S
- each Sequence
of the alignment pair is of type SC
- each element of an AlignedSequence
is a Compound
of type CPairwiseSequenceScorer<S,C>
, Scorer
FractionalIdentityInProfileScorer
, FractionalSimilarityInProfileScorer
public interface PairInProfileScorer<S extends Sequence<C>,C extends Compound> extends PairwiseSequenceScorer<S,C>
Profile
.Modifier and Type | Method | Description |
---|---|---|
Profile<S,C> |
getProfile() |
Returns the
Profile from which the aligned pair originated. |
getQuery, getTarget
getDistance, getDistance, getMaxScore, getMinScore, getScore, getSimilarity, getSimilarity