org.biojava.bio.structure.align.pairwise
Class AlignmentResult
java.lang.Object
org.biojava.bio.structure.align.pairwise.AlignmentResult
- All Implemented Interfaces:
- Serializable
public class AlignmentResult
- extends Object
- implements Serializable
A class to track the alignment results in a flat file
- Author:
- andreas
- See Also:
- Serialized Form
AlignmentResult
public AlignmentResult()
toString
public String toString()
- Overrides:
toString
in class Object
getAlignments
public AlternativeAlignment[] getAlignments()
setAlignments
public void setAlignments(AlternativeAlignment[] alignments)
- we only keep the first alternative...
- Parameters:
alignments
-
getPdb1
public String getPdb1()
setPdb1
public void setPdb1(String pdb1)
getPdb2
public String getPdb2()
setPdb2
public void setPdb2(String pdb2)
getChain1
public String getChain1()
setChain1
public void setChain1(String chain1)
getChain2
public String getChain2()
setChain2
public void setChain2(String chain2)
getLength1
public int getLength1()
setLength1
public void setLength1(int length1)
getLength2
public int getLength2()
setLength2
public void setLength2(int length2)
getCalculationTime
public long getCalculationTime()
setCalculationTime
public void setCalculationTime(long calculationTime)
getIoTime
public long getIoTime()
setIoTime
public void setIoTime(long ioTime)
serialize
public void serialize(File output)
throws FileNotFoundException,
IOException
- Throws:
FileNotFoundException
IOException
deserialize
public static AlignmentResult deserialize(File output)
throws FileNotFoundException,
IOException,
ClassNotFoundException
- Throws:
FileNotFoundException
IOException
ClassNotFoundException