nipype.interfaces.bru2nii module¶
The bru2nii module provides basic functions for dicom conversion
Bru2¶
Bases: CommandLine
Wrapped executable:
Bru2
.Uses bru2nii’s Bru2 to convert Bruker files
Examples
>>> from nipype.interfaces.bru2nii import Bru2 >>> converter = Bru2() >>> converter.inputs.input_dir = "brukerdir" >>> converter.cmdline 'Bru2 -o .../data/brukerdir brukerdir'
- input_dira pathlike object or string representing an existing directory
Input Directory. Maps to a command-line argument:
%s
(position: -1).
- actual_sizea boolean
Keep actual size - otherwise x10 scale so animals match human. Maps to a command-line argument:
-a
.- append_protocol_namea boolean
Append protocol name to output filename. Maps to a command-line argument:
-p
.- argsa unicode string
Additional parameters to the command. Maps to a command-line argument:
%s
.- compressa boolean
Gz compress images (“.nii.gz”). Maps to a command-line argument:
-z
.- environa dictionary with keys which are a bytes or None or a value of class ‘str’ and with values which are a bytes or None or a value of class ‘str’
Environment variables. (Nipype default value:
{}
)- force_conversiona boolean
Force conversion of localizers images (multiple slice orientations). Maps to a command-line argument:
-f
.- output_filenamea unicode string
Output filename (“.nii” will be appended, or “.nii.gz” if the “-z” compress option is selected). Maps to a command-line argument:
-o %s
.nii_file : a pathlike object or string representing an existing file