org.biojava3.alignment
Enum Alignments.PairwiseSequenceScorerType
java.lang.Object
java.lang.Enum<Alignments.PairwiseSequenceScorerType>
org.biojava3.alignment.Alignments.PairwiseSequenceScorerType
- All Implemented Interfaces:
- Serializable, Comparable<Alignments.PairwiseSequenceScorerType>
- Enclosing class:
- Alignments
public static enum Alignments.PairwiseSequenceScorerType
- extends Enum<Alignments.PairwiseSequenceScorerType>
List of implemented pairwise sequence scoring routines.
GLOBAL
public static final Alignments.PairwiseSequenceScorerType GLOBAL
GLOBAL_IDENTITIES
public static final Alignments.PairwiseSequenceScorerType GLOBAL_IDENTITIES
GLOBAL_SIMILARITIES
public static final Alignments.PairwiseSequenceScorerType GLOBAL_SIMILARITIES
LOCAL
public static final Alignments.PairwiseSequenceScorerType LOCAL
LOCAL_IDENTITIES
public static final Alignments.PairwiseSequenceScorerType LOCAL_IDENTITIES
LOCAL_SIMILARITIES
public static final Alignments.PairwiseSequenceScorerType LOCAL_SIMILARITIES
KMERS
public static final Alignments.PairwiseSequenceScorerType KMERS
WU_MANBER
public static final Alignments.PairwiseSequenceScorerType WU_MANBER
values
public static Alignments.PairwiseSequenceScorerType[] values()
- Returns an array containing the constants of this enum type, in
the order they are declared. This method may be used to iterate
over the constants as follows:
for (Alignments.PairwiseSequenceScorerType c : Alignments.PairwiseSequenceScorerType.values())
System.out.println(c);
- Returns:
- an array containing the constants of this enum type, in
the order they are declared
valueOf
public static Alignments.PairwiseSequenceScorerType valueOf(String name)
- Returns the enum constant of this type with the specified name.
The string must match exactly an identifier used to declare an
enum constant in this type. (Extraneous whitespace characters are
not permitted.)
- Parameters:
name
- the name of the enum constant to be returned.
- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum type has no constant
with the specified name
NullPointerException
- if the argument is null