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S
- each Sequence
in the pair of alignment Profile
s is of type SC
- each element of an AlignedSequence
is a Compound
of type Cpublic interface ProfileProfileScorer<S extends Sequence<C>,C extends Compound>
Defines an algorithm which computes a score for a pairing of alignment profiles.
Method Summary | |
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Profile<S,C> |
getQuery()
Returns the first profile of the pair. |
Profile<S,C> |
getTarget()
Returns the second profile of the pair. |
Methods inherited from interface org.biojava3.alignment.template.Scorer |
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getDistance, getDistance, getMaxScore, getMinScore, getScore, getSimilarity, getSimilarity |
Method Detail |
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Profile<S,C> getQuery()
Profile<S,C> getTarget()
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