Overview
Package
Class
Tree
Deprecated
Index
Help
PREV PACKAGE
NEXT PACKAGE
FRAMES
NO FRAMES
All Classes
Package org.forester.surfacing
Interface Summary
BinaryDomainCombination
CombinableDomains
Domain
DomainSimilarity
DomainSimilarityCalculator
GenomeWideCombinableDomains
PairwiseDomainSimilarity
PairwiseDomainSimilarityCalculator
Protein
Species
Class Summary
AdjactantDirectedBinaryDomainCombination
AdjactantDirectedCombinableDomains
BasicBinaryDomainCombination
BasicCombinableDomains
BasicDomain
BasicDomainSimilarityCalculator
BasicGenomeWideCombinableDomains
BasicProtein
BasicSpecies
CombinationsBasedPairwiseDomainSimilarity
CombinationsBasedPairwiseDomainSimilarityCalculator
CountsBasedPairwiseDomainSimilarity
DirectedBinaryDomainCombination
DirectedCombinableDomains
DomainArchitectureBasedGenomeSimilarityCalculator
DomainCountsBasedPairwiseSimilarityCalculator
DomainCountsDifferenceUtil
DomainId
DomainLengths
DomainLengthsTable
DomainParsimonyCalculator
MappingResults
PairwiseGenomeComparator
PrintableDomainSimilarity
ProteinCountsBasedPairwiseDomainSimilarityCalculator
ProteinId
SimpleDomain
SurfacingConstants
SurfacingUtil
TestSurfacing
Enum Summary
BinaryDomainCombination.DomainCombinationType
BinaryDomainCombination.OutputFormat
DomainCountsDifferenceUtil.COPY_CALCULATION_MODE
DomainSimilarity.DomainSimilarityScoring
DomainSimilarity.DomainSimilaritySortField
DomainSimilarityCalculator.Detailedness
DomainSimilarityCalculator.GoAnnotationOutput
GenomeWideCombinableDomains.GenomeWideCombinableDomainsSortOrder
PrintableDomainSimilarity.PRINT_OPTION
Overview
Package
Class
Tree
Deprecated
Index
Help
PREV PACKAGE
NEXT PACKAGE
FRAMES
NO FRAMES
All Classes