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Interface Summary | |
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AAIndexProvider |
Class Summary | |
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AAindexFactory | Factory class to get Providers for substitution matrices the are provided by the AAINDEX database. |
AAIndexFileParser | |
DefaultAAIndexProvider | The default provider for AAINDEX loads substituion matrices from the AAINDEX file in the resources directory |
ScaledSubstitutionMatrix | The biojava-alignment module represents substitution matrices with short values. |
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