public class AlphabetResolver
extends java.lang.Object
AlphabetResolver
s are helpers which determine which
type of sequence Alphabet
to expect from a search
result. Now public to allow use by anyone making custom handlers.Constructor and Description |
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AlphabetResolver() |
Modifier and Type | Method and Description |
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static FiniteAlphabet |
resolveAlphabet(java.lang.String identifier)
resolveAlphabet returns an appropriate
Alphabet for an arbitrary identifier. |
public static FiniteAlphabet resolveAlphabet(java.lang.String identifier) throws BioException
resolveAlphabet
returns an appropriate
Alphabet
for an arbitrary identifier. The protein
alphabet returned will include the termination character as
e.g. BLASTX 6-frame translations are likely to include stops.identifier
- a String
identifier (recognised
are BLASTN, BLASTP, BLASTX, TBLASTN, TBLASTX, DNA and PROTEIN).FiniteAlphabet
.BioException
- if the identifier is not known.