org.biojava3.ws.alignment.qblast
Enum BlastOutputParameterEnum

java.lang.Object
  extended by java.lang.Enum<BlastOutputParameterEnum>
      extended by org.biojava3.ws.alignment.qblast.BlastOutputParameterEnum
All Implemented Interfaces:
Serializable, Comparable<BlastOutputParameterEnum>

public enum BlastOutputParameterEnum
extends Enum<BlastOutputParameterEnum>

Output parameters accepted by QBlast service.
Not all are mandatory. Certain parameters only work with a subset of other parameters in the list.

Taken from Blast URL API

Author:
Gediminas Rimsa

Enum Constant Summary
ALIGNMENT_VIEW
           
ALIGNMENTS
           
DATABASE_SORT
           
DESCRIPTIONS
           
DISPLAY_SORT
           
EXPECT_HIGH
           
EXPECT_LOW
           
FORMAT_ENTREZ_QUERY
           
FORMAT_OBJECT
           
FORMAT_TYPE
           
HSP_SORT
           
I_THRESH
           
MASK_CHAR
           
MASK_COLOR
           
NCBI_GI
           
NOHEADER
           
NUM_OVERVIEW
           
RID
           
SHOW_CDS_FEATURE
           
SHOW_LINKOUT
           
SHOW_OVERVIEW
           
 
Method Summary
static BlastOutputParameterEnum valueOf(String name)
          Returns the enum constant of this type with the specified name.
static BlastOutputParameterEnum[] values()
          Returns an array containing the constants of this enum type, in the order they are declared.
 
Methods inherited from class java.lang.Enum
clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf
 
Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait
 

Enum Constant Detail

ALIGNMENTS

public static final BlastOutputParameterEnum ALIGNMENTS

ALIGNMENT_VIEW

public static final BlastOutputParameterEnum ALIGNMENT_VIEW

DESCRIPTIONS

public static final BlastOutputParameterEnum DESCRIPTIONS

DATABASE_SORT

public static final BlastOutputParameterEnum DATABASE_SORT

DISPLAY_SORT

public static final BlastOutputParameterEnum DISPLAY_SORT

EXPECT_HIGH

public static final BlastOutputParameterEnum EXPECT_HIGH

EXPECT_LOW

public static final BlastOutputParameterEnum EXPECT_LOW

FORMAT_OBJECT

public static final BlastOutputParameterEnum FORMAT_OBJECT

FORMAT_ENTREZ_QUERY

public static final BlastOutputParameterEnum FORMAT_ENTREZ_QUERY

FORMAT_TYPE

public static final BlastOutputParameterEnum FORMAT_TYPE

HSP_SORT

public static final BlastOutputParameterEnum HSP_SORT

I_THRESH

public static final BlastOutputParameterEnum I_THRESH

MASK_CHAR

public static final BlastOutputParameterEnum MASK_CHAR

MASK_COLOR

public static final BlastOutputParameterEnum MASK_COLOR

NCBI_GI

public static final BlastOutputParameterEnum NCBI_GI

NOHEADER

public static final BlastOutputParameterEnum NOHEADER

NUM_OVERVIEW

public static final BlastOutputParameterEnum NUM_OVERVIEW

RID

public static final BlastOutputParameterEnum RID

SHOW_CDS_FEATURE

public static final BlastOutputParameterEnum SHOW_CDS_FEATURE

SHOW_LINKOUT

public static final BlastOutputParameterEnum SHOW_LINKOUT

SHOW_OVERVIEW

public static final BlastOutputParameterEnum SHOW_OVERVIEW
Method Detail

values

public static BlastOutputParameterEnum[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
for (BlastOutputParameterEnum c : BlastOutputParameterEnum.values())
    System.out.println(c);

Returns:
an array containing the constants of this enum type, in the order they are declared

valueOf

public static BlastOutputParameterEnum valueOf(String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:
name - the name of the enum constant to be returned.
Returns:
the enum constant with the specified name
Throws:
IllegalArgumentException - if this enum type has no constant with the specified name
NullPointerException - if the argument is null