Package | Description |
---|---|
org.biojava.bio.structure |
Interfaces and classes for protein structure (PDB).
|
Modifier and Type | Method and Description |
---|---|
Compound |
Compound.clone() |
Compound |
Structure.getCompoundById(java.lang.String molId)
request a particular compound by its id
|
Compound |
StructureImpl.getCompoundById(java.lang.String molId) |
Compound |
Chain.getHeader()
Returns the Header ( a Compound object) for this chain.
|
Compound |
ChainImpl.getHeader()
Returns the Header ( a Compound object) for this chain.
|
Modifier and Type | Method and Description |
---|---|
java.util.List<Compound> |
Structure.getCompounds()
get all the Compounds that are defined in the PDB Header
|
java.util.List<Compound> |
StructureImpl.getCompounds() |
Modifier and Type | Method and Description |
---|---|
void |
Chain.setHeader(Compound molId)
Set the Header from the PDB file.
|
void |
ChainImpl.setHeader(Compound mol)
Set the Header from the PDB file.
|
Modifier and Type | Method and Description |
---|---|
void |
Structure.setCompounds(java.util.List<Compound> molList)
set the compounts
|
void |
StructureImpl.setCompounds(java.util.List<Compound> molList) |