org.forester.surfacing
Class DomainLengthsTable

java.lang.Object
  extended by org.forester.surfacing.DomainLengthsTable

public class DomainLengthsTable
extends Object


Constructor Summary
DomainLengthsTable()
           
 
Method Summary
 void addLengths(List<Protein> protein_list)
           
 DescriptiveStatistics calculateMeanBasedStatisticsForAllSpecies()
           
 DescriptiveStatistics calculateMeanBasedStatisticsForDomain(DomainId domain_id)
           
 DescriptiveStatistics calculateMeanBasedStatisticsForSpecies(Species species)
           
 StringBuilder createMeanBasedStatisticsPerSpeciesTable()
           
 DomainLengths getDomainLengths(DomainId domain_id)
           
 List<DomainLengths> getDomainLengthsList()
           
 DescriptiveStatistics getLengthStatistic(DomainId domain_id, Species species)
           
 List<Species> getSpecies()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

DomainLengthsTable

public DomainLengthsTable()
Method Detail

addLengths

public void addLengths(List<Protein> protein_list)

calculateMeanBasedStatisticsForAllSpecies

public DescriptiveStatistics calculateMeanBasedStatisticsForAllSpecies()

calculateMeanBasedStatisticsForDomain

public DescriptiveStatistics calculateMeanBasedStatisticsForDomain(DomainId domain_id)

calculateMeanBasedStatisticsForSpecies

public DescriptiveStatistics calculateMeanBasedStatisticsForSpecies(Species species)

createMeanBasedStatisticsPerSpeciesTable

public StringBuilder createMeanBasedStatisticsPerSpeciesTable()

getDomainLengths

public DomainLengths getDomainLengths(DomainId domain_id)

getDomainLengthsList

public List<DomainLengths> getDomainLengthsList()

getLengthStatistic

public DescriptiveStatistics getLengthStatistic(DomainId domain_id,
                                                Species species)

getSpecies

public List<Species> getSpecies()