See: Description
Class | Description |
---|---|
AlignmentGui |
A JFrame that allows to trigger a pairwise structure alignment,
either from files in a directory,
or after manual upload.
|
BiojavaJmol |
A class that provides a simple GUI for Jmol
|
JMatrixPanel |
a JPanel that can display a difference of distance matrix and paths that have been
taken for the alignment
|
RasmolCommandListener |
a utility class that listens to Ramsol script commands in the @link
BiojavaJmol class |
ScaleableMatrixPanel |
A JPanel that can display the underlying distance matrix
data of the protein structure alignment algorithm.
|
SequenceDisplay |
A sequence display that can show the results of a protein structure alignment.
|
A few convenience classes to view protein structures with Jmol (if it is on the classpath), to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm. Possible start classes are BiojavaJmol, AlignmentGui.