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S
- each Sequence
of the alignment pair is of type SC
- each element of an AlignedSequence
is a Compound
of type Cpublic interface PairwiseSequenceAligner<S extends Sequence<C>,C extends Compound>
Defines an Aligner
for a pair of Sequence
s.
Method Summary | |
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SequencePair<S,C> |
getPair()
Returns sequence alignment pair. |
Methods inherited from interface org.biojava3.alignment.template.Aligner |
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getComputationTime, getProfile |
Methods inherited from interface org.biojava3.alignment.template.PairwiseSequenceScorer |
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getQuery, getTarget |
Methods inherited from interface org.biojava3.alignment.template.Scorer |
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getDistance, getDistance, getMaxScore, getMinScore, getScore, getSimilarity, getSimilarity |
Method Detail |
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SequencePair<S,C> getPair()
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