BasicGenomeWideCombinableDomains
public interface GenomeWideCombinableDomains
Modifier and Type | Interface | Description |
---|---|---|
static class |
GenomeWideCombinableDomains.GenomeWideCombinableDomainsSortOrder |
Modifier and Type | Method | Description |
---|---|---|
boolean |
contains(java.lang.String key_id) |
|
CombinableDomains |
get(java.lang.String key_id) |
|
java.util.SortedMap<java.lang.String,CombinableDomains> |
getAllCombinableDomainsIds() |
|
java.util.SortedSet<java.lang.String> |
getAllDomainIds() |
This should return all domains ids present in the genome.
|
BinaryDomainCombination.DomainCombinationType |
getDomainCombinationType() |
|
java.util.SortedSet<java.lang.String> |
getMostPromiscuosDomain() |
|
DescriptiveStatistics |
getPerGenomeDomainPromiscuityStatistics() |
This should return a statistic for per domain
promiscuity in a genome.
|
int |
getSize() |
|
Species |
getSpecies() |
|
java.util.SortedSet<BinaryDomainCombination> |
toBinaryDomainCombinations() |
This should return all binary domain combinations present in the genome.
|
java.lang.StringBuilder |
toStringBuilder(GenomeWideCombinableDomains.GenomeWideCombinableDomainsSortOrder order) |
boolean contains(java.lang.String key_id)
CombinableDomains get(java.lang.String key_id)
java.util.SortedMap<java.lang.String,CombinableDomains> getAllCombinableDomainsIds()
java.util.SortedSet<java.lang.String> getAllDomainIds()
BinaryDomainCombination.DomainCombinationType getDomainCombinationType()
DescriptiveStatistics getPerGenomeDomainPromiscuityStatistics()
int getSize()
Species getSpecies()
java.util.SortedSet<BinaryDomainCombination> toBinaryDomainCombinations()
java.lang.StringBuilder toStringBuilder(GenomeWideCombinableDomains.GenomeWideCombinableDomainsSortOrder order)
java.util.SortedSet<java.lang.String> getMostPromiscuosDomain()