org.biojava3.core.sequence.io
Class RNASequenceCreator

java.lang.Object
  extended by org.biojava3.core.sequence.io.RNASequenceCreator
All Implemented Interfaces:
SequenceCreatorInterface<NucleotideCompound>

public class RNASequenceCreator
extends Object
implements SequenceCreatorInterface<NucleotideCompound>

Used to create a RNA sequence

Author:
Scooter Willis

Constructor Summary
RNASequenceCreator(CompoundSet<NucleotideCompound> compoundSet)
           
 
Method Summary
 AbstractSequence<NucleotideCompound> getSequence(List<NucleotideCompound> list)
           
 AbstractSequence<NucleotideCompound> getSequence(ProxySequenceReader<NucleotideCompound> proxyLoader, long index)
           
 AbstractSequence<NucleotideCompound> getSequence(String sequence, long index)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

RNASequenceCreator

public RNASequenceCreator(CompoundSet<NucleotideCompound> compoundSet)
Parameters:
compoundSet -
Method Detail

getSequence

public AbstractSequence<NucleotideCompound> getSequence(String sequence,
                                                        long index)
Specified by:
getSequence in interface SequenceCreatorInterface<NucleotideCompound>
Parameters:
sequence -
index -
Returns:

getSequence

public AbstractSequence<NucleotideCompound> getSequence(ProxySequenceReader<NucleotideCompound> proxyLoader,
                                                        long index)
Specified by:
getSequence in interface SequenceCreatorInterface<NucleotideCompound>
Parameters:
proxyLoader -
index -
Returns:

getSequence

public AbstractSequence<NucleotideCompound> getSequence(List<NucleotideCompound> list)
Specified by:
getSequence in interface SequenceCreatorInterface<NucleotideCompound>
Parameters:
list -
Returns: