public final class SangerFastqWriter
extends java.lang.Object
FastqVariant.FASTQ_SANGER
formatted sequences.Constructor and Description |
---|
SangerFastqWriter() |
Modifier and Type | Method and Description |
---|---|
<T extends java.lang.Appendable> |
append(T appendable,
Fastq... fastq)
Append the specified FASTQ formatted sequences to the specified appendable.
|
<T extends java.lang.Appendable> |
append(T appendable,
java.lang.Iterable<Fastq> fastq)
Append the specified FASTQ formatted sequences to the specified appendable.
|
protected void |
validate(Fastq fastq)
Validate the specified FASTQ formatted sequence for writing.
|
void |
write(java.io.File file,
Fastq... fastq)
Write the specified FASTQ formatted sequences to the specified file.
|
void |
write(java.io.File file,
java.lang.Iterable<Fastq> fastq)
Write the specified FASTQ formatted sequences to the specified file.
|
void |
write(java.io.OutputStream outputStream,
Fastq... fastq)
Write the specified FASTQ formatted sequences to the specified output stream.
|
void |
write(java.io.OutputStream outputStream,
java.lang.Iterable<Fastq> fastq)
Write the specified FASTQ formatted sequences to the specified output stream.
|
protected void validate(Fastq fastq) throws java.io.IOException
fastq
- FASTQ formatted sequence to validate, will not be nulljava.io.IOException
- if the specified FASTQ formatted sequence is not valid for writingpublic final <T extends java.lang.Appendable> T append(T appendable, Fastq... fastq) throws java.io.IOException
append
in interface FastqWriter
T
- extends Appendableappendable
- appendable to append the specified FASTQ formatted sequences to, must not be nullfastq
- variable number of FASTQ formatted sequences to append, must not be nulljava.io.IOException
- if an IO error occurspublic final <T extends java.lang.Appendable> T append(T appendable, java.lang.Iterable<Fastq> fastq) throws java.io.IOException
append
in interface FastqWriter
T
- extends Appendableappendable
- appendable to append the specified FASTQ formatted sequences to, must not be nullfastq
- zero or more FASTQ formatted sequences to append, must not be nulljava.io.IOException
- if an IO error occurspublic final void write(java.io.File file, Fastq... fastq) throws java.io.IOException
write
in interface FastqWriter
file
- file to write to, must not be nullfastq
- variable number of FASTQ formatted sequences to write, must not be nulljava.io.IOException
- if an IO error occurspublic final void write(java.io.File file, java.lang.Iterable<Fastq> fastq) throws java.io.IOException
write
in interface FastqWriter
file
- file to write to, must not be nullfastq
- zero or more FASTQ formatted sequences to write, must not be nulljava.io.IOException
- if an IO error occurspublic final void write(java.io.OutputStream outputStream, Fastq... fastq) throws java.io.IOException
write
in interface FastqWriter
outputStream
- output stream to write to, must not be nullfastq
- variable number of FASTQ formatted sequences to write, must not be nulljava.io.IOException
- if an IO error occurspublic final void write(java.io.OutputStream outputStream, java.lang.Iterable<Fastq> fastq) throws java.io.IOException
write
in interface FastqWriter
outputStream
- output stream to write to, must not be nullfastq
- zero or more FASTQ formatted sequences to write, must not be nulljava.io.IOException
- if an IO error occurs