public class XFFTools
extends java.lang.Object
Modifier and Type | Field and Description |
---|---|
static java.lang.String |
XFF_BIOJAVA_NS |
static java.lang.String |
XFF_NS |
Constructor and Description |
---|
XFFTools() |
Modifier and Type | Method and Description |
---|---|
static void |
annotateXFF(java.io.File xffFile,
Sequence sequence) |
static void |
annotateXFF(java.io.File xffFile,
Sequence sequence,
Annotation ann) |
static Sequence |
readXFF(java.io.File xffFile,
java.lang.String seqID) |
static Sequence |
readXFF(java.io.File xffFile,
java.lang.String seqID,
FiniteAlphabet alpha) |
static void |
writeXFF(java.io.File xffFile,
FeatureHolder features) |
static void |
writeXFF(java.io.PrintWriter xffPR,
FeatureHolder features) |
public static final java.lang.String XFF_NS
public static final java.lang.String XFF_BIOJAVA_NS
public static void annotateXFF(java.io.File xffFile, Sequence sequence) throws java.io.IOException, org.xml.sax.SAXException, BioException
java.io.IOException
org.xml.sax.SAXException
BioException
public static void annotateXFF(java.io.File xffFile, Sequence sequence, Annotation ann) throws java.io.IOException, org.xml.sax.SAXException, BioException
java.io.IOException
org.xml.sax.SAXException
BioException
public static Sequence readXFF(java.io.File xffFile, java.lang.String seqID, FiniteAlphabet alpha) throws java.io.IOException, org.xml.sax.SAXException, BioException
java.io.IOException
org.xml.sax.SAXException
BioException
public static Sequence readXFF(java.io.File xffFile, java.lang.String seqID) throws java.io.IOException, org.xml.sax.SAXException, BioException
java.io.IOException
org.xml.sax.SAXException
BioException
public static void writeXFF(java.io.File xffFile, FeatureHolder features) throws java.io.IOException
java.io.IOException
public static void writeXFF(java.io.PrintWriter xffPR, FeatureHolder features) throws java.io.IOException
java.io.IOException