public class Compound
extends java.lang.Object
implements java.lang.Cloneable
Constructor and Description |
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Compound() |
Modifier and Type | Method and Description |
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void |
addChain(Chain chain) |
Compound |
clone() |
java.lang.String |
getAtcc() |
java.lang.String |
getBiologicalUnit() |
java.lang.String |
getCell() |
java.lang.String |
getCellLine() |
java.lang.String |
getCellularLocation() |
java.util.List<java.lang.String> |
getChainId()
Returns the chain id value.
|
java.util.List<Chain> |
getChains()
get the chains that are part of this Compound
|
java.lang.String |
getDetails() |
java.util.List<java.lang.String> |
getEcNums() |
java.lang.String |
getEngineered() |
java.lang.String |
getExpressionSystem() |
java.lang.String |
getExpressionSystemAtccNumber() |
java.lang.String |
getExpressionSystemCell() |
java.lang.String |
getExpressionSystemCellLine() |
java.lang.String |
getExpressionSystemCellularLocation() |
java.lang.String |
getExpressionSystemGene() |
java.lang.String |
getExpressionSystemOrgan() |
java.lang.String |
getExpressionSystemOrganelle() |
java.lang.String |
getExpressionSystemOtherDetails() |
java.lang.String |
getExpressionSystemPlasmid() |
java.lang.String |
getExpressionSystemStrain() |
java.lang.String |
getExpressionSystemTaxId() |
java.lang.String |
getExpressionSystemTissue() |
java.lang.String |
getExpressionSystemVariant() |
java.lang.String |
getExpressionSystemVector() |
java.lang.String |
getExpressionSystemVectorType() |
java.lang.String |
getFragment() |
java.lang.String |
getGene() |
java.lang.String |
getHeaderVars() |
java.lang.Long |
getId()
get the ID used by Hibernate
|
java.lang.String |
getMolId()
Returns the mol id value.
|
java.lang.String |
getMolName() |
java.lang.String |
getMutation() |
java.lang.String |
getNumRes() |
java.lang.String |
getOrgan() |
java.lang.String |
getOrganelle() |
java.lang.String |
getOrganismCommon() |
java.lang.String |
getOrganismScientific() |
java.lang.String |
getOrganismTaxId() |
java.lang.String |
getRefChainId()
Returns the ref chain id value.
|
java.lang.String |
getResNames() |
java.lang.String |
getSecretion() |
java.lang.String |
getStrain() |
java.util.List<java.lang.String> |
getSynonyms() |
java.lang.String |
getSynthetic() |
java.lang.String |
getTissue() |
java.lang.String |
getTitle() |
java.lang.String |
getVariant() |
void |
setAtcc(java.lang.String atcc) |
void |
setBiologicalUnit(java.lang.String biologicalUnit) |
void |
setCell(java.lang.String cell) |
void |
setCellLine(java.lang.String cellLine) |
void |
setCellularLocation(java.lang.String cellularLocation) |
void |
setChainId(java.util.List<java.lang.String> chainId)
Sets the list of chain IDs.
|
void |
setChains(java.util.List<Chain> chains) |
void |
setDetails(java.lang.String details) |
void |
setEcNums(java.util.List<java.lang.String> ecNums) |
void |
setEngineered(java.lang.String engineered) |
void |
setExpressionSystem(java.lang.String expressionSystem) |
void |
setExpressionSystemAtccNumber(java.lang.String expressionSystemAtccNumber) |
void |
setExpressionSystemCell(java.lang.String expressionSystemCell) |
void |
setExpressionSystemCellLine(java.lang.String expressionSystemCellLine) |
void |
setExpressionSystemCellularLocation(java.lang.String expressionSystemCellularLocation) |
void |
setExpressionSystemGene(java.lang.String expressionSystemGene) |
void |
setExpressionSystemOrgan(java.lang.String expressionSystemOrgan) |
void |
setExpressionSystemOrganelle(java.lang.String expressionSystemOrganelle) |
void |
setExpressionSystemOtherDetails(java.lang.String expressionSystemOtherDetails) |
void |
setExpressionSystemPlasmid(java.lang.String expressionSystemPlasmid) |
void |
setExpressionSystemStrain(java.lang.String expressionSystemStrain) |
void |
setExpressionSystemTaxId(java.lang.String expressionSystemTaxId) |
void |
setExpressionSystemTissue(java.lang.String expressionSystemTissue) |
void |
setExpressionSystemVariant(java.lang.String expressionSystemVariant) |
void |
setExpressionSystemVector(java.lang.String expressionSystemVector) |
void |
setExpressionSystemVectorType(java.lang.String expressionSystemVectorType) |
void |
setFragment(java.lang.String fragment) |
void |
setGene(java.lang.String gene) |
void |
setHeaderVars(java.lang.String headerVars) |
void |
setId(java.lang.Long id)
set the ID used by Hibernate
|
void |
setMolId(java.lang.String molId)
Set the mol id value.
|
void |
setMolName(java.lang.String molName) |
void |
setMutation(java.lang.String mutation) |
void |
setNumRes(java.lang.String numRes) |
void |
setOrgan(java.lang.String organ) |
void |
setOrganelle(java.lang.String organelle) |
void |
setOrganismCommon(java.lang.String organismCommon) |
void |
setOrganismScientific(java.lang.String organismScientific) |
void |
setOrganismTaxId(java.lang.String organismTaxId) |
void |
setRefChainId(java.lang.String refChainId)
Returns the ref chain id value.
|
void |
setResNames(java.lang.String resNames) |
void |
setSecretion(java.lang.String secretion) |
void |
setStrain(java.lang.String strain) |
void |
setSynonyms(java.util.List<java.lang.String> synonyms) |
void |
setSynthetic(java.lang.String synthetic) |
void |
setTissue(java.lang.String tissue) |
void |
setTitle(java.lang.String title) |
void |
setVariant(java.lang.String variant) |
void |
showCompound() |
void |
showHeader()
Print some debug statements to System.out
|
void |
showSource() |
java.lang.String |
toString() |
public java.lang.String toString()
toString
in class java.lang.Object
public java.lang.Long getId()
public void setId(java.lang.Long id)
id
- public void showHeader()
public void showCompound()
public void showSource()
public java.util.List<java.lang.String> getChainId()
setChainId(List)
public void setChainId(java.util.List<java.lang.String> chainId)
chainId
- the list of ChainIDs that are described by this CompoundgetChainId()
public java.lang.String getRefChainId()
setRefChainId(String)
public void setRefChainId(java.lang.String refChainId)
refChainId
- the RefChainIDgetRefChainId()
public java.lang.String getMolId()
setMolId(String)
public void setMolId(java.lang.String molId)
molId
- the MolId valuegetMolId()
public java.lang.String getMolName()
public void setMolName(java.lang.String molName)
public java.lang.String getTitle()
public void setTitle(java.lang.String title)
public java.util.List<java.lang.String> getSynonyms()
public void setSynonyms(java.util.List<java.lang.String> synonyms)
public java.util.List<java.lang.String> getEcNums()
public void setEcNums(java.util.List<java.lang.String> ecNums)
public java.lang.String getEngineered()
public void setEngineered(java.lang.String engineered)
public java.lang.String getMutation()
public void setMutation(java.lang.String mutation)
public java.lang.String getBiologicalUnit()
public void setBiologicalUnit(java.lang.String biologicalUnit)
public java.lang.String getDetails()
public void setDetails(java.lang.String details)
public java.lang.String getNumRes()
public void setNumRes(java.lang.String numRes)
public java.lang.String getResNames()
public void setResNames(java.lang.String resNames)
public java.lang.String getHeaderVars()
public void setHeaderVars(java.lang.String headerVars)
public java.lang.String getSynthetic()
public void setSynthetic(java.lang.String synthetic)
public java.lang.String getFragment()
public void setFragment(java.lang.String fragment)
public java.lang.String getOrganismScientific()
public void setOrganismScientific(java.lang.String organismScientific)
public java.lang.String getOrganismTaxId()
public void setOrganismTaxId(java.lang.String organismTaxId)
public java.lang.String getOrganismCommon()
public void setOrganismCommon(java.lang.String organismCommon)
public java.lang.String getStrain()
public void setStrain(java.lang.String strain)
public java.lang.String getVariant()
public void setVariant(java.lang.String variant)
public java.lang.String getCellLine()
public void setCellLine(java.lang.String cellLine)
public java.lang.String getAtcc()
public void setAtcc(java.lang.String atcc)
public java.lang.String getOrgan()
public void setOrgan(java.lang.String organ)
public java.lang.String getTissue()
public void setTissue(java.lang.String tissue)
public java.lang.String getCell()
public void setCell(java.lang.String cell)
public java.lang.String getOrganelle()
public void setOrganelle(java.lang.String organelle)
public java.lang.String getSecretion()
public void setSecretion(java.lang.String secretion)
public java.lang.String getGene()
public void setGene(java.lang.String gene)
public java.lang.String getCellularLocation()
public void setCellularLocation(java.lang.String cellularLocation)
public java.lang.String getExpressionSystem()
public java.lang.String getExpressionSystemTaxId()
public void setExpressionSystemTaxId(java.lang.String expressionSystemTaxId)
public void setExpressionSystem(java.lang.String expressionSystem)
public java.lang.String getExpressionSystemStrain()
public void setExpressionSystemStrain(java.lang.String expressionSystemStrain)
public java.lang.String getExpressionSystemVariant()
public void setExpressionSystemVariant(java.lang.String expressionSystemVariant)
public java.lang.String getExpressionSystemCellLine()
public void setExpressionSystemCellLine(java.lang.String expressionSystemCellLine)
public java.lang.String getExpressionSystemAtccNumber()
public void setExpressionSystemAtccNumber(java.lang.String expressionSystemAtccNumber)
public java.lang.String getExpressionSystemOrgan()
public void setExpressionSystemOrgan(java.lang.String expressionSystemOrgan)
public java.lang.String getExpressionSystemTissue()
public void setExpressionSystemTissue(java.lang.String expressionSystemTissue)
public java.lang.String getExpressionSystemCell()
public void setExpressionSystemCell(java.lang.String expressionSystemCell)
public java.lang.String getExpressionSystemOrganelle()
public void setExpressionSystemOrganelle(java.lang.String expressionSystemOrganelle)
public java.lang.String getExpressionSystemCellularLocation()
public void setExpressionSystemCellularLocation(java.lang.String expressionSystemCellularLocation)
public java.lang.String getExpressionSystemVectorType()
public void setExpressionSystemVectorType(java.lang.String expressionSystemVectorType)
public java.lang.String getExpressionSystemVector()
public void setExpressionSystemVector(java.lang.String expressionSystemVector)
public java.lang.String getExpressionSystemPlasmid()
public void setExpressionSystemPlasmid(java.lang.String expressionSystemPlasmid)
public java.lang.String getExpressionSystemGene()
public void setExpressionSystemGene(java.lang.String expressionSystemGene)
public java.lang.String getExpressionSystemOtherDetails()
public void setExpressionSystemOtherDetails(java.lang.String expressionSystemOtherDetails)
public Compound clone() throws java.lang.CloneNotSupportedException
clone
in class java.lang.Object
java.lang.CloneNotSupportedException
public java.util.List<Chain> getChains()
public void addChain(Chain chain)
public void setChains(java.util.List<Chain> chains)