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S
- each element of the alignment Profile
is of type SC
- each element of an AlignedSequence
is a Compound
of type Cpublic interface MutableProfile<S extends Sequence<C>,C extends Compound>
Defines a mutable (editable) data structure for a Profile
. Returned List
s are modifiable.
Nested Class Summary |
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Nested classes/interfaces inherited from interface org.biojava3.alignment.template.Profile |
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Profile.StringFormat |
Method Summary | |
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void |
setSequences(List<AlignedSequence<S,C>> sequences)
Sets entirely new set of AlignedSequence s. |
Methods inherited from interface org.biojava3.alignment.template.Profile |
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getAlignedSequence, getAlignedSequence, getAlignedSequences, getAlignedSequences, getAlignedSequences, getCompoundAt, getCompoundAt, getCompoundCountsAt, getCompoundCountsAt, getCompoundsAt, getCompoundSet, getCompoundWeightsAt, getCompoundWeightsAt, getIndexOf, getIndicesAt, getLastIndexOf, getLength, getOriginalSequences, getSize, getSubProfile, hasGap, isCircular, toString, toString, toString |
Methods inherited from interface java.lang.Iterable |
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iterator |
Method Detail |
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void setSequences(List<AlignedSequence<S,C>> sequences)
AlignedSequence
s.
sequences
- new set of sequences
IllegalArgumentException
- if sequences have different lengths
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