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java.lang.Objectorg.biojava3.protmod.ProteinModificationImpl.Builder
public static class ProteinModificationImpl.Builder
Uses Builder pattern to build a ProteinModification.
Constructor Summary | |
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ProteinModificationImpl.Builder(ProteinModification copyFrom)
Create a Builder from an existing ProteinModification. |
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ProteinModificationImpl.Builder(String id,
ModificationCategory cat,
ModificationOccurrenceType occType,
ModificationCondition condition)
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Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public ProteinModificationImpl.Builder(String id, ModificationCategory cat, ModificationOccurrenceType occType, ModificationCondition condition)
id
- cat
- occType
- condition
- public ProteinModificationImpl.Builder(ProteinModification copyFrom)
copyFrom
- the ProteinModification to be copied from.Method Detail |
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public ProteinModificationImpl.Builder setCategory(ModificationCategory cat)
public ProteinModificationImpl.Builder setOccurrenceType(ModificationOccurrenceType occType)
public ProteinModificationImpl.Builder setCondition(ModificationCondition condition)
public ProteinModificationImpl.Builder setPdbccId(String pdbccId)
pdbccId
- Protein Data Bank Chemical Component ID.
public ProteinModificationImpl.Builder setPdbccName(String pdbccName)
pdbccName
- Protein Data Bank Chemical Component name.
public ProteinModificationImpl.Builder setResidId(String residId)
residId
- RESID ID.
public ProteinModificationImpl.Builder setResidName(String residName)
residName
- RESID name.
public ProteinModificationImpl.Builder setPsimodId(String psimodId)
psimodId
- PSI-MOD ID.
public ProteinModificationImpl.Builder setPsimodName(String psimodName)
psimodName
- PSI-MOD name.
public ProteinModificationImpl.Builder setSystematicName(String sysName)
sysName
- systematic name.
public ProteinModificationImpl.Builder setDescription(String description)
description
- description of the modification.
public ProteinModificationImpl.Builder addKeyword(String keyword)
keyword
- a keyword.
IllegalArgumentException
- if the keyword is null.public ProteinModificationImpl.Builder addKeywords(Collection<String> keywords)
public ProteinModificationImpl.Builder setFormula(String formula)
formula
- residue formula.
public ProteinModificationImpl build()
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