org.biojava3.core.sequence.storage
Class SequenceAsStringHelper<C extends Compound>

java.lang.Object
  extended by org.biojava3.core.sequence.storage.SequenceAsStringHelper<C>

public class SequenceAsStringHelper<C extends Compound>
extends Object

This is a common method that can be used across multiple storage/proxy implementations to handle Negative strand and other interesting elements of sequence data.

Author:
Scooter Willis

Constructor Summary
SequenceAsStringHelper()
           
 
Method Summary
 String getSequenceAsString(List<C> parsedCompounds, CompoundSet<C> compoundSet, Integer bioBegin, Integer bioEnd, Strand strand)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

SequenceAsStringHelper

public SequenceAsStringHelper()
Method Detail

getSequenceAsString

public String getSequenceAsString(List<C> parsedCompounds,
                                  CompoundSet<C> compoundSet,
                                  Integer bioBegin,
                                  Integer bioEnd,
                                  Strand strand)
Parameters:
parsedCompounds -
compoundSet -
bioBegin -
bioEnd -
strand -
Returns: