org.forester.phylogeny.data
Class Property

java.lang.Object
  extended by org.forester.phylogeny.data.Property
All Implemented Interfaces:
PhylogenyData

public class Property
extends Object
implements PhylogenyData


Nested Class Summary
static class Property.AppliesTo
           
 
Constructor Summary
Property(String ref, String value, String unit, String datatype, Property.AppliesTo applies_to)
           
Property(String ref, String value, String unit, String datatype, Property.AppliesTo applies_to, String id_ref)
           
 
Method Summary
 StringBuffer asSimpleText()
           
 StringBuffer asText()
           
 PhylogenyData copy()
          Creates a new PhylogenyData object with identical values as this PhylogenyData.
static Property createFromNhxString(String nhx)
           
 Property.AppliesTo getAppliesTo()
           
 String getDataType()
           
 String getIdRef()
           
 String getRef()
           
 String getUnit()
           
 String getValue()
           
 boolean isEqual(PhylogenyData data)
          Compares this PhylogenyData to PhylogenyData data.
 StringBuffer toNHX()
           
 void toPhyloXML(Writer writer, int level, String indentation)
          Writes a phyloXML representation of this phylogeny data.
 String toString()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

Property

public Property(String ref,
                String value,
                String unit,
                String datatype,
                Property.AppliesTo applies_to)

Property

public Property(String ref,
                String value,
                String unit,
                String datatype,
                Property.AppliesTo applies_to,
                String id_ref)
Method Detail

asSimpleText

public StringBuffer asSimpleText()
Specified by:
asSimpleText in interface PhylogenyData

asText

public StringBuffer asText()
Specified by:
asText in interface PhylogenyData

copy

public PhylogenyData copy()
Description copied from interface: PhylogenyData
Creates a new PhylogenyData object with identical values as this PhylogenyData. This ~should~ return a deep copy, but not there yet.

Specified by:
copy in interface PhylogenyData
Returns:
a ~deep~ copy of this PhylogenyData

getAppliesTo

public Property.AppliesTo getAppliesTo()

getDataType

public String getDataType()

getIdRef

public String getIdRef()

getRef

public String getRef()

getUnit

public String getUnit()

getValue

public String getValue()

isEqual

public boolean isEqual(PhylogenyData data)
Description copied from interface: PhylogenyData
Compares this PhylogenyData to PhylogenyData data. In general, this should return true if and only if all fiels are exactly identical.

Specified by:
isEqual in interface PhylogenyData
Returns:
in general, true if and only if all fiels are exactly identical, false otherwise

toNHX

public StringBuffer toNHX()
Specified by:
toNHX in interface PhylogenyData

toPhyloXML

public void toPhyloXML(Writer writer,
                       int level,
                       String indentation)
                throws IOException
Description copied from interface: PhylogenyData
Writes a phyloXML representation of this phylogeny data.

Specified by:
toPhyloXML in interface PhylogenyData
Throws:
IOException

toString

public String toString()
Overrides:
toString in class Object

createFromNhxString

public static Property createFromNhxString(String nhx)
                                    throws IllegalArgumentException
Throws:
IllegalArgumentException