public class MultiThreadedDBSearch
extends java.lang.Object
Constructor | Description |
---|---|
MultiThreadedDBSearch(java.lang.String name,
Structure structure,
java.lang.String outFile,
StructureAlignment algorithm,
int nrCPUs,
boolean domainSplit) |
Modifier and Type | Method | Description |
---|---|---|
void |
cleanup() |
|
StructureAlignment |
getAlgorithm() |
|
AtomCache |
getAtomCache() |
|
java.lang.String |
getCustomChain1() |
|
java.lang.String |
getCustomFile1() |
|
static java.lang.String |
getLegend(java.lang.String algorithmName) |
|
java.lang.String |
getOutFile() |
|
java.io.File |
getResultFile() |
|
void |
interrupt() |
stops what is currently happening and does not continue
|
void |
run() |
|
void |
setAlgorithm(StructureAlignment algo) |
|
void |
setAtomCache(AtomCache cache) |
|
void |
setCustomChain1(java.lang.String customChain1) |
sets a chain in a custom, user provided file
|
void |
setCustomFile1(java.lang.String customFile1) |
set the file path for a custom, user provided file, not a standard PDB file.
|
void |
setOutFile(java.lang.String outFile) |
|
void |
setResultFile(java.io.File resultList) |
public MultiThreadedDBSearch(java.lang.String name, Structure structure, java.lang.String outFile, StructureAlignment algorithm, int nrCPUs, boolean domainSplit)
public java.lang.String getCustomFile1()
public void setCustomFile1(java.lang.String customFile1)
customFile1
- public java.lang.String getCustomChain1()
public void setCustomChain1(java.lang.String customChain1)
customChain1
- public AtomCache getAtomCache()
public void setAtomCache(AtomCache cache)
public StructureAlignment getAlgorithm()
public void setAlgorithm(StructureAlignment algo)
public java.lang.String getOutFile()
public void setOutFile(java.lang.String outFile)
public static java.lang.String getLegend(java.lang.String algorithmName)
public java.io.File getResultFile()
public void setResultFile(java.io.File resultList)
public void run()
public void interrupt()
public void cleanup()