Package | Description |
---|---|
org.biojava.bio.program.das.dasstructure |
request a protein structure via DAS
|
org.biojava.bio.structure |
Interfaces and classes for protein structure (PDB).
|
org.biojava.bio.structure.align |
Classes for the super-imposition of structures.
|
org.biojava.bio.structure.align.helper |
Helper classes for structural alignment.
|
org.biojava.bio.structure.align.pairwise |
Classes for the pairwise alignment of structures.
|
org.biojava.bio.structure.gui |
A few convenience classes to view protein structures with Jmol (if it is on the classpath),
to calculate a protein structure alignment and to investigate the internals of the protein structure alignment algorithm.
|
org.biojava.bio.structure.gui.events |
Some event classes for the protein structure GUIs.
|
org.biojava.bio.structure.gui.util |
Some utility classes for the protein structure GUIs.
|
org.biojava.bio.structure.io |
Input and Output of Structures
|
org.biojava.bio.structure.io.mmcif |
Input and Output of mmcif files
|
org.biojava.bio.structure.server |
classes for easier management of PDB installations
|
Class and Description |
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Structure
Interface for a structure object.
|
Class and Description |
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AminoAcid
A
Group that represents an AminoAcid. |
Atom
A simple interface for an Atom.
|
Author
Describes author attributes for author information in a PDB file.
|
Chain
Defines the interface for a Chain.
|
Compound
Created by IntelliJ IDEA.
|
DBRef
A class to represent database cross references.
|
Group
This is the data structure for a single Group of atoms.
|
HetatomImpl
Generic Implementation of a Group interface.
|
JournalArticle
PDB-specific
|
PDBHeader
A class that contains PDB Header information.
|
PDBRecord
An interface implemented by all classes that represent PDB records
|
SSBond
A simple bean to store disulfid bridge information, the SSBOND records in the PDB files.
|
Structure
Interface for a structure object.
|
StructureException
An exception during the parsing of a PDB file.
|
Class and Description |
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Atom
A simple interface for an Atom.
|
Structure
Interface for a structure object.
|
StructureException
An exception during the parsing of a PDB file.
|
Class and Description |
---|
Atom
A simple interface for an Atom.
|
Class and Description |
---|
Atom
A simple interface for an Atom.
|
Structure
Interface for a structure object.
|
StructureException
An exception during the parsing of a PDB file.
|
Class and Description |
---|
Structure
Interface for a structure object.
|
Class and Description |
---|
Structure
Interface for a structure object.
|
Class and Description |
---|
Chain
Defines the interface for a Chain.
|
Structure
Interface for a structure object.
|
StructureException
An exception during the parsing of a PDB file.
|
Class and Description |
---|
Chain
Defines the interface for a Chain.
|
Group
This is the data structure for a single Group of atoms.
|
Structure
Interface for a structure object.
|
StructureException
An exception during the parsing of a PDB file.
|
Class and Description |
---|
Structure
Interface for a structure object.
|
Class and Description |
---|
PDBHeader
A class that contains PDB Header information.
|
Structure
Interface for a structure object.
|