public class SQLUnigeneFactory extends java.lang.Object implements UnigeneFactory
An implementatoin of UnigeneFactory that manages it's data in an SQL database.
This class is for developers and power-users. Usually you will not use this class directly, but rather use UnigeneTools.loadDatabase() with a jdbc URL.
This class will store unigene data in a relational database with a schema defined by the resource src/org/biojava/bio/program/unigene/createUnigene.sql and currently only realy supports mysql. To import data to a newly created database, repeatedly call addCluster() on the UnigeneDB you get back.
Constructor and Description |
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SQLUnigeneFactory() |
Modifier and Type | Method and Description |
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boolean |
canAccept(java.net.URL dbURL)
Accepts all URLs that are of the jdbc protocol.
|
UnigeneDB |
createUnigene(java.net.URL dbURL) |
UnigeneDB |
loadUnigene(java.net.URL dbURL) |
public boolean canAccept(java.net.URL dbURL)
canAccept
in interface UnigeneFactory
public UnigeneDB loadUnigene(java.net.URL dbURL) throws BioException
loadUnigene
in interface UnigeneFactory
BioException
public UnigeneDB createUnigene(java.net.URL dbURL) throws BioException
createUnigene
in interface UnigeneFactory
BioException