org.biojava3.ws.alignment.qblast
Enum BlastAlignmentParameterEnum
java.lang.Object
java.lang.Enum<BlastAlignmentParameterEnum>
org.biojava3.ws.alignment.qblast.BlastAlignmentParameterEnum
- All Implemented Interfaces:
- Serializable, Comparable<BlastAlignmentParameterEnum>
public enum BlastAlignmentParameterEnum
- extends Enum<BlastAlignmentParameterEnum>
Alignment request parameters accepted by QBlast service.
Not all are mandatory. Certain parameters only work with a subset of other parameters in the list.
Taken from Blast URL API
- Author:
- Gediminas Rimsa
CMD
public static final BlastAlignmentParameterEnum CMD
TOOL
public static final BlastAlignmentParameterEnum TOOL
EMAIL
public static final BlastAlignmentParameterEnum EMAIL
ALIGNMENTS
public static final BlastAlignmentParameterEnum ALIGNMENTS
BLAST_PROGRAM
public static final BlastAlignmentParameterEnum BLAST_PROGRAM
CDD_SEARCH
public static final BlastAlignmentParameterEnum CDD_SEARCH
COMPOSITION_BASED_STATISTICS
public static final BlastAlignmentParameterEnum COMPOSITION_BASED_STATISTICS
DATABASE_PREFIX
public static final BlastAlignmentParameterEnum DATABASE_PREFIX
DATABASE
public static final BlastAlignmentParameterEnum DATABASE
DB_GENETIC_CODE
public static final BlastAlignmentParameterEnum DB_GENETIC_CODE
DESCRIPTIONS
public static final BlastAlignmentParameterEnum DESCRIPTIONS
ENTREZ_QUERY
public static final BlastAlignmentParameterEnum ENTREZ_QUERY
EXPECT
public static final BlastAlignmentParameterEnum EXPECT
FILTER
public static final BlastAlignmentParameterEnum FILTER
FIRST_QUERY_NUM
public static final BlastAlignmentParameterEnum FIRST_QUERY_NUM
GAPCOSTS
public static final BlastAlignmentParameterEnum GAPCOSTS
GENETIC_CODE
public static final BlastAlignmentParameterEnum GENETIC_CODE
HITLIST_SIZE
public static final BlastAlignmentParameterEnum HITLIST_SIZE
I_THRESH
public static final BlastAlignmentParameterEnum I_THRESH
LCASE_MASK
public static final BlastAlignmentParameterEnum LCASE_MASK
MATCH_SCORES
public static final BlastAlignmentParameterEnum MATCH_SCORES
MATRIX_NAME
public static final BlastAlignmentParameterEnum MATRIX_NAME
MAX_NUM_SEQ
public static final BlastAlignmentParameterEnum MAX_NUM_SEQ
MEGABLAST
public static final BlastAlignmentParameterEnum MEGABLAST
NUM_OVERVIEW
public static final BlastAlignmentParameterEnum NUM_OVERVIEW
OTHER_ADVANCED
public static final BlastAlignmentParameterEnum OTHER_ADVANCED
PERC_IDENT
public static final BlastAlignmentParameterEnum PERC_IDENT
PHI_PATTERN
public static final BlastAlignmentParameterEnum PHI_PATTERN
PROGRAM
public static final BlastAlignmentParameterEnum PROGRAM
PSSM
public static final BlastAlignmentParameterEnum PSSM
QUERY
public static final BlastAlignmentParameterEnum QUERY
QUERY_BELIEVE_DEFLINE
public static final BlastAlignmentParameterEnum QUERY_BELIEVE_DEFLINE
QUERY_FROM
public static final BlastAlignmentParameterEnum QUERY_FROM
QUERY_TO
public static final BlastAlignmentParameterEnum QUERY_TO
REPEATS
public static final BlastAlignmentParameterEnum REPEATS
SHORT_QUERY_ADJUST
public static final BlastAlignmentParameterEnum SHORT_QUERY_ADJUST
SEARCHSP_EFF
public static final BlastAlignmentParameterEnum SEARCHSP_EFF
TEMPLATE_LENTH
public static final BlastAlignmentParameterEnum TEMPLATE_LENTH
TEMPLATE_TYPE
public static final BlastAlignmentParameterEnum TEMPLATE_TYPE
THRESHOLD
public static final BlastAlignmentParameterEnum THRESHOLD
TWO_HITS
public static final BlastAlignmentParameterEnum TWO_HITS
WORD_SIZE
public static final BlastAlignmentParameterEnum WORD_SIZE
WWW_BLAST_TYPE
public static final BlastAlignmentParameterEnum WWW_BLAST_TYPE
values
public static BlastAlignmentParameterEnum[] values()
- Returns an array containing the constants of this enum type, in
the order they are declared. This method may be used to iterate
over the constants as follows:
for (BlastAlignmentParameterEnum c : BlastAlignmentParameterEnum.values())
System.out.println(c);
- Returns:
- an array containing the constants of this enum type, in
the order they are declared
valueOf
public static BlastAlignmentParameterEnum valueOf(String name)
- Returns the enum constant of this type with the specified name.
The string must match exactly an identifier used to declare an
enum constant in this type. (Extraneous whitespace characters are
not permitted.)
- Parameters:
name
- the name of the enum constant to be returned.
- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum type has no constant
with the specified name
NullPointerException
- if the argument is null