Package | Description |
---|---|
org.biojava.ontology |
A general-purpose API for ontologies.
|
org.biojavax.ontology |
Extensions to the biojava ontology model that represent BioSQL ontology.
|
Modifier and Type | Method and Description |
---|---|
OntologyTerm |
Ontology.Impl.createOntologyTerm(Ontology o) |
Term |
Ontology.createTerm(java.lang.String name)
Create a new term in this ontology.
|
Term |
Ontology.Impl.createTerm(java.lang.String name) |
Term |
IntegerOntology.createTerm(java.lang.String name) |
Term |
Ontology.createTerm(java.lang.String name,
java.lang.String description)
Create a new term in this ontology.
|
Term |
Ontology.Impl.createTerm(java.lang.String name,
java.lang.String description) |
Term |
IntegerOntology.createTerm(java.lang.String name,
java.lang.String description) |
Term |
Ontology.createTerm(java.lang.String name,
java.lang.String description,
java.lang.Object[] synonyms)
Create a new term in this ontology.
|
Term |
Ontology.Impl.createTerm(java.lang.String name,
java.lang.String description,
java.lang.Object[] synonyms) |
Term |
IntegerOntology.createTerm(java.lang.String name,
java.lang.String description,
java.lang.Object[] synonyms) |
Triple |
Ontology.createTriple(Term subject,
Term object,
Term predicate,
java.lang.String name,
java.lang.String description)
Creates a new Triple.
|
Triple |
Ontology.Impl.createTriple(Term subject,
Term object,
Term predicate,
java.lang.String name,
java.lang.String description) |
Triple |
IntegerOntology.createTriple(Term subject,
Term object,
Term predicate,
java.lang.String name,
java.lang.String description) |
Variable |
Ontology.createVariable(java.lang.String name,
java.lang.String description)
Create a new term in this ontology that is used as a variable.
|
Variable |
Ontology.Impl.createVariable(java.lang.String name,
java.lang.String description) |
Variable |
IntegerOntology.createVariable(java.lang.String name,
java.lang.String description) |
Modifier and Type | Method and Description |
---|---|
void |
ComparableTriple.addDescriptor(ComparableTerm desc)
Adds a descriptor.
|
Term |
SimpleComparableOntology.createTerm(java.lang.String name)
Create a new term in this ontology.
|
Term |
SimpleComparableOntology.createTerm(java.lang.String name,
java.lang.String description)
Create a new term in this ontology.
|
Term |
SimpleComparableOntology.createTerm(java.lang.String name,
java.lang.String description,
java.lang.Object[] synonyms)
Create a new term in this ontology.
|
Triple |
SimpleComparableOntology.createTriple(Term subject,
Term object,
Term predicate,
java.lang.String name,
java.lang.String description)
Creates a new Triple.
|
Variable |
SimpleComparableOntology.createVariable(java.lang.String name,
java.lang.String description)
Create a new term in this ontology that is used as a variable.
|