S
- each Sequence
in the pair of alignment Profile
s is of type SC
- each element of an AlignedSequence
is a Compound
of type CAligner<S,C>
, ProfileProfileScorer<S,C>
, Scorer
AbstractProfileProfileAligner
, SimpleProfileProfileAligner
public interface ProfileProfileAligner<S extends Sequence<C>,C extends Compound> extends Aligner<S,C>, ProfileProfileScorer<S,C>
Aligner
for a pair of Profile
s.Modifier and Type | Method | Description |
---|---|---|
ProfilePair<S,C> |
getPair() |
Returns alignment profile pair.
|
getComputationTime, getProfile
getQuery, getTarget
getDistance, getDistance, getMaxScore, getMinScore, getScore, getSimilarity, getSimilarity
ProfilePair<S,C> getPair()