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java.lang.Objectorg.biojava.bio.structure.io.LocalCacheStructureProvider
public class LocalCacheStructureProvider
Provides structures based on locally cached PDB files. The path where to cache this can be configured in FileParsingParameters
Field Summary | |
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static String |
lineSplit
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Constructor Summary | |
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LocalCacheStructureProvider()
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Method Summary | |
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Structure |
getBiologicalUnit(String pdbId)
Returns the first available biological unit for the PDB ID. |
FileParsingParameters |
getFileParsingParameters()
Get the parameters that should be used for file parsing |
String |
getPath()
Returns the path value. |
Structure |
getStructureById(String pdbId)
get the structure for a PDB ID |
void |
setFileParsingParameters(FileParsingParameters params)
Set the parameters that should be used for file parsing |
void |
setPath(String p)
directory where to find PDB files |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public static final String lineSplit
Constructor Detail |
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public LocalCacheStructureProvider()
Method Detail |
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public void setPath(String p)
public String getPath()
setPath(java.lang.String)
public Structure getStructureById(String pdbId) throws IOException
StructureProvider
getStructureById
in interface StructureProvider
IOException
public Structure getBiologicalUnit(String pdbId) throws StructureException, IOException
getBiologicalUnit
in interface StructureProvider
IOException
StructureException
public void setFileParsingParameters(FileParsingParameters params)
StructureProvider
setFileParsingParameters
in interface StructureProvider
params
- FileParsingParameterspublic FileParsingParameters getFileParsingParameters()
StructureProvider
getFileParsingParameters
in interface StructureProvider
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