|
|||||||||
PREV PACKAGE NEXT PACKAGE | FRAMES NO FRAMES |
Class Summary | |
---|---|
FuzzyPoint | Implementation for resolving fuzzy locations. |
InsdcLocations | A collection of locations which are used whenever we work with INSDC; some of which could be deprecated (from INSDC's point of view) yet appear in records. |
InsdcLocations.BondLocation | Used to represent bond locations equivalent to bond(7,8) or bond(7). |
InsdcLocations.GroupLocation | Deprecated in INSDC yet still appears; equivalent to the order() directive except no 5' to 3' ordering is defined. |
InsdcLocations.OneOfLocation | Deprecated in INSDC; refers to a set of locations of which one location could be valid e.g. |
InsdcLocations.OrderLocation | Used to describe a 5' to 3' ordering but no firm assurance it is correct |
InsdcParser | Parser for working with INSDC style locations. |
LocationHelper | Helper methods for use with the Location classes. |
SequenceLocation<S extends AbstractSequence<C>,C extends Compound> | A location in a sequence that keeps a reference to its parent sequence |
SimpleLocation | Very basic implementation of the Location interface which defines a series of simple constructors. |
SimplePoint | Basic implementation of the Point interface. |
|
|||||||||
PREV PACKAGE NEXT PACKAGE | FRAMES NO FRAMES |