Package org.biojava3.genome.parsers.gff

Interface Summary
FeatureI A feature on a sequence (for example, an exon or a gene), defined by a location and a set of attributes encoded as key/value pairs.
 

Class Summary
Feature A Feature corresponds to a single row in a GFF file.
FeatureHelper  
FeatureList A list of FeatureI objects implemented using a Java ArrayList; corresponds to a GFF file.
GCStats  
GeneIDGFF2Reader http://www.bioperl.org/wiki/GTF Read and write FeatureLists as GFF/GTF formatted files.
GeneMarkGTFReader http://www.bioperl.org/wiki/GTF Read and write FeatureLists as GFF/GTF formatted files.
GFF3Reader http://www.bioperl.org/wiki/GTF Read and write FeatureLists as GFF/GTF formatted files.
GFF3Writer  
Location A location on a sequence.
LocIterator Move a sliding window over a Location.