Package beagleutil
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Interface Summary Interface Description IntInterval InterfaceIntInterval
represents an interval of consecutive integers. -
Class Summary Class Description ChromIds ClassChromIds
is a singleton class that represents a list of chromosome identifiers.ChromInterval ClassChromInterval
represents a chromosome interval whose end points are genome coordinates.PbwtUpdater ClassPbwtUpdater
updates prefix and divergence arrays using the positional Burrows-Wheeler transform (PBWT).SampleIds ClassSampleIds
is a singleton class that represents a list of sample identifiers.ThreadSafeIndexer<T> ClassThreadSafeIndexer
indexes objects.