Package | Description |
---|---|
org.biojava.bio.chromatogram |
Interfaces and classes for chromatogram data, as produced by DNA sequencing equipment.
|
org.biojava.bio.program.abi |
ABI Trace Handling.
|
org.biojava.bio.program.scf |
Support for the SCF chromatogram format.
|
Modifier and Type | Method and Description |
---|---|
static Chromatogram |
ChromatogramFactory.create(java.io.File f)
Creates a new
Chromatogram object from the named file. |
static Chromatogram |
ChromatogramFactory.create(java.io.InputStream in)
Creates a new
Chromatogram object from the supplied stream. |
Modifier and Type | Method and Description |
---|---|
static ABIFChromatogram |
ABIFChromatogram.create(java.io.File f)
Create a new ABIF object from a file.
|
static ABIFChromatogram |
ABIFChromatogram.create(java.io.InputStream in)
Create a new ABIF object from a stream of bytes.
|
protected ABIFChromatogram |
ABIFChromatogram.load(java.io.File f) |
protected ABIFChromatogram |
ABIFChromatogram.load(java.io.InputStream in) |
Constructor and Description |
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Parser(java.io.File f) |
Parser(java.io.InputStream in) |
Modifier and Type | Method and Description |
---|---|
static SCF |
SCF.create(java.io.File f) |
static SCF |
SCF.create(java.io.InputStream in,
long alreadyRead) |
protected void |
SCF.load(java.io.File f) |
protected void |
SCF.load(java.io.InputStream in,
long initOffset) |