Class | Description |
---|---|
org.biojava.nbio.structure.Identifier |
Use
StructureName instead. Deprecated in v. 4.2.0 |
org.biojava.nbio.structure.gui.RasmolCommandListener |
use org.biojava.nbio.structure.align.gui.jmol.RasmolCommandListener instead
|
Constructor | Description |
---|---|
org.biojava.nbio.structure.align.model.AFPChain() | |
org.biojava.nbio.structure.align.util.AtomCache(String, boolean) |
isSplit parameter is ignored (4.0.0)
|
org.biojava.nbio.structure.align.util.AtomCache(String, String, boolean) |
isSplit parameter is ignored (4.0.0)
|
org.biojava.nbio.core.sequence.transcription.RNAToAminoAcidTranslator(SequenceCreatorInterface<AminoAcidCompound>, CompoundSet<NucleotideCompound>, CompoundSet<Table.Codon>, CompoundSet<AminoAcidCompound>, Table, boolean, boolean, boolean) |
Retained for backwards compatability, setting
RNAToAminoAcidTranslator.stopAtStopCodons to false |
org.biojava.nbio.core.sequence.transcription.RNAToAminoAcidTranslator(SequenceCreatorInterface<AminoAcidCompound>, CompoundSet<NucleotideCompound>, CompoundSet<Table.Codon>, CompoundSet<AminoAcidCompound>, Table, boolean, boolean, boolean, boolean) |