public class DASAlignmentCall
extends java.lang.Object
Constructor and Description |
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DASAlignmentCall()
Constructs a DASAlignmentCall object.
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DASAlignmentCall(java.lang.String url)
Constructs a DASAlignmentCall object.
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Modifier and Type | Method and Description |
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Alignment[] |
getAlignments()
connect to a DAS alignment service and retreive alignments.
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Alignment[] |
getAlignments(java.lang.String query)
connect to a DAS alignment service and retreive data.
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java.lang.String |
getServerurl()
get url of alignment service.
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Alignment[] |
parseDASResponse(java.io.InputStream inStream)
parse the Response of a DAS ALignment service and return a
biojava Alignment object.
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void |
setServerurl(java.lang.String s)
set url of aligmnent service.
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public DASAlignmentCall()
public DASAlignmentCall(java.lang.String url)
url
- a String ...public void setServerurl(java.lang.String s)
s
- a String specifying the serverurl valuegetServerurl()
public java.lang.String getServerurl()
setServerurl(java.lang.String)
public Alignment[] getAlignments() throws java.io.IOException
java.io.IOException
- ...public Alignment[] getAlignments(java.lang.String query) throws java.io.IOException
query
- a Stringjava.io.IOException
- ...public Alignment[] parseDASResponse(java.io.InputStream inStream) throws java.io.IOException, org.xml.sax.SAXException
java.io.IOException
org.xml.sax.SAXException