public final class MsaProperties
extends java.lang.Object
Constructor | Description |
---|---|
MsaProperties(int number_of_sequences,
int length,
double gap_ratio,
double entropy7,
double entropy21,
double avg_number_of_gaps,
java.lang.String removed_seq) |
|
MsaProperties(Msa msa,
java.lang.String removed_seq,
boolean calculate_normalized_shannon_entropy) |
Modifier and Type | Method | Description |
---|---|---|
double |
getAvgNumberOfGaps() |
|
double |
getEntropy21() |
|
double |
getEntropy7() |
|
double |
getGapRatio() |
|
int |
getLength() |
|
int |
getNumberOfSequences() |
|
java.lang.String |
getRemovedSeq() |
public MsaProperties(int number_of_sequences, int length, double gap_ratio, double entropy7, double entropy21, double avg_number_of_gaps, java.lang.String removed_seq)
public MsaProperties(Msa msa, java.lang.String removed_seq, boolean calculate_normalized_shannon_entropy)
public final double getEntropy21()
public final double getEntropy7()
public final double getGapRatio()
public final double getAvgNumberOfGaps()
public final int getLength()
public final int getNumberOfSequences()
public final java.lang.String getRemovedSeq()