org.biojava.bio.structure.align.ce
Interface ConfigStrucAligParams

All Known Implementing Classes:
CeParameters, FatCatParameters, OptimalCECPParameters, SmithWaterman3DParameters

public interface ConfigStrucAligParams


Method Summary
 List<String> getUserConfigHelp()
          The help text for each of these parameters.
 List<String> getUserConfigParameterNames()
          The labels to be displayed to the user for each parameter
 List<String> getUserConfigParameters()
          get the list of parameters that the user can change through the user interface.
 List<Class> getUserConfigTypes()
          Get the data types of the parameters
 void reset()
          Set the parameters to the default.
 

Method Detail

getUserConfigParameters

List<String> getUserConfigParameters()
get the list of parameters that the user can change through the user interface. Parameter names are the same names as the corresponding Get/Set methods.

Returns:
list of parameters

getUserConfigParameterNames

List<String> getUserConfigParameterNames()
The labels to be displayed to the user for each parameter

Returns:
list of parameter names

getUserConfigTypes

List<Class> getUserConfigTypes()
Get the data types of the parameters

Returns:
list of parameter classes

getUserConfigHelp

List<String> getUserConfigHelp()
The help text for each of these parameters.

Returns:
help strings

reset

void reset()
Set the parameters to the default.