S
- each Sequence
in the pair of alignment Profile
s is of type SC
- each element of an AlignedSequence
is a Compound
of type CScorer
PartitionRefiner<S,C>
, ProfileProfileAligner<S,C>
AbstractProfileProfileAligner
, SimpleProfileProfileAligner
public interface ProfileProfileScorer<S extends Sequence<C>,C extends Compound> extends Scorer
Modifier and Type | Method | Description |
---|---|---|
Profile<S,C> |
getQuery() |
Returns the first profile of the pair.
|
Profile<S,C> |
getTarget() |
Returns the second profile of the pair.
|
getDistance, getDistance, getMaxScore, getMinScore, getScore, getSimilarity, getSimilarity