SequenceCreatorInterface<AminoAcidCompound>
CasePreservingProteinSequenceCreator
public class ProteinSequenceCreator extends java.lang.Object implements SequenceCreatorInterface<AminoAcidCompound>
Constructor | Description |
---|---|
ProteinSequenceCreator(CompoundSet<AminoAcidCompound> compoundSet) |
Modifier and Type | Method | Description |
---|---|---|
AbstractSequence<AminoAcidCompound> |
getSequence(java.lang.String sequence,
long index) |
|
AbstractSequence<AminoAcidCompound> |
getSequence(java.util.List<AminoAcidCompound> list) |
|
AbstractSequence<AminoAcidCompound> |
getSequence(ProxySequenceReader<AminoAcidCompound> proxyLoader,
long index) |
public ProteinSequenceCreator(CompoundSet<AminoAcidCompound> compoundSet)
compoundSet
- public AbstractSequence<AminoAcidCompound> getSequence(java.lang.String sequence, long index) throws CompoundNotFoundException
getSequence
in interface SequenceCreatorInterface<AminoAcidCompound>
sequence
- index
- not used in this implementationCompoundNotFoundException
public AbstractSequence<AminoAcidCompound> getSequence(java.util.List<AminoAcidCompound> list)
getSequence
in interface SequenceCreatorInterface<AminoAcidCompound>
list
- public AbstractSequence<AminoAcidCompound> getSequence(ProxySequenceReader<AminoAcidCompound> proxyLoader, long index)
getSequence
in interface SequenceCreatorInterface<AminoAcidCompound>
proxyLoader
- index
- not used in this implementation