public class SeqSimilarityAdapter
extends java.lang.Object
implements org.xml.sax.ContentHandler
SeqSimilarityAdapter
converts SAX events into method
calls on a SearchContentHandler
implementation. The
SAX events should describe elements conforming to the BioJava
BlastLikeDataSetCollection DTD. A
BlastLikeSearchBuilder
is supplied, implementing the
SearchContentHandler
interface, which will create
SeqSimilaritySearchResult
s from the stream.Constructor and Description |
---|
SeqSimilarityAdapter() |
Modifier and Type | Method and Description |
---|---|
void |
characters(char[] ch,
int start,
int end) |
void |
endDocument() |
void |
endElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName) |
void |
endPrefixMapping(java.lang.String prefix) |
SearchContentHandler |
getSearchContentHandler()
getSearchContentHandler gets the handler which
will recieve the method calls generated by the adapter. |
void |
ignorableWhitespace(char[] ch,
int start,
int end) |
void |
processingInstruction(java.lang.String target,
java.lang.String data) |
void |
setDocumentLocator(org.xml.sax.Locator locator) |
void |
setSearchContentHandler(SearchContentHandler scHandler)
setSearchContentHandler sets the handler which
will recieve the method calls generated by the adapter. |
void |
skippedEntity(java.lang.String name) |
void |
startDocument() |
void |
startElement(java.lang.String nsURI,
java.lang.String localName,
java.lang.String qName,
org.xml.sax.Attributes attrs) |
void |
startPrefixMapping(java.lang.String prefix,
java.lang.String uri) |
public SearchContentHandler getSearchContentHandler()
getSearchContentHandler
gets the handler which
will recieve the method calls generated by the adapter.SearchContentHandler
.public void setSearchContentHandler(SearchContentHandler scHandler)
setSearchContentHandler
sets the handler which
will recieve the method calls generated by the adapter.scHandler
- a SearchContentHandler
.public void startDocument() throws org.xml.sax.SAXException
startDocument
in interface org.xml.sax.ContentHandler
org.xml.sax.SAXException
public void endDocument() throws org.xml.sax.SAXException
endDocument
in interface org.xml.sax.ContentHandler
org.xml.sax.SAXException
public void characters(char[] ch, int start, int end) throws org.xml.sax.SAXException
characters
in interface org.xml.sax.ContentHandler
org.xml.sax.SAXException
public void ignorableWhitespace(char[] ch, int start, int end) throws org.xml.sax.SAXException
ignorableWhitespace
in interface org.xml.sax.ContentHandler
org.xml.sax.SAXException
public void startPrefixMapping(java.lang.String prefix, java.lang.String uri) throws org.xml.sax.SAXException
startPrefixMapping
in interface org.xml.sax.ContentHandler
org.xml.sax.SAXException
public void endPrefixMapping(java.lang.String prefix) throws org.xml.sax.SAXException
endPrefixMapping
in interface org.xml.sax.ContentHandler
org.xml.sax.SAXException
public void processingInstruction(java.lang.String target, java.lang.String data) throws org.xml.sax.SAXException
processingInstruction
in interface org.xml.sax.ContentHandler
org.xml.sax.SAXException
public void setDocumentLocator(org.xml.sax.Locator locator)
setDocumentLocator
in interface org.xml.sax.ContentHandler
public void skippedEntity(java.lang.String name) throws org.xml.sax.SAXException
skippedEntity
in interface org.xml.sax.ContentHandler
org.xml.sax.SAXException
public void startElement(java.lang.String nsURI, java.lang.String localName, java.lang.String qName, org.xml.sax.Attributes attrs) throws org.xml.sax.SAXException
startElement
in interface org.xml.sax.ContentHandler
org.xml.sax.SAXException
public void endElement(java.lang.String nsURI, java.lang.String localName, java.lang.String qName) throws org.xml.sax.SAXException
endElement
in interface org.xml.sax.ContentHandler
org.xml.sax.SAXException