Package | Description |
---|---|
org.biojava.bio.structure.gui |
A few convenience classes to view protein structures with Jmol (if it is on the classpath),
to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm.
|
org.biojava.bio.structure.gui.events |
Some event classes for the protein structure GUIs.
|
org.biojava.bio.structure.gui.util |
Some utility classes for the protein structure GUIs.
|
Modifier and Type | Method and Description |
---|---|
java.util.List<AlignedPosition> |
SequenceDisplay.getAligMap() |
Modifier and Type | Method and Description |
---|---|
void |
JmolAlignedPositionListener.mouseOverPosition(AlignedPosition p) |
void |
AlignmentPositionListener.mouseOverPosition(AlignedPosition p) |
void |
JmolAlignedPositionListener.positionSelected(AlignedPosition p) |
void |
AlignmentPositionListener.positionSelected(AlignedPosition p) |
void |
JmolAlignedPositionListener.rangeSelected(AlignedPosition start,
AlignedPosition end) |
void |
AlignmentPositionListener.rangeSelected(AlignedPosition start,
AlignedPosition end) |
Modifier and Type | Method and Description |
---|---|
void |
SequenceScalePanel.setAligMap(java.util.List<AlignedPosition> apos) |