Package org.biojava3.aaproperties

Set of classes that responsible for providing APIs and Command Prompt access to generate some basic physico-chemical properties of protein sequences.

See:
          Description

Interface Summary
IPeptideProperties An interface to generate some basic physico-chemical properties of protein sequences.
The following properties could be generated:

Molecular weight
Absorbance
Extinction coefficient
Instability index
Apliphatic index
Average hydropathy value
Isoelectric point
Net charge at pH 7
Composition of specified amino acid
Composition of the 20 standard amino acid

 

Class Summary
CommandPrompt  
Constraints This class is used to support the implementation of properties stated in IPeptideProperties.
PeptideProperties This is an adaptor class which enable the ease of generating protein properties.
PeptidePropertiesImpl This class contains the actual implementation of IPeptideProperties and is wrapped around by PeptideProperties for ease of use.
Utils This is a utility class that contains utility methods which will facilitates the coding of other methods
 

Enum Summary
CommandPrompt.PropertyName  
PeptideProperties.SingleLetterAACode Enumeration of 20 standard amino acid code
 

Package org.biojava3.aaproperties Description

Set of classes that responsible for providing APIs and Command Prompt access to generate some basic physico-chemical properties of protein sequences.

Since:
3.0.2
Version:
2011.08.22
Author:
Koh Chuan Hock