org.biojava3.alignment.routines
Enum AlignerHelper.Last

java.lang.Object
  extended by java.lang.Enum<AlignerHelper.Last>
      extended by org.biojava3.alignment.routines.AlignerHelper.Last
All Implemented Interfaces:
Serializable, Comparable<AlignerHelper.Last>
Enclosing class:
AlignerHelper

public static enum AlignerHelper.Last
extends Enum<AlignerHelper.Last>

Defines a traceback pointer for the three edit operations: substitution (match/replacement of a query compound with a target compound), deletion (removal of a query compound leaving a gap in the target sequence), and insertion (addition of a target compound opening a gap in the query sequence).


Enum Constant Summary
DELETION
           
INSERTION
           
SUBSTITUTION
           
 
Method Summary
static AlignerHelper.Last valueOf(String name)
          Returns the enum constant of this type with the specified name.
static AlignerHelper.Last[] values()
          Returns an array containing the constants of this enum type, in the order they are declared.
 
Methods inherited from class java.lang.Enum
clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf
 
Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait
 

Enum Constant Detail

SUBSTITUTION

public static final AlignerHelper.Last SUBSTITUTION

DELETION

public static final AlignerHelper.Last DELETION

INSERTION

public static final AlignerHelper.Last INSERTION
Method Detail

values

public static AlignerHelper.Last[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
for (AlignerHelper.Last c : AlignerHelper.Last.values())
    System.out.println(c);

Returns:
an array containing the constants of this enum type, in the order they are declared

valueOf

public static AlignerHelper.Last valueOf(String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:
name - the name of the enum constant to be returned.
Returns:
the enum constant with the specified name
Throws:
IllegalArgumentException - if this enum type has no constant with the specified name
NullPointerException - if the argument is null