org.biojava3.genome.homology
Class GFF3FromUniprotBlastHits

java.lang.Object
  extended by org.biojava3.genome.homology.GFF3FromUniprotBlastHits

public class GFF3FromUniprotBlastHits
extends Object

Author:
Scooter Willis , Mark Chapman

Constructor Summary
GFF3FromUniprotBlastHits()
           
 
Method Summary
static void main(String[] args)
           
 void process(File xmlBlastHits, double ecutoff, LinkedHashMap<String,GeneSequence> geneSequenceHashMap, OutputStream gff3Output)
           
 void process(LinkedHashMap<String,ArrayList<String>> hits, LinkedHashMap<String,GeneSequence> geneSequenceHashMap, OutputStream gff3Output)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

GFF3FromUniprotBlastHits

public GFF3FromUniprotBlastHits()
Method Detail

process

public void process(File xmlBlastHits,
                    double ecutoff,
                    LinkedHashMap<String,GeneSequence> geneSequenceHashMap,
                    OutputStream gff3Output)
             throws Exception
Throws:
Exception

process

public void process(LinkedHashMap<String,ArrayList<String>> hits,
                    LinkedHashMap<String,GeneSequence> geneSequenceHashMap,
                    OutputStream gff3Output)
             throws Exception
Throws:
Exception

main

public static void main(String[] args)