org.biojava3.core.sequence.location
Class InsdcLocations.OrderLocation

java.lang.Object
  extended by org.biojava3.core.sequence.location.template.AbstractLocation
      extended by org.biojava3.core.sequence.location.SimpleLocation
          extended by org.biojava3.core.sequence.location.InsdcLocations.OrderLocation
All Implemented Interfaces:
Iterable<Location>, Location, Accessioned
Enclosing class:
InsdcLocations

public static class InsdcLocations.OrderLocation
extends SimpleLocation

Used to describe a 5' to 3' ordering but no firm assurance it is correct


Nested Class Summary
 
Nested classes/interfaces inherited from interface org.biojava3.core.sequence.location.template.Location
Location.Tools
 
Field Summary
 
Fields inherited from interface org.biojava3.core.sequence.location.template.Location
EMPTY
 
Constructor Summary
InsdcLocations.OrderLocation(int start, int end, Strand strand, List<Location> subLocations)
           
InsdcLocations.OrderLocation(int start, int end, Strand strand, Location... subLocations)
           
InsdcLocations.OrderLocation(Point start, Point end, Strand strand, boolean circular, List<Location> subLocations)
           
InsdcLocations.OrderLocation(Point start, Point end, Strand strand, boolean circular, Location... subLocations)
           
InsdcLocations.OrderLocation(Point start, Point end, Strand strand, List<Location> subLocations)
           
InsdcLocations.OrderLocation(Point start, Point end, Strand strand, Location... subLocations)
           
 
Method Summary
 
Methods inherited from class org.biojava3.core.sequence.location.template.AbstractLocation
assertLocation, canComplement, equals, getAccession, getEnd, getLength, getRelevantSubLocations, getRelevantSubSequence, getStart, getStrand, getSubLocations, getSubSequence, hashCode, isBetweenCompounds, isCircular, isComplex, iterator, reverseSequence, setAccession, setBetweenCompounds, setCircular, setEnd, setStart, setStrand, setSubLocations, toString
 
Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait
 

Constructor Detail

InsdcLocations.OrderLocation

public InsdcLocations.OrderLocation(Point start,
                                    Point end,
                                    Strand strand,
                                    boolean circular,
                                    Location... subLocations)

InsdcLocations.OrderLocation

public InsdcLocations.OrderLocation(Point start,
                                    Point end,
                                    Strand strand,
                                    Location... subLocations)

InsdcLocations.OrderLocation

public InsdcLocations.OrderLocation(int start,
                                    int end,
                                    Strand strand,
                                    Location... subLocations)

InsdcLocations.OrderLocation

public InsdcLocations.OrderLocation(Point start,
                                    Point end,
                                    Strand strand,
                                    boolean circular,
                                    List<Location> subLocations)

InsdcLocations.OrderLocation

public InsdcLocations.OrderLocation(Point start,
                                    Point end,
                                    Strand strand,
                                    List<Location> subLocations)

InsdcLocations.OrderLocation

public InsdcLocations.OrderLocation(int start,
                                    int end,
                                    Strand strand,
                                    List<Location> subLocations)