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S
- each element of the alignment Profile
is of type SC
- each element of an AlignedSequence
is a Compound
of type Cpublic interface ProfileView<S extends Sequence<C>,C extends Compound>
Defines a data structure for a view of sequence alignment.
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biojava3.alignment.template.Profile |
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Profile.StringFormat |
Method Summary | |
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int |
getEnd()
Returns the column index of the viewed Profile corresponding to the final element in this view |
int |
getStart()
Returns the column index of the viewed Profile corresponding to the first element in this view |
Profile<S,C> |
getViewedProfile()
Returns the entire Profile being viewed |
Methods inherited from interface org.biojava3.alignment.template.Profile |
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getAlignedSequence, getAlignedSequence, getAlignedSequences, getAlignedSequences, getAlignedSequences, getCompoundAt, getCompoundAt, getCompoundCountsAt, getCompoundCountsAt, getCompoundsAt, getCompoundSet, getCompoundWeightsAt, getCompoundWeightsAt, getIndexOf, getIndicesAt, getLastIndexOf, getLength, getOriginalSequences, getSize, getSubProfile, hasGap, isCircular, toString, toString, toString |
Methods inherited from interface java.lang.Iterable |
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iterator |
Method Detail |
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int getEnd()
Profile
corresponding to the final element in this view
int getStart()
Profile
corresponding to the first element in this view
Profile<S,C> getViewedProfile()
Profile
being viewed
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