ScoringMethodForExternalNode
public class LogBranchLengthBasedScoringMethod extends BranchCountingBasedScoringMethod
Modifier and Type | Field | Description |
---|---|---|
static double |
MAX_ALLOWED_BL_VALUE |
|
static double |
MIN_ALLOWED_BL_VALUE |
Constructor | Description |
---|---|
LogBranchLengthBasedScoringMethod() |
Modifier and Type | Method | Description |
---|---|---|
java.lang.String |
getDesciption() |
This returns a short description of this scoring method
|
double |
getNormalizationFactor(Phylogeny phylogeny) |
This calculates a normalization factor, so that a normalized score of 1.0
means complete coverage.
|
calculateScoreForExternalNode
public static final double MIN_ALLOWED_BL_VALUE
public static final double MAX_ALLOWED_BL_VALUE
public java.lang.String getDesciption()
ScoringMethodForExternalNode
getDesciption
in interface ScoringMethodForExternalNode
getDesciption
in class BranchCountingBasedScoringMethod
public double getNormalizationFactor(Phylogeny phylogeny)
ScoringMethodForExternalNode
getNormalizationFactor
in interface ScoringMethodForExternalNode
getNormalizationFactor
in class BranchCountingBasedScoringMethod
phylogeny
- Phylogeny containing the external nodes to score