Package vcf

Interface RefGT

  • All Superinterfaces:
    GT
    All Known Implementing Classes:
    BasicRefGT

    public interface RefGT
    extends GT

    Interface RefGT represents phased, compressed, nonmissing genotype data for a list of markers and a list of reference samples.

    All instances of RefGT are required to be immutable.

    • Method Detail

      • get

        RefGTRec get​(int marker)
        Returns the RefGTRec for the specified marker.
        Parameters:
        marker - the marker index
        Returns:
        the RefGTRec for the specified marker
        Throws:
        java.lang.IndexOutOfBoundsException - if marker < 0 || marker >= this.nMarkers()