Package | Description |
---|---|
org.biojava.bio.seq |
Classes and interfaces for defining biological sequences and informatics
objects.
|
org.biojava.bio.seq.impl |
Standard in-memory implementations of
Sequence and
Feature . |
Modifier and Type | Method and Description |
---|---|
static GappedSequence |
DNATools.createGappedDNASequence(java.lang.String dna,
java.lang.String name)
Get a new dna as a GappedSequence
|
static GappedSequence |
ProteinTools.createGappedProteinSequence(java.lang.String theProtein,
java.lang.String name)
Get a new protein as a GappedSequence
|
static GappedSequence |
SequenceTools.gappedView(Sequence seq)
Create a new gapped sequence for a sequence.
|
Modifier and Type | Class and Description |
---|---|
class |
SimpleGappedSequence
Simple implementation of GappedSequence.
|
Constructor and Description |
---|
SimpleGappedSequence(GappedSequence seq) |