUDE_UNIT_ATTR

public static final String POINT_ALTITUDE_UNIT_ATTR
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POINT_GEODETIC_DATUM

public static final String POINT_GEODETIC_DATUM
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CLADE_DATE

public static final String CLADE_DATE
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CLADE_DATE_UNIT

public static final String CLADE_DATE_UNIT
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CLADE_DATE_DESC

public static final String CLADE_DATE_DESC
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CLADE_DATE_MIN

public static final String CLADE_DATE_MIN
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CLADE_DATE_MAX

public static final String CLADE_DATE_MAX
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CLADE_DATE_VALUE

public static final String CLADE_DATE_VALUE
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