org.forester.application
Class CheckTreeAccuracy

java.lang.Object
  extended by org.forester.application.CheckTreeAccuracy

public class CheckTreeAccuracy
extends Object

Author:
Scooter

Constructor Summary
CheckTreeAccuracy()
           
 
Method Summary
 PhylogenyNode findCommonParent(PhylogenyNode node)
           
 double getNodeDistance(PhylogenyNode parentNode, PhylogenyNode childNode)
           
 void markPathToRoot(PhylogenyNode node, boolean value)
           
 void process(Phylogeny tree, DistanceMatrix matrix)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

CheckTreeAccuracy

public CheckTreeAccuracy()
Method Detail

process

public void process(Phylogeny tree,
                    DistanceMatrix matrix)

getNodeDistance

public double getNodeDistance(PhylogenyNode parentNode,
                              PhylogenyNode childNode)

findCommonParent

public PhylogenyNode findCommonParent(PhylogenyNode node)

markPathToRoot

public void markPathToRoot(PhylogenyNode node,
                           boolean value)