Package org.biojava.bio.structure.align

Classes for the alignment of structures.

See:
          Description

Interface Summary
StructureAlignment  
 

Class Summary
AbstractStructureAlignment  
AFPTwister  
BioJavaStructureAlignment Wrapper for the BioJava Structure Alignment Implementation
CallableStructureAlignment  
ClusterAltAligs A class that clusters alternative alignments according to their similarity.
FarmJob A job as it can be run on the farm.
StrucAligParameters A class that contains all the parameters of the structure alignment algorithm.
StructureAlignmentFactory  
StructurePairAligner Perform a pairwise protein structure superimposition.
 

Package org.biojava.bio.structure.align Description

Classes for the alignment of structures. This is the unpublished legacy implementation from the time, before BioJava supported CE and FATCAT alignments. See the StructurePairAligner for an example.