public interface HomologeneBuilder
Modifier and Type | Field and Description |
---|---|
static java.lang.String |
ACCESSION |
static java.lang.String |
CURATED |
static java.lang.String |
HOMOID |
static java.lang.String |
LOCUSID |
static java.lang.String |
MULTIPLE |
static java.lang.String |
PERCENTIDENTITY |
static java.lang.String |
REFERENCE |
static java.lang.String |
SIMILARITYTYPE |
static java.lang.String |
TAXONID |
static java.lang.String |
TWIN |
Modifier and Type | Method and Description |
---|---|
void |
addOrthologueProperty(java.lang.String key,
java.lang.String value)
add a property to the current Orthologue
|
void |
addOrthoPairProperty(java.lang.String key,
java.lang.String value)
add a property to the current OrthoPair
|
void |
addTitle(int taxonID,
java.lang.String homologeneID,
java.lang.String title)
add title information to an Orthologue
(this is not in enclosed in the Orthologue element
because it comes completely separate in the Homologene
data files.
|
void |
endDB()
end of data for DB
|
void |
endGroup()
end of data for group
|
void |
endOrthologue()
end of data for this Orthologue
|
void |
endOrthoPair()
end of data for this OrthoPair
|
HomologeneDB |
getDB()
retrieve the DB that has just been built
|
void |
startDB()
indicates start of data for a HomologeneDB
|
void |
startGroup()
indicates start of data for a OrthoPairSet
|
void |
startOrthologue()
indicates start of data for an orthologue
|
void |
startOrthoPair()
indicates start of data for an OrthoPair
|
static final java.lang.String TAXONID
static final java.lang.String LOCUSID
static final java.lang.String HOMOID
static final java.lang.String ACCESSION
static final java.lang.String SIMILARITYTYPE
static final java.lang.String PERCENTIDENTITY
static final java.lang.String REFERENCE
static final java.lang.String TWIN
static final java.lang.String MULTIPLE
static final java.lang.String CURATED
void startDB()
void startGroup()
void startOrthoPair()
void startOrthologue()
void addOrthologueProperty(java.lang.String key, java.lang.String value)
void endOrthologue()
void addOrthoPairProperty(java.lang.String key, java.lang.String value)
void endOrthoPair()
void addTitle(int taxonID, java.lang.String homologeneID, java.lang.String title)
void endGroup()
void endDB()
HomologeneDB getDB()