org.forester.phylogenyinference
Interfaces 
CharacterStateMatrix
DistanceMatrix
DistanceMatrixParser
DistanceMethod
Classes 
BasicCharacterStateMatrix
BasicSymmetricalDistanceMatrix
DiscreteState
DolloParsimony
FitchParsimony
NeighborJoining
SankoffParsimony
SymmetricalDistanceMatrixParser
TestPhylogenyReconstruction
Enums 
CharacterStateMatrix.BinaryStates
CharacterStateMatrix.Format
CharacterStateMatrix.GainLossStates
CharacterStateMatrix.NucleotideStates
DistanceMatrix.Format
SymmetricalDistanceMatrixParser.InputMatrixType