FastqWriter
public final class SangerFastqWriter
extends java.lang.Object
FastqVariant.FASTQ_SANGER
formatted sequences.Constructor | Description |
---|---|
SangerFastqWriter() |
Modifier and Type | Method | Description |
---|---|---|
<T extends java.lang.Appendable> |
append(T appendable,
java.lang.Iterable<Fastq> fastq) |
Append the specified FASTQ formatted sequences to the specified appendable.
|
<T extends java.lang.Appendable> |
append(T appendable,
Fastq... fastq) |
Append the specified FASTQ formatted sequences to the specified appendable.
|
protected Fastq |
convert(Fastq fastq) |
Convert the specified FASTQ formatted sequence if necessary.
|
void |
write(java.io.File file,
java.lang.Iterable<Fastq> fastq) |
Write the specified FASTQ formatted sequences to the specified file.
|
void |
write(java.io.File file,
Fastq... fastq) |
Write the specified FASTQ formatted sequences to the specified file.
|
void |
write(java.io.OutputStream outputStream,
java.lang.Iterable<Fastq> fastq) |
Write the specified FASTQ formatted sequences to the specified output stream.
|
void |
write(java.io.OutputStream outputStream,
Fastq... fastq) |
Write the specified FASTQ formatted sequences to the specified output stream.
|
protected Fastq convert(Fastq fastq)
fastq
- FASTQ formatted sequence to convert, must not be nullpublic final <T extends java.lang.Appendable> T append(T appendable, Fastq... fastq) throws java.io.IOException
FastqWriter
append
in interface FastqWriter
T
- extends Appendableappendable
- appendable to append the specified FASTQ formatted sequences to, must not be nullfastq
- variable number of FASTQ formatted sequences to append, must not be nulljava.io.IOException
- if an I/O error occurspublic final <T extends java.lang.Appendable> T append(T appendable, java.lang.Iterable<Fastq> fastq) throws java.io.IOException
FastqWriter
append
in interface FastqWriter
T
- extends Appendableappendable
- appendable to append the specified FASTQ formatted sequences to, must not be nullfastq
- zero or more FASTQ formatted sequences to append, must not be nulljava.io.IOException
- if an I/O error occurspublic final void write(java.io.File file, Fastq... fastq) throws java.io.IOException
FastqWriter
write
in interface FastqWriter
file
- file to write to, must not be nullfastq
- variable number of FASTQ formatted sequences to write, must not be nulljava.io.IOException
- if an I/O error occurspublic final void write(java.io.File file, java.lang.Iterable<Fastq> fastq) throws java.io.IOException
FastqWriter
write
in interface FastqWriter
file
- file to write to, must not be nullfastq
- zero or more FASTQ formatted sequences to write, must not be nulljava.io.IOException
- if an I/O error occurspublic final void write(java.io.OutputStream outputStream, Fastq... fastq) throws java.io.IOException
FastqWriter
write
in interface FastqWriter
outputStream
- output stream to write to, must not be nullfastq
- variable number of FASTQ formatted sequences to write, must not be nulljava.io.IOException
- if an I/O error occurspublic final void write(java.io.OutputStream outputStream, java.lang.Iterable<Fastq> fastq) throws java.io.IOException
FastqWriter
write
in interface FastqWriter
outputStream
- output stream to write to, must not be nullfastq
- zero or more FASTQ formatted sequences to write, must not be nulljava.io.IOException
- if an I/O error occurs