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public interface FastqReader
Reader for FASTQ formatted sequences.
Method Summary | ||
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parse(
Parse the specified input supplier. |
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Iterable<Fastq> |
read(File file)
Read zero or more FASTQ formatted sequences from the specified file. |
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Iterable<Fastq> |
read(InputStream inputStream)
Read zero or more FASTQ formatted sequences from the specified input stream. |
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Iterable<Fastq> |
read(URL url)
Read zero or more FASTQ formatted sequences from the specified url. |
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stream(
Stream the specified input supplier. |
Method Detail |
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<R extends Readable & Closeable> void parse(supplier, ParseListener listener) throws IOException
supplier
- input supplier, must not be nulllistener
- low-level event based parser callback, must not be null
IOException
- if an I/O error occurs<R extends Readable & Closeable> void stream(supplier, StreamListener listener) throws IOException
supplier
- input supplier, must not be nulllistener
- event based reader callback, must not be null
IOException
- if an I/O error occursIterable<Fastq> read(File file) throws IOException
file
- file to read from, must not be null
IOException
- if an I/O error occursIterable<Fastq> read(URL url) throws IOException
url
- URL to read from, must not be null
IOException
- if an I/O error occursIterable<Fastq> read(InputStream inputStream) throws IOException
inputStream
- input stream to read from, must not be null
IOException
- if an I/O error occurs
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