libpappsomspp
Library for mass spectrometry
filterceilingamplitudepercentage.h
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1/* BEGIN software license
2 *
3 * msXpertSuite - mass spectrometry software suite
4 * -----------------------------------------------
5 * Copyright(C) 2009,...,2021 Filippo Rusconi
6 *
7 * http://www.msxpertsuite.org
8 *
9 * This file is part of the msXpertSuite project.
10 *
11 * The msXpertSuite project is the successor of the massXpert project. This
12 * project now includes various independent modules:
13 *
14 * - massXpert, model polymer chemistries and simulate mass spectrometric data;
15 * - mineXpert, a powerful TIC chromatogram/mass spectrum viewer/miner;
16 *
17 * This program is free software: you can redistribute it and/or modify
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31 */
32
33
34#pragma once
35
36
37#include <QObject>
38
39#include "../../trace/trace.h"
40#include "../../exportinmportconfig.h"
41#include "filternameinterface.h"
42
43
44namespace pappso
45{
46
47
48class FilterCeilingAmplitudePercentage;
49
50typedef std::shared_ptr<FilterCeilingAmplitudePercentage> FilterCeilingAmplitudePercentageSPtr;
51typedef std::shared_ptr<const FilterCeilingAmplitudePercentage> FilterCeilingAmplitudePercentageCstSPtr;
52
53
54/**
55 * @brief Redefines the ceiling intensity of the Trace
56 *
57 * The amplitude of the trace is computed (maxValue - minValue)
58 * Its fraction is calculated = amplitude * (percentage / 100)
59 * The threshold value is computed as (minValue + fraction)
60 *
61 * When the values to be filtered are above that threshold they acquire that
62 * threshold value.
63 *
64 * When the values to be filtered are below that threshold they remain
65 * unchanged.
66 *
67 * This effectively re-ceilings the values to threshold.
68 */
70{
71 public:
72 FilterCeilingAmplitudePercentage(double percentage);
73 FilterCeilingAmplitudePercentage(const QString &parameters);
75
77
79
80 Trace &filter(Trace &data_points) const override;
81
82 double getPercentage() const;
83 QString name() const override;
84
85 QString toString() const override;
86
87 protected:
88 void buildFilterFromString(const QString &strBuildParams) override;
89
90 private:
92};
93} // namespace pappso
Redefines the ceiling intensity of the Trace.
Interface that allows to build filter objects from strings.
A simple container of DataPoint instances.
Definition: trace.h:147
#define PMSPP_LIB_DECL
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39
std::shared_ptr< const FilterCeilingAmplitudePercentage > FilterCeilingAmplitudePercentageCstSPtr
std::shared_ptr< FilterCeilingAmplitudePercentage > FilterCeilingAmplitudePercentageSPtr