Package org.biojava3.aaproperties.profeat.convertor

Set of classes that enable the conversion protein sequences into various attributes.

See:
          Description

Class Summary
Convert2Charge  
Convert2Hydrophobicity  
Convert2NormalizedVanDerWaalsVolume  
Convert2Polarity  
Convert2Polarizability  
Convert2SecondaryStructure  
Convert2SolventAccessibility  
Convertor  
 

Package org.biojava3.aaproperties.profeat.convertor Description

Set of classes that enable the conversion protein sequences into various attributes. The seven different attributes are

Hydrophobicity (Polar, Neutral, Hydrophobicity)
Normalized van der Waals volume (Range 0 - 2.78, 2.95 - 4.0, 4.03 - 8.08)
Polarity (Value 4.9 - 6.2, 8.0 - 9.2, 10.4 - 13.0)
Polarizability (Value 0 - 1.08, 0.128 - 0.186, 0.219 - 0.409)
Charge (Positive, Neutral, Negative)
Secondary structure (Helix, Strand, Coil)
Solvent accessibility (Buried, Exposed, Intermediate)

Since:
3.0.2
Version:
2011.08.22
Author:
Koh Chuan Hock