org.biojava3.core.sequence.io
Class FastaSequenceParser

java.lang.Object
  extended by org.biojava3.core.sequence.io.FastaSequenceParser
All Implemented Interfaces:
SequenceParserInterface

public class FastaSequenceParser
extends Object
implements SequenceParserInterface

Used to parse a stream of a fasta file to get the sequence

Author:
Scooter Willis

Constructor Summary
FastaSequenceParser()
           
 
Method Summary
 String getSequence(DataInput dataInput, int sequenceLength)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

FastaSequenceParser

public FastaSequenceParser()
Method Detail

getSequence

public String getSequence(DataInput dataInput,
                          int sequenceLength)
                   throws Exception
Specified by:
getSequence in interface SequenceParserInterface
Returns:
Throws:
Exception