|
|||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | ||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
public interface StructureAlignment
Method Summary | |
---|---|
AFPChain |
align(Atom[] ca1,
Atom[] ca2)
Run an alignment while specifying the atoms to be aligned. |
AFPChain |
align(Atom[] ca1,
Atom[] ca2,
Object params)
run an alignment and also send a bean containing the parameters. |
String |
getAlgorithmName()
Get the name of the Algorithm |
ConfigStrucAligParams |
getParameters()
Return the paramers for this algorithm. |
String |
getVersion()
Get the Version information for this Algorithm. |
String |
printHelp()
Returns some documentation on the command line arguments for this algorithm. |
void |
setParameters(ConfigStrucAligParams parameters)
Set the default parameters for this algorithm to use |
Method Detail |
---|
AFPChain align(Atom[] ca1, Atom[] ca2) throws StructureException
ca1
- ca2
-
StructureException
AFPChain align(Atom[] ca1, Atom[] ca2, Object params) throws StructureException
ca1
- ca2
- params
-
StructureException
ConfigStrucAligParams getParameters()
void setParameters(ConfigStrucAligParams parameters)
parameters
- String getAlgorithmName()
String getVersion()
String printHelp()
|
|||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | ||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |