Package | Description |
---|---|
org.biojava.bio.structure.io.mmcif |
Input and Output of mmcif files
|
org.biojava.bio.structure.io.mmcif.chem |
Modifier and Type | Method and Description |
---|---|
ChemComp |
ChemicalComponentDictionary.getParent(ChemComp c)
Get the parent of a component.
|
ChemComp |
ChemicalComponentDictionary.getReplaced(ChemComp c)
if ChemComp is replacing another one, get the old version
otherwise return the same ChemComp again.
|
ChemComp |
ChemicalComponentDictionary.getReplaced(java.lang.String id) |
ChemComp |
ChemicalComponentDictionary.getReplacer(ChemComp c)
if ChemComp is replaced by another one, get the newer version
otherwise return the same ChemComp again.
|
ChemComp |
ChemicalComponentDictionary.getReplacer(java.lang.String id) |
Modifier and Type | Method and Description |
---|---|
void |
ChemicalComponentDictionary.addChemComp(ChemComp comp)
add a new component to the dictionary
|
ChemComp |
ChemicalComponentDictionary.getParent(ChemComp c)
Get the parent of a component.
|
ChemComp |
ChemicalComponentDictionary.getReplaced(ChemComp c)
if ChemComp is replacing another one, get the old version
otherwise return the same ChemComp again.
|
ChemComp |
ChemicalComponentDictionary.getReplacer(ChemComp c)
if ChemComp is replaced by another one, get the newer version
otherwise return the same ChemComp again.
|
boolean |
ChemicalComponentDictionary.isReplaced(ChemComp c) |
boolean |
ChemicalComponentDictionary.isReplacer(ChemComp c) |
void |
MMcifConsumer.newChemComp(ChemComp c) |
void |
ChemCompConsumer.newChemComp(ChemComp c) |
void |
SimpleMMcifConsumer.newChemComp(ChemComp c) |
void |
SimpleMMcifParser.triggerNewChemComp(ChemComp cc) |
Modifier and Type | Method and Description |
---|---|
static java.lang.Character |
ChemCompTools.getOneLetterCode(ChemComp cc,
ChemicalComponentDictionary dictionary) |
static boolean |
ChemCompTools.isStandardChemComp(ChemComp cc) |