public class ClusterMerger
extends java.lang.Object
SequenceAlignmentCluster
stores the results.Constructor | Description |
---|---|
ClusterMerger(java.util.List<SequenceAlignmentCluster> clusters,
QuatSymmetryParameters parameters) |
Modifier and Type | Method | Description |
---|---|---|
void |
calcPairwiseAlignments() |
Aligns all pairs of input clusters, calculating their pairwise alignments
|
java.util.List<SequenceAlignmentCluster> |
getMergedClusters(double sequenceIdentityCutoff) |
Combine clusters based on the given sequence identity
|
public ClusterMerger(java.util.List<SequenceAlignmentCluster> clusters, QuatSymmetryParameters parameters)
public void calcPairwiseAlignments()
public java.util.List<SequenceAlignmentCluster> getMergedClusters(double sequenceIdentityCutoff)
sequenceIdentityCutoff
-