Package | Description |
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org.biojava.bio.structure.align.pairwise |
Classes for the pairwise alignment of structures.
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Modifier and Type | Method and Description |
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JointFragments[] |
FragmentJoiner.approach_ap3(Atom[] ca1,
Atom[] ca2,
FragmentPair[] fraglst,
StrucAligParameters params) |
JointFragments[] |
FragmentJoiner.frag_pairwise_compat(FragmentPair[] fraglst,
int angleDiff,
float fragCompatDist,
int maxRefine)
Calculate the pairwise compatibility of fpairs.
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Modifier and Type | Method and Description |
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void |
AlternativeAlignment.apairs_from_idxlst(JointFragments jf)
Set apairs according to a list of (i,j) tuples.
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static double |
FragmentJoiner.getRMS(Atom[] ca1,
Atom[] ca2,
JointFragments frag)
get the RMS of the JointFragments pair frag
|