public class AGAVEContigHandler extends StAXFeatureHandler implements AGAVEContigCallbackItf, SequenceHandler
Modifier and Type | Field and Description |
---|---|
static StAXHandlerFactory |
AGAVE_CONTIG_HANDLER_FACTORY |
protected Sequence |
sequence |
annot, callbackStack, endLoc, featureListener, featureTemplate, myLocalName, stackLevel, startLoc, staxenv, subFeatures
Modifier and Type | Method and Description |
---|---|
void |
endElementHandler(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
StAXContentHandler handler)
Element specific exit handler
Subclass to do anything useful.
|
void |
reportDna(java.lang.String dna) |
void |
reportSequence(Sequence sequence) |
void |
startElementHandler(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs)
Element-specific handler.
|
addFeatureToSequence, addHandler, createTemplate, endElement, getFeatureListener, getHandlerStackIterator, getLevel, pop, push, realizeSubFeatures, setFeatureListener, setHandlerCharacteristics, setProperty, startElement
characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree
public static final StAXHandlerFactory AGAVE_CONTIG_HANDLER_FACTORY
protected Sequence sequence
public void reportSequence(Sequence sequence)
reportSequence
in interface AGAVEContigCallbackItf
public void reportDna(java.lang.String dna)
reportDna
in interface AGAVEContigCallbackItf
public void startElementHandler(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, org.xml.sax.Attributes attrs) throws org.xml.sax.SAXException
StAXFeatureHandler
startElementHandler
in class StAXFeatureHandler
org.xml.sax.SAXException
public void endElementHandler(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, StAXContentHandler handler) throws org.xml.sax.SAXException
StAXFeatureHandler
endElementHandler
in class StAXFeatureHandler
org.xml.sax.SAXException