org.biojava3.core.sequence.location.template
Interface AccesionedLocation
- All Superinterfaces:
- Accessioned, Iterable<Location>, Location
public interface AccesionedLocation
- extends Location, Accessioned
A location which is bound to an AccessionID. This is common in
INSDC locations where a location actually points to a remote sequence. This
is especially common in records describing Genomic sequence assembly.
- Author:
- ayates
Nested classes/interfaces inherited from interface org.biojava3.core.sequence.location.template.Location |
Location.Tools |
Fields inherited from interface org.biojava3.core.sequence.location.template.Location |
EMPTY |
Methods inherited from interface org.biojava3.core.sequence.location.template.Location |
getEnd, getLength, getRelevantSubLocations, getRelevantSubSequence, getStart, getStrand, getSubLocations, getSubSequence, isBetweenCompounds, isCircular, isComplex |
getProxySequenceReader
ProxySequenceReader<? extends Compound> getProxySequenceReader()
- Return the proxy reader used to get sequence for this location. We
assume that AccessionID is bound to the instance to facilitate this
lookup.