Package | Description |
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org.biojava.bio.structure |
Interfaces and classes for protein structure (PDB).
|
org.biojava.bio.structure.align |
Classes for the super-imposition of structures.
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org.biojava.bio.structure.align.helper |
Helper classes for structural alignment.
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org.biojava.bio.structure.align.pairwise |
Classes for the pairwise alignment of structures.
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org.biojava.bio.structure.gui |
A few convenience classes to view protein structures with Jmol (if it is on the classpath),
to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm.
|
org.biojava.bio.structure.jama |
Matrix package for from JAMA
|
Class and Description |
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Matrix
Jama = Java Matrix class.
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Class and Description |
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Matrix
Jama = Java Matrix class.
|
Class and Description |
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Matrix
Jama = Java Matrix class.
|
Class and Description |
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Matrix
Jama = Java Matrix class.
|
Class and Description |
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Matrix
Jama = Java Matrix class.
|
Class and Description |
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CholeskyDecomposition
Cholesky Decomposition.
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EigenvalueDecomposition
Eigenvalues and eigenvectors of a real matrix.
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LUDecomposition
LU Decomposition.
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Matrix
Jama = Java Matrix class.
|
QRDecomposition
QR Decomposition.
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SingularValueDecomposition
Singular Value Decomposition.
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