GraphComponentRefiner
, SequenceFunctionRefiner
public interface SymmetryRefiner
Modifier and Type | Method | Description |
---|---|---|
MultipleAlignment |
refine(AFPChain selfAlignment,
Atom[] atoms,
int order) |
Returns a refined symmetry alignment, where the repeat residues are
aligned consistently in a MultipleAlignment.
|
MultipleAlignment refine(AFPChain selfAlignment, Atom[] atoms, int order) throws RefinerFailedException, StructureException
selfAlignment
- optimal self-alignment calculated by CeSymmatoms
- coordinates of the structureorder
- order of symmetry to useRefinerFailedException
StructureException