org.biojava3.aaproperties
Class Constraints
java.lang.Object
org.biojava3.aaproperties.Constraints
public class Constraints
- extends Object
This class is used to support the implementation of properties stated in IPeptideProperties.
It initializes several values that would be needed for the computation of properties such as
Molecular weight
Instability index
Hydropathy value
pKa
- Version:
- 2011.05.21
- Author:
- kohchuanhock
- See Also:
IPeptideProperties
Method Summary |
static void |
initExtinctionCoefficient()
Does the initialization of extinction coefficient based on
http://au.expasy.org/tools/protparam-doc.html |
static void |
initMolecularWeight()
Does the initialization of molecular weights based on http://au.expasy.org/tools/findmod/findmod_masses.html#AA |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
A
public static AminoAcidCompound A
R
public static AminoAcidCompound R
N
public static AminoAcidCompound N
D
public static AminoAcidCompound D
C
public static AminoAcidCompound C
E
public static AminoAcidCompound E
Q
public static AminoAcidCompound Q
G
public static AminoAcidCompound G
H
public static AminoAcidCompound H
I
public static AminoAcidCompound I
L
public static AminoAcidCompound L
K
public static AminoAcidCompound K
M
public static AminoAcidCompound M
F
public static AminoAcidCompound F
P
public static AminoAcidCompound P
S
public static AminoAcidCompound S
T
public static AminoAcidCompound T
W
public static AminoAcidCompound W
Y
public static AminoAcidCompound Y
V
public static AminoAcidCompound V
aa2ExtinctionCoefficient
public static Map<AminoAcidCompound,Double> aa2ExtinctionCoefficient
aa2MolecularWeight
public static Map<AminoAcidCompound,Double> aa2MolecularWeight
aa2Hydrophathicity
public static Map<AminoAcidCompound,Double> aa2Hydrophathicity
aa2PKa
public static Map<AminoAcidCompound,Double> aa2PKa
diAA2Instability
public static Map<String,Double> diAA2Instability
aa2NTerminalPka
public static Map<AminoAcidCompound,Double> aa2NTerminalPka
aa2CTerminalPka
public static Map<AminoAcidCompound,Double> aa2CTerminalPka
Constraints
public Constraints()
initMolecularWeight
public static void initMolecularWeight()
- Does the initialization of molecular weights based on http://au.expasy.org/tools/findmod/findmod_masses.html#AA
initExtinctionCoefficient
public static void initExtinctionCoefficient()
- Does the initialization of extinction coefficient based on
http://au.expasy.org/tools/protparam-doc.html