libpappsomspp
Library for mass spectrometry
pappso::GrpGroupingMonitor Class Reference

#include <grpgroupingmonitor.h>

Inheritance diagram for pappso::GrpGroupingMonitor:
pappso::GrpGroupingMonitorInterface

Public Member Functions

 GrpGroupingMonitor ()
 
virtual ~GrpGroupingMonitor ()
 
virtual void startGrouping (std::size_t total_number_protein, std::size_t total_number_peptide)
 
virtual void groupingProtein ()
 
virtual void startRemovingNonInformativeSubGroupsInAllGroups (std::size_t total_number_group)
 
virtual void stopRemovingNonInformativeSubGroupsInAllGroups (std::size_t total_number_group)
 
virtual void removingNonInformativeSubGroupsInGroup ()
 
virtual void startNumberingAllGroups (std::size_t total_number_group)
 
virtual void stopGrouping ()
 
- Public Member Functions inherited from pappso::GrpGroupingMonitorInterface
virtual ~GrpGroupingMonitorInterface ()
 
virtual void startGrouping (std::size_t total_number_protein, std::size_t total_number_peptide)=0
 
virtual void groupingProtein ()=0
 
virtual void startRemovingNonInformativeSubGroupsInAllGroups (std::size_t total_number_group)=0
 
virtual void stopRemovingNonInformativeSubGroupsInAllGroups (std::size_t total_number_group)=0
 
virtual void removingNonInformativeSubGroupsInGroup ()=0
 
virtual void startNumberingAllGroups (std::size_t total_number_group)=0
 
virtual void stopGrouping ()=0
 

Private Attributes

QTextStream * mp_outStream
 
std::size_t m_totalNumberProtein
 
std::size_t m_totalNumberPeptide
 
std::size_t m_currentProtein
 

Detailed Description

Definition at line 48 of file grpgroupingmonitor.h.

Constructor & Destructor Documentation

◆ GrpGroupingMonitor()

pappso::GrpGroupingMonitor::GrpGroupingMonitor ( )

Definition at line 37 of file grpgroupingmonitor.cpp.

38{
39 mp_outStream = new QTextStream(stderr, QIODevice::WriteOnly);
40}

References mp_outStream.

◆ ~GrpGroupingMonitor()

pappso::GrpGroupingMonitor::~GrpGroupingMonitor ( )
virtual

Definition at line 42 of file grpgroupingmonitor.cpp.

43{
44
45 mp_outStream->flush();
46 delete mp_outStream;
47}

References mp_outStream.

Member Function Documentation

◆ groupingProtein()

void pappso::GrpGroupingMonitor::groupingProtein ( )
virtual

Implements pappso::GrpGroupingMonitorInterface.

Definition at line 61 of file grpgroupingmonitor.cpp.

62{
64 (*mp_outStream) << "grouping protein " << m_currentProtein << " on "
65 << m_totalNumberProtein << "\n";
66 mp_outStream->flush();
67}

References m_currentProtein, m_totalNumberProtein, and mp_outStream.

◆ removingNonInformativeSubGroupsInGroup()

void pappso::GrpGroupingMonitor::removingNonInformativeSubGroupsInGroup ( )
virtual

Implements pappso::GrpGroupingMonitorInterface.

Definition at line 85 of file grpgroupingmonitor.cpp.

86{
87 (*mp_outStream) << "removing non informative on a single group\n";
88 mp_outStream->flush();
89}

References mp_outStream.

◆ startGrouping()

void pappso::GrpGroupingMonitor::startGrouping ( std::size_t  total_number_protein,
std::size_t  total_number_peptide 
)
virtual

Implements pappso::GrpGroupingMonitorInterface.

Definition at line 50 of file grpgroupingmonitor.cpp.

52{
53 m_totalNumberProtein = total_number_protein;
54 m_totalNumberPeptide = total_number_peptide;
56 (*mp_outStream) << "start grouping " << m_totalNumberProtein << " proteins "
57 << total_number_peptide << " peptides\n";
58 mp_outStream->flush();
59}

References m_currentProtein, m_totalNumberPeptide, m_totalNumberProtein, and mp_outStream.

◆ startNumberingAllGroups()

void pappso::GrpGroupingMonitor::startNumberingAllGroups ( std::size_t  total_number_group)
virtual

Implements pappso::GrpGroupingMonitorInterface.

Definition at line 91 of file grpgroupingmonitor.cpp.

92{
93 (*mp_outStream) << "numbering " << total_number_group << " groups\n";
94 mp_outStream->flush();
95}

References mp_outStream.

◆ startRemovingNonInformativeSubGroupsInAllGroups()

void pappso::GrpGroupingMonitor::startRemovingNonInformativeSubGroupsInAllGroups ( std::size_t  total_number_group)
virtual

Implements pappso::GrpGroupingMonitorInterface.

Definition at line 69 of file grpgroupingmonitor.cpp.

71{
72 (*mp_outStream) << "removing non informative subgroups in all groups ("
73 << total_number_group << ")\n";
74 mp_outStream->flush();
75}

References mp_outStream.

◆ stopGrouping()

void pappso::GrpGroupingMonitor::stopGrouping ( )
virtual

Implements pappso::GrpGroupingMonitorInterface.

Definition at line 97 of file grpgroupingmonitor.cpp.

98{
99 (*mp_outStream) << "grouping finished\n";
100 mp_outStream->flush();
101}

References mp_outStream.

◆ stopRemovingNonInformativeSubGroupsInAllGroups()

void pappso::GrpGroupingMonitor::stopRemovingNonInformativeSubGroupsInAllGroups ( std::size_t  total_number_group)
virtual

Implements pappso::GrpGroupingMonitorInterface.

Definition at line 77 of file grpgroupingmonitor.cpp.

79{
80 (*mp_outStream) << "removing non informative subgroups finished, remaining "
81 << total_number_group << " groups\n";
82 mp_outStream->flush();
83}

References mp_outStream.

Member Data Documentation

◆ m_currentProtein

std::size_t pappso::GrpGroupingMonitor::m_currentProtein
private

Definition at line 54 of file grpgroupingmonitor.h.

Referenced by groupingProtein(), and startGrouping().

◆ m_totalNumberPeptide

std::size_t pappso::GrpGroupingMonitor::m_totalNumberPeptide
private

Definition at line 53 of file grpgroupingmonitor.h.

Referenced by startGrouping().

◆ m_totalNumberProtein

std::size_t pappso::GrpGroupingMonitor::m_totalNumberProtein
private

Definition at line 52 of file grpgroupingmonitor.h.

Referenced by groupingProtein(), and startGrouping().

◆ mp_outStream


The documentation for this class was generated from the following files: