NiBabel
Access a cacophony of neuro-imaging file formats
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Neuroimaging in Python
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L
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_
__init__() (nibabel._version.NotThisMethod method)
(nibabel._version.VersioneerConfig method)
(nibabel.brikhead.AFNIArrayProxy method)
(nibabel.brikhead.AFNIHeader method)
(nibabel.brikhead.AFNIHeaderError method)
(nibabel.brikhead.AFNIImage method)
(nibabel.brikhead.AFNIImageError method)
(nibabel.cmdline.dicomfs.DICOMFS method)
(nibabel.cmdline.dicomfs.dummy_fuse method)
(nibabel.cmdline.dicomfs.FileHandle method)
(nibabel.dataobj_images.DataobjImage method)
(nibabel.deprecated.FutureWarningMixin method)
(nibabel.deprecated.ModuleProxy method)
(nibabel.deprecated.VisibleDeprecationWarning method)
(nibabel.deprecator.Deprecator method)
(nibabel.deprecator.ExpiredDeprecationError method)
(nibabel.filebasedimages.FileBasedHeader method)
(nibabel.filebasedimages.FileBasedImage method)
(nibabel.filebasedimages.ImageFileError method)
(nibabel.filebasedimages.SerializableImage method)
(nibabel.mriutils.MRIError method)
(nibabel.viewers.OrthoSlicer3D method)
(nibabel.xmlutils.XmlBasedHeader method)
(nibabel.xmlutils.XmlParser method)
(nibabel.xmlutils.XmlSerializable method)
A
adapt_affine() (in module nibabel.processing)
AFNIArrayProxy (class in nibabel.brikhead)
AFNIHeader (class in nibabel.brikhead)
AFNIHeaderError (class in nibabel.brikhead)
AFNIImage (class in nibabel.brikhead)
AFNIImageError (class in nibabel.brikhead)
ap() (in module nibabel.cmdline.utils)
are_values_different() (in module nibabel.cmdline.diff)
B
bench_array_to_file() (in module nibabel.benchmarks.bench_array_to_file)
bench_arrayproxy_slicing() (in module nibabel.benchmarks.bench_arrayproxy_slicing)
bench_fileslice() (in module nibabel.benchmarks.bench_fileslice)
bench_finite_range() (in module nibabel.benchmarks.bench_finite_range)
bench_load_save() (in module nibabel.benchmarks.bench_load_save)
bench_load_trk() (in module nibabel.benchmarks.bench_streamlines)
C
calculate_dwell_time() (in module nibabel.mriutils)
CharacterDataHandler() (nibabel.xmlutils.XmlParser method)
clim (nibabel.viewers.OrthoSlicer3D property)
close() (nibabel.viewers.OrthoSlicer3D method)
cmap (nibabel.viewers.OrthoSlicer3D property)
conform() (in module nibabel.processing)
copy() (nibabel.brikhead.AFNIHeader method)
(nibabel.filebasedimages.FileBasedHeader method)
count_nonzero_voxels() (in module nibabel.imagestats)
D
dataobj (nibabel.dataobj_images.DataobjImage property)
DataobjImage (class in nibabel.dataobj_images)
Deprecator (class in nibabel.deprecator)
dicom_test() (in module nibabel.pydicom_compat)
DICOMFS (class in nibabel.cmdline.dicomfs)
diff() (in module nibabel.cmdline.diff)
display_diff() (in module nibabel.cmdline.diff)
draw() (nibabel.viewers.OrthoSlicer3D method)
dummy_fuse (class in nibabel.cmdline.dicomfs)
E
EndElementHandler() (nibabel.xmlutils.XmlParser method)
error() (in module nibabel.cmdline.parrec2nii)
ExpiredDeprecationError (class in nibabel.deprecator)
F
figs (nibabel.viewers.OrthoSlicer3D property)
FileBasedHeader (class in nibabel.filebasedimages)
FileBasedImage (class in nibabel.filebasedimages)
FileHandle (class in nibabel.cmdline.dicomfs)
files_types (nibabel.brikhead.AFNIImage attribute)
(nibabel.filebasedimages.FileBasedImage attribute)
filespec_to_file_map() (nibabel.brikhead.AFNIImage class method)
(nibabel.filebasedimages.FileBasedImage class method)
filespec_to_files() (nibabel.filebasedimages.FileBasedImage class method)
from_bytes() (nibabel.filebasedimages.SerializableImage class method)
from_file_map() (nibabel.brikhead.AFNIImage class method)
(nibabel.dataobj_images.DataobjImage class method)
(nibabel.filebasedimages.FileBasedImage class method)
from_filename() (nibabel.dataobj_images.DataobjImage class method)
(nibabel.filebasedimages.FileBasedImage class method)
from_fileobj() (nibabel.brikhead.AFNIHeader class method)
(nibabel.filebasedimages.FileBasedHeader class method)
from_files() (nibabel.filebasedimages.FileBasedImage class method)
from_header() (nibabel.brikhead.AFNIHeader class method)
(nibabel.filebasedimages.FileBasedHeader class method)
from_image() (nibabel.filebasedimages.FileBasedImage class method)
Fuse (nibabel.cmdline.dicomfs.dummy_fuse attribute)
FutureWarningMixin (class in nibabel.deprecated)
fwhm2sigma() (in module nibabel.processing)
G
get_affine() (nibabel.brikhead.AFNIHeader method)
get_config() (in module nibabel._version)
get_data() (nibabel.dataobj_images.DataobjImage method)
get_data_diff() (in module nibabel.cmdline.diff)
get_data_hash_diff() (in module nibabel.cmdline.diff)
get_data_offset() (nibabel.brikhead.AFNIHeader method)
get_data_scaling() (nibabel.brikhead.AFNIHeader method)
get_fdata() (nibabel.dataobj_images.DataobjImage method)
get_filename() (nibabel.filebasedimages.FileBasedImage method)
get_header() (nibabel.filebasedimages.FileBasedImage method)
get_headers_diff() (in module nibabel.cmdline.diff)
get_keywords() (in module nibabel._version)
get_opt_parser() (in module nibabel.cmdline.dicomfs)
(in module nibabel.cmdline.diff)
(in module nibabel.cmdline.ls)
(in module nibabel.cmdline.parrec2nii)
get_paths() (nibabel.cmdline.dicomfs.DICOMFS method)
get_shape() (nibabel.dataobj_images.DataobjImage method)
get_slope_inter() (nibabel.brikhead.AFNIHeader method)
get_space() (nibabel.brikhead.AFNIHeader method)
get_versions() (in module nibabel._version)
get_volume_labels() (nibabel.brikhead.AFNIHeader method)
getattr() (nibabel.cmdline.dicomfs.DICOMFS method)
git_get_keywords() (in module nibabel._version)
git_pieces_from_vcs() (in module nibabel._version)
git_versions_from_keywords() (in module nibabel._version)
H
HANDLER_NAMES (nibabel.xmlutils.XmlParser attribute)
header (nibabel.filebasedimages.FileBasedImage property)
header_class (nibabel.brikhead.AFNIImage attribute)
(nibabel.filebasedimages.FileBasedImage attribute)
I
ImageArrayProxy (nibabel.brikhead.AFNIImage attribute)
ImageFileError (class in nibabel.filebasedimages)
in_memory (nibabel.dataobj_images.DataobjImage property)
instance_to_filename() (nibabel.filebasedimages.FileBasedImage class method)
is_bad_version() (nibabel.deprecator.Deprecator method)
K
kw_only_func() (in module nibabel.keywordonly)
kw_only_meth() (in module nibabel.keywordonly)
L
link_to() (nibabel.viewers.OrthoSlicer3D method)
load() (nibabel.dataobj_images.DataobjImage class method)
(nibabel.filebasedimages.FileBasedImage class method)
lossless_slice() (in module nibabel.cmdline.roi)
M
main() (in module nibabel.cmdline.conform)
(in module nibabel.cmdline.dicomfs)
(in module nibabel.cmdline.diff)
(in module nibabel.cmdline.ls)
(in module nibabel.cmdline.nifti_dx)
(in module nibabel.cmdline.parrec2nii)
(in module nibabel.cmdline.roi)
(in module nibabel.cmdline.stats)
(in module nibabel.cmdline.tck2trk)
(in module nibabel.cmdline.trk2tck)
make_file_map() (nibabel.filebasedimages.FileBasedImage class method)
makeable (nibabel.brikhead.AFNIImage attribute)
(nibabel.filebasedimages.FileBasedImage attribute)
mask_volume() (in module nibabel.imagestats)
match_path() (nibabel.cmdline.dicomfs.DICOMFS method)
module
nibabel
nibabel._h5py_compat
nibabel._version
nibabel.affines
nibabel.analyze
nibabel.arrayproxy
nibabel.arraywriters
nibabel.batteryrunners
nibabel.benchmarks
nibabel.benchmarks.bench_array_to_file
nibabel.benchmarks.bench_arrayproxy_slicing
nibabel.benchmarks.bench_fileslice
nibabel.benchmarks.bench_finite_range
nibabel.benchmarks.bench_load_save
nibabel.benchmarks.bench_streamlines
nibabel.benchmarks.butils
nibabel.brikhead
nibabel.casting
nibabel.cifti2
nibabel.cifti2.cifti2
nibabel.cifti2.cifti2_axes
nibabel.cmdline
nibabel.cmdline.conform
nibabel.cmdline.dicomfs
nibabel.cmdline.diff
nibabel.cmdline.ls
nibabel.cmdline.nifti_dx
nibabel.cmdline.parrec2nii
nibabel.cmdline.roi
nibabel.cmdline.stats
nibabel.cmdline.tck2trk
nibabel.cmdline.trk2tck
nibabel.cmdline.utils
nibabel.data
nibabel.dataobj_images
nibabel.deprecated
nibabel.deprecator
nibabel.dft
nibabel.ecat
nibabel.environment
nibabel.eulerangles
nibabel.filebasedimages
nibabel.fileholders
nibabel.filename_parser
nibabel.fileslice
nibabel.fileutils
nibabel.freesurfer
nibabel.funcs
nibabel.gifti
nibabel.gifti.gifti
nibabel.gifti.giftiio
nibabel.imageclasses
nibabel.imageglobals
nibabel.imagestats
nibabel.keywordonly
nibabel.loadsave
nibabel.minc1
nibabel.minc2
nibabel.mriutils
nibabel.nicom
nibabel.nicom.csareader
nibabel.nicom.dicomreaders
nibabel.nicom.dicomwrappers
nibabel.nicom.dwiparams
nibabel.nicom.structreader
nibabel.nifti1
nibabel.nifti2
nibabel.onetime
nibabel.openers
nibabel.optpkg
nibabel.orientations
nibabel.parrec
nibabel.processing
nibabel.pydicom_compat
nibabel.quaternions
nibabel.rstutils
nibabel.spaces
nibabel.spatialimages
nibabel.spm2analyze
nibabel.spm99analyze
nibabel.streamlines
nibabel.tmpdirs
nibabel.trackvis
nibabel.tripwire
nibabel.viewers
nibabel.volumeutils
nibabel.wrapstruct
nibabel.xmlutils
ModuleProxy (class in nibabel.deprecated)
MRIError (class in nibabel.mriutils)
N
n_volumes (nibabel.viewers.OrthoSlicer3D property)
ndim (nibabel.dataobj_images.DataobjImage property)
nibabel
module
nibabel._h5py_compat
module
nibabel._version
module
nibabel.affines
module
nibabel.analyze
module
nibabel.arrayproxy
module
nibabel.arraywriters
module
nibabel.batteryrunners
module
nibabel.benchmarks
module
nibabel.benchmarks.bench_array_to_file
module
nibabel.benchmarks.bench_arrayproxy_slicing
module
nibabel.benchmarks.bench_fileslice
module
nibabel.benchmarks.bench_finite_range
module
nibabel.benchmarks.bench_load_save
module
nibabel.benchmarks.bench_streamlines
module
nibabel.benchmarks.butils
module
nibabel.brikhead
module
nibabel.casting
module
nibabel.cifti2
module
nibabel.cifti2.cifti2
module
nibabel.cifti2.cifti2_axes
module
nibabel.cmdline
module
nibabel.cmdline.conform
module
nibabel.cmdline.dicomfs
module
nibabel.cmdline.diff
module
nibabel.cmdline.ls
module
nibabel.cmdline.nifti_dx
module
nibabel.cmdline.parrec2nii
module
nibabel.cmdline.roi
module
nibabel.cmdline.stats
module
nibabel.cmdline.tck2trk
module
nibabel.cmdline.trk2tck
module
nibabel.cmdline.utils
module
nibabel.data
module
nibabel.dataobj_images
module
nibabel.deprecated
module
nibabel.deprecator
module
nibabel.dft
module
nibabel.ecat
module
nibabel.environment
module
nibabel.eulerangles
module
nibabel.filebasedimages
module
nibabel.fileholders
module
nibabel.filename_parser
module
nibabel.fileslice
module
nibabel.fileutils
module
nibabel.freesurfer
module
nibabel.funcs
module
nibabel.gifti
module
nibabel.gifti.gifti
module
nibabel.gifti.giftiio
module
nibabel.imageclasses
module
nibabel.imageglobals
module
nibabel.imagestats
module
nibabel.keywordonly
module
nibabel.loadsave
module
nibabel.minc1
module
nibabel.minc2
module
nibabel.mriutils
module
nibabel.nicom
module
nibabel.nicom.csareader
module
nibabel.nicom.dicomreaders
module
nibabel.nicom.dicomwrappers
module
nibabel.nicom.dwiparams
module
nibabel.nicom.structreader
module
nibabel.nifti1
module
nibabel.nifti2
module
nibabel.onetime
module
nibabel.openers
module
nibabel.optpkg
module
nibabel.orientations
module
nibabel.parrec
module
nibabel.processing
module
nibabel.pydicom_compat
module
nibabel.quaternions
module
nibabel.rstutils
module
nibabel.spaces
module
nibabel.spatialimages
module
nibabel.spm2analyze
module
nibabel.spm99analyze
module
nibabel.streamlines
module
nibabel.tmpdirs
module
nibabel.trackvis
module
nibabel.tripwire
module
nibabel.viewers
module
nibabel.volumeutils
module
nibabel.wrapstruct
module
nibabel.xmlutils
module
NotThisMethod (class in nibabel._version)
O
open() (nibabel.cmdline.dicomfs.DICOMFS method)
OrthoSlicer3D (class in nibabel.viewers)
P
parse() (nibabel.xmlutils.XmlParser method)
parse_AFNI_header() (in module nibabel.brikhead)
parse_args() (in module nibabel.cmdline.tck2trk)
(in module nibabel.cmdline.trk2tck)
parse_slice() (in module nibabel.cmdline.roi)
path_maybe_image() (nibabel.filebasedimages.FileBasedImage class method)
plus_or_dot() (in module nibabel._version)
position (nibabel.viewers.OrthoSlicer3D property)
print_git_title() (in module nibabel.benchmarks.butils)
proc_file() (in module nibabel.cmdline.ls)
(in module nibabel.cmdline.parrec2nii)
R
read() (nibabel.cmdline.dicomfs.DICOMFS method)
read_zt_byte_strings() (in module nibabel.fileutils)
readdir() (nibabel.cmdline.dicomfs.DICOMFS method)
register_vcs_handler() (in module nibabel._version)
release() (nibabel.cmdline.dicomfs.DICOMFS method)
render() (in module nibabel._version)
render_git_describe() (in module nibabel._version)
render_git_describe_long() (in module nibabel._version)
render_pep440() (in module nibabel._version)
render_pep440_old() (in module nibabel._version)
render_pep440_post() (in module nibabel._version)
render_pep440_pre() (in module nibabel._version)
resample_from_to() (in module nibabel.processing)
resample_to_output() (in module nibabel.processing)
run_command() (in module nibabel._version)
run_slices() (in module nibabel.benchmarks.bench_fileslice)
rw (nibabel.brikhead.AFNIImage attribute)
(nibabel.filebasedimages.FileBasedImage attribute)
S
safe_get() (in module nibabel.cmdline.utils)
sanitize() (in module nibabel.cmdline.roi)
scaling (nibabel.brikhead.AFNIArrayProxy property)
SerializableImage (class in nibabel.filebasedimages)
set_filename() (nibabel.filebasedimages.FileBasedImage method)
set_position() (nibabel.viewers.OrthoSlicer3D method)
set_volume_idx() (nibabel.viewers.OrthoSlicer3D method)
shape (nibabel.dataobj_images.DataobjImage property)
show() (nibabel.viewers.OrthoSlicer3D method)
sigma2fwhm() (in module nibabel.processing)
slice2volume() (in module nibabel.spaces)
smooth_image() (in module nibabel.processing)
StartElementHandler() (nibabel.xmlutils.XmlParser method)
T
table2string() (in module nibabel.cmdline.utils)
to_bytes() (nibabel.filebasedimages.SerializableImage method)
to_file_map() (nibabel.filebasedimages.FileBasedImage method)
to_filename() (nibabel.filebasedimages.FileBasedImage method)
to_files() (nibabel.filebasedimages.FileBasedImage method)
to_filespec() (nibabel.filebasedimages.FileBasedImage method)
to_xml() (nibabel.xmlutils.XmlSerializable method)
U
uncache() (nibabel.dataobj_images.DataobjImage method)
V
valid_exts (nibabel.brikhead.AFNIImage attribute)
(nibabel.filebasedimages.FileBasedImage attribute)
verbose() (in module nibabel.cmdline.parrec2nii)
(in module nibabel.cmdline.utils)
VersioneerConfig (class in nibabel._version)
versions_from_parentdir() (in module nibabel._version)
VisibleDeprecationWarning (class in nibabel.deprecated)
vox2out_vox() (in module nibabel.spaces)
W
warn_message (nibabel.deprecated.FutureWarningMixin attribute)
write_to() (nibabel.filebasedimages.FileBasedHeader method)
X
XmlBasedHeader (class in nibabel.xmlutils)
XmlParser (class in nibabel.xmlutils)
XmlSerializable (class in nibabel.xmlutils)