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Interface Summary | |
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Accessioned | Indicates an entity is accessioned |
ComplementCompound | |
Compound | |
CompoundSet<C extends Compound> | |
CompoundTranslator<F extends Compound,T extends Compound> | |
LightweightProfile<S extends Sequence<C>,C extends Compound> | Defines a minimal data structure for reading and writing a sequence alignment. |
ProxySequenceReader<C extends Compound> | |
Sequence<C extends Compound> | Main interface for defining a collection of Compounds and accessing them using biological indexes |
SequenceReader<C extends Compound> | |
SequenceView<C extends Compound> |
Class Summary | |
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AbstractCompound | The details of a Compound |
AbstractCompoundSet<C extends Compound> | |
AbstractCompoundTranslator<F extends Compound,T extends Compound> | |
AbstractNucleotideCompoundSet<C extends NucleotideCompound> | |
AbstractSequence<C extends Compound> | The base class for DNA, RNA and Protein sequences. |
SequenceMixin | Provides a set of static methods to be used as static imports when needed across multiple Sequence implementations but inheritance gets in the way. |
SequenceMixin.SequenceIterator<C extends Compound> | A basic sequence iterator which iterates over the given Sequence by biological index. |
SequenceProxyView<C extends Compound> |
Enum Summary | |
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AbstractSequence.AnnotationType | |
LightweightProfile.StringFormat | List of output formats. |
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