libpappsomspp
Library for mass spectrometry
grpgroupingmonitor.cpp
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1
2/*******************************************************************************
3 * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4 *
5 * This file is part of the PAPPSOms++ library.
6 *
7 * PAPPSOms++ is free software: you can redistribute it and/or modify
8 * it under the terms of the GNU General Public License as published by
9 * the Free Software Foundation, either version 3 of the License, or
10 * (at your option) any later version.
11 *
12 * PAPPSOms++ is distributed in the hope that it will be useful,
13 * but WITHOUT ANY WARRANTY; without even the implied warranty of
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15 * GNU General Public License for more details.
16 *
17 * You should have received a copy of the GNU General Public License
18 * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
19 *
20 * Contributors:
21 * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
22 *implementation
23 ******************************************************************************/
24
25#include <QTextStream>
26#include <iostream>
27#include "grpgroupingmonitor.h"
28
29namespace pappso
30{
31
32
34{
35}
36
38{
39 mp_outStream = new QTextStream(stderr, QIODevice::WriteOnly);
40}
41
43{
44
45 mp_outStream->flush();
46 delete mp_outStream;
47}
48
49void
50GrpGroupingMonitor::startGrouping(std::size_t total_number_protein,
51 std::size_t total_number_peptide)
52{
53 m_totalNumberProtein = total_number_protein;
54 m_totalNumberPeptide = total_number_peptide;
56 (*mp_outStream) << "start grouping " << m_totalNumberProtein << " proteins "
57 << total_number_peptide << " peptides\n";
58 mp_outStream->flush();
59}
60void
62{
64 (*mp_outStream) << "grouping protein " << m_currentProtein << " on "
65 << m_totalNumberProtein << "\n";
66 mp_outStream->flush();
67}
68void
70 std::size_t total_number_group)
71{
72 (*mp_outStream) << "removing non informative subgroups in all groups ("
73 << total_number_group << ")\n";
74 mp_outStream->flush();
75}
76void
78 std::size_t total_number_group)
79{
80 (*mp_outStream) << "removing non informative subgroups finished, remaining "
81 << total_number_group << " groups\n";
82 mp_outStream->flush();
83}
84void
86{
87 (*mp_outStream) << "removing non informative on a single group\n";
88 mp_outStream->flush();
89}
90void
91GrpGroupingMonitor::startNumberingAllGroups(std::size_t total_number_group)
92{
93 (*mp_outStream) << "numbering " << total_number_group << " groups\n";
94 mp_outStream->flush();
95}
96void
98{
99 (*mp_outStream) << "grouping finished\n";
100 mp_outStream->flush();
101}
102
103} // namespace pappso
virtual void startNumberingAllGroups(std::size_t total_number_group)
virtual void removingNonInformativeSubGroupsInGroup()
virtual void startRemovingNonInformativeSubGroupsInAllGroups(std::size_t total_number_group)
virtual void startGrouping(std::size_t total_number_protein, std::size_t total_number_peptide)
virtual void stopRemovingNonInformativeSubGroupsInAllGroups(std::size_t total_number_group)
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39