org.biojava.bio.structure.align.fatcat.calc
Class AFPCalculator

java.lang.Object
  extended by org.biojava.bio.structure.align.fatcat.calc.AFPCalculator

public class AFPCalculator
extends Object

a class that performs calculations on AFPCHains

Author:
Andreas Prlic

Field Summary
static boolean debug
           
 
Constructor Summary
AFPCalculator()
           
 
Method Summary
static void extractAFPChains(FatCatParameters params, AFPChain afpChain, Atom[] ca1, Atom[] ca2)
           
static void sortAfps(AFPChain afpChain, Atom[] ca1, Atom[] ca2)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

debug

public static final boolean debug
See Also:
Constant Field Values
Constructor Detail

AFPCalculator

public AFPCalculator()
Method Detail

extractAFPChains

public static final void extractAFPChains(FatCatParameters params,
                                          AFPChain afpChain,
                                          Atom[] ca1,
                                          Atom[] ca2)

sortAfps

public static final void sortAfps(AFPChain afpChain,
                                  Atom[] ca1,
                                  Atom[] ca2)