java.lang.Comparable<Annotation>
, MultipleUris
, PhylogenyData
public class Annotation extends java.lang.Object implements PhylogenyData, MultipleUris, java.lang.Comparable<Annotation>
Constructor | Description |
---|---|
Annotation() |
|
Annotation(java.lang.String ref) |
|
Annotation(java.lang.String ref_source,
java.lang.String ref_value) |
Modifier and Type | Method | Description |
---|---|---|
void |
addUri(Uri uri) |
|
java.lang.StringBuffer |
asSimpleText() |
|
java.lang.StringBuffer |
asText() |
|
int |
compareTo(Annotation o) |
|
PhylogenyData |
copy() |
Creates a new PhylogenyData object with identical values as this
PhylogenyData.
|
boolean |
equals(java.lang.Object o) |
|
Confidence |
getConfidence() |
|
java.lang.String |
getDesc() |
|
java.lang.String |
getEvidence() |
|
PropertiesMap |
getProperties() |
|
java.lang.String |
getRef() |
|
java.lang.String |
getRefSource() |
|
java.lang.String |
getRefValue() |
|
java.lang.String |
getSource() |
|
java.lang.String |
getType() |
|
Uri |
getUri(int index) |
|
java.util.List<Uri> |
getUris() |
|
boolean |
isEqual(PhylogenyData data) |
Compares this PhylogenyData to PhylogenyData data.
|
void |
setConfidence(Confidence confidence) |
|
void |
setDesc(java.lang.String desc) |
|
void |
setEvidence(java.lang.String evidence) |
|
void |
setProperties(PropertiesMap property) |
|
void |
setSource(java.lang.String source) |
|
void |
setType(java.lang.String type) |
|
void |
setUris(java.util.List<Uri> uris) |
|
java.lang.StringBuffer |
toNHX() |
|
void |
toPhyloXML(java.io.Writer writer,
int level,
java.lang.String indentation) |
Writes a phyloXML representation of this phylogeny data.
|
java.lang.String |
toString() |
public Annotation()
public Annotation(java.lang.String ref)
public Annotation(java.lang.String ref_source, java.lang.String ref_value)
public void addUri(Uri uri)
addUri
in interface MultipleUris
public java.lang.StringBuffer asSimpleText()
asSimpleText
in interface PhylogenyData
public java.lang.StringBuffer asText()
asText
in interface PhylogenyData
public int compareTo(Annotation o)
compareTo
in interface java.lang.Comparable<Annotation>
public PhylogenyData copy()
PhylogenyData
copy
in interface PhylogenyData
public boolean equals(java.lang.Object o)
equals
in class java.lang.Object
public Confidence getConfidence()
public java.lang.String getDesc()
public java.lang.String getEvidence()
public PropertiesMap getProperties()
public java.lang.String getRef()
public final java.lang.String getRefSource()
public final java.lang.String getRefValue()
public java.lang.String getSource()
public java.lang.String getType()
public Uri getUri(int index)
getUri
in interface MultipleUris
public java.util.List<Uri> getUris()
getUris
in interface MultipleUris
public boolean isEqual(PhylogenyData data)
PhylogenyData
isEqual
in interface PhylogenyData
public void setConfidence(Confidence confidence)
public void setDesc(java.lang.String desc)
public void setEvidence(java.lang.String evidence)
public void setProperties(PropertiesMap property)
public void setSource(java.lang.String source)
public void setType(java.lang.String type)
public void setUris(java.util.List<Uri> uris)
setUris
in interface MultipleUris
public java.lang.StringBuffer toNHX()
toNHX
in interface PhylogenyData
public void toPhyloXML(java.io.Writer writer, int level, java.lang.String indentation) throws java.io.IOException
PhylogenyData
toPhyloXML
in interface PhylogenyData
java.io.IOException
public java.lang.String toString()
toString
in class java.lang.Object