addElement(int atomCount, int noIsotopes, const double *isotopeMasses, const double *isotopeProbabilities) | IsoSpec::Iso | |
advanceToNextConfiguration() override final | IsoSpec::IsoThresholdGenerator | inlinevirtual |
advanceToNextConfigurationWithinLayer() (defined in IsoSpec::IsoGenerator) | IsoSpec::IsoGenerator | inlinevirtual |
allDim | IsoSpec::Iso | protected |
atomCounts | IsoSpec::Iso | protected |
confSize | IsoSpec::Iso | protected |
count_confs() | IsoSpec::IsoThresholdGenerator | |
dimNumber | IsoSpec::Iso | protected |
get_conf_signature(int *space) const override final | IsoSpec::IsoThresholdGenerator | inlinevirtual |
getAllDim() const | IsoSpec::Iso | inline |
getDimNumber() const | IsoSpec::Iso | inline |
getHeaviestPeakMass() const | IsoSpec::Iso | |
getLightestPeakMass() const | IsoSpec::Iso | |
getModeLProb() const | IsoSpec::Iso | inline |
getModeMass() const | IsoSpec::Iso | |
getMonoisotopicPeakMass() const | IsoSpec::Iso | |
getTheoreticalAverageMass() const | IsoSpec::Iso | |
getUnlikeliestPeakLProb() const | IsoSpec::Iso | |
Iso() (defined in IsoSpec::Iso) | IsoSpec::Iso | |
Iso(int _dimNumber, const int *_isotopeNumbers, const int *_atomCounts, const double *const *_isotopeMasses, const double *const *_isotopeProbabilities) | IsoSpec::Iso | |
Iso(const char *formula) | IsoSpec::Iso | |
Iso(const std::string &formula) | IsoSpec::Iso | inline |
Iso(Iso &&other) | IsoSpec::Iso | |
Iso(const Iso &other, bool fullcopy) | IsoSpec::Iso | |
IsoGenerator(Iso &&iso, bool alloc_partials=true) | IsoSpec::IsoGenerator | |
IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) | IsoSpec::IsoThresholdGenerator | |
isotopeNumbers | IsoSpec::Iso | protected |
lprob() const override final | IsoSpec::IsoThresholdGenerator | inlinevirtual |
marginals | IsoSpec::Iso | protected |
mass() const override final | IsoSpec::IsoThresholdGenerator | inlinevirtual |
modeLProb | IsoSpec::Iso | protected |
nextLayer(double) (defined in IsoSpec::IsoGenerator) | IsoSpec::IsoGenerator | inlinevirtual |
partialLProbs | IsoSpec::IsoGenerator | protected |
partialMasses | IsoSpec::IsoGenerator | protected |
partialProbs | IsoSpec::IsoGenerator | protected |
prob() const override final | IsoSpec::IsoThresholdGenerator | inlinevirtual |
reset() | IsoSpec::IsoThresholdGenerator | |
terminate_search() | IsoSpec::IsoThresholdGenerator | |
~Iso() | IsoSpec::Iso | virtual |
~IsoGenerator() | IsoSpec::IsoGenerator | virtual |
~IsoThresholdGenerator() (defined in IsoSpec::IsoThresholdGenerator) | IsoSpec::IsoThresholdGenerator | |