Package | Description |
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org.biojava.bio.program.fastq |
FASTQ and variants sequence format IO.
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Modifier and Type | Method and Description |
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Fastq |
FastqBuilder.build()
Build and return a new FASTQ formatted sequence configured from the properties of this builder.
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Modifier and Type | Method and Description |
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java.lang.Iterable<Fastq> |
FastqReader.read(java.io.File file)
Read zero or more FASTQ formatted sequences from the specified file.
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java.lang.Iterable<Fastq> |
FastqReader.read(java.io.InputStream inputStream)
Read zero or more FASTQ formatted sequences from the specified input stream.
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java.lang.Iterable<Fastq> |
FastqReader.read(java.net.URL url)
Read zero or more FASTQ formatted sequences from the specified url.
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Modifier and Type | Method and Description |
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<T extends java.lang.Appendable> |
FastqWriter.append(T appendable,
Fastq... fastq)
Append the specified FASTQ formatted sequences to the specified appendable.
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protected void |
SolexaFastqWriter.validate(Fastq fastq)
Validate the specified FASTQ formatted sequence for writing.
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protected void |
IlluminaFastqWriter.validate(Fastq fastq)
Validate the specified FASTQ formatted sequence for writing.
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protected void |
SangerFastqWriter.validate(Fastq fastq)
Validate the specified FASTQ formatted sequence for writing.
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void |
FastqWriter.write(java.io.File file,
Fastq... fastq)
Write the specified FASTQ formatted sequences to the specified file.
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void |
FastqWriter.write(java.io.OutputStream outputStream,
Fastq... fastq)
Write the specified FASTQ formatted sequences to the specified output stream.
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Modifier and Type | Method and Description |
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<T extends java.lang.Appendable> |
FastqWriter.append(T appendable,
java.lang.Iterable<Fastq> fastq)
Append the specified FASTQ formatted sequences to the specified appendable.
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void |
FastqWriter.write(java.io.File file,
java.lang.Iterable<Fastq> fastq)
Write the specified FASTQ formatted sequences to the specified file.
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void |
FastqWriter.write(java.io.OutputStream outputStream,
java.lang.Iterable<Fastq> fastq)
Write the specified FASTQ formatted sequences to the specified output stream.
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