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java.lang.Objectorg.biojava3.core.sequence.io.IUPACParser
public class IUPACParser
Available translations
IUPACParser.IUPACTable
objects do not parse the data further until
requested so if you do not use a translation table your only penalty is the
loading of the IUPAC data from the classpath.
Nested Class Summary | |
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static class |
IUPACParser.IUPACTable
Holds the concept of a codon table from the IUPAC format |
Field Summary | |
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static String |
IUPAC_LOCATION
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Constructor Summary | |
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IUPACParser()
Default version and uses the classpath based IUPAC table |
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IUPACParser(InputStream is)
Allows you to specify a different IUPAC table. |
Method Summary | |
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static IUPACParser |
getInstance()
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IUPACParser.IUPACTable |
getTable(Integer id)
Returns a table by its identifier i.e. |
IUPACParser.IUPACTable |
getTable(String name)
Returns a table by its name |
List<IUPACParser.IUPACTable> |
getTables()
Returns a list of all available IUPAC tables |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public static final String IUPAC_LOCATION
Constructor Detail |
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public IUPACParser()
public IUPACParser(InputStream is)
Method Detail |
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public static IUPACParser getInstance()
public List<IUPACParser.IUPACTable> getTables()
public IUPACParser.IUPACTable getTable(String name)
public IUPACParser.IUPACTable getTable(Integer id)
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