public interface OrthoPairSet
Modifier and Type | Interface and Description |
---|---|
static interface |
OrthoPairSet.Iterator |
Modifier and Type | Field and Description |
---|---|
static ChangeType |
MODIFY |
Modifier and Type | Method and Description |
---|---|
void |
addOrthoPair(OrthoPair orthology)
adds a specified OrthoPair relationship
to this group.
|
OrthoPairSet |
filter(OrthoPairFilter filter)
filter an OrthoPairSet
|
double |
getMinIdentity()
get the lowest level of identity observed
in this Group
|
java.lang.String |
getName()
retrieves name of this group.
|
java.util.Set |
getTaxa()
get the taxa represented in this group
|
OrthoPairSet.Iterator |
iterator()
returns an iterator to the members of this set
|
void |
removeOrthoPair(OrthoPair orthology)
removes a specified OrthoPair relationship
from this group.
|
void |
setName(java.lang.String name)
set the name of this group.
|
int |
size()
returns an iterator to the contents of the set.
|
static final ChangeType MODIFY
java.lang.String getName()
void setName(java.lang.String name)
void addOrthoPair(OrthoPair orthology) throws ChangeVetoException
ChangeVetoException
void removeOrthoPair(OrthoPair orthology) throws ChangeVetoException
ChangeVetoException
int size()
OrthoPairSet.Iterator iterator()
java.util.Set getTaxa()
double getMinIdentity()
OrthoPairSet filter(OrthoPairFilter filter)