public class AFPChainCoordManager
extends java.lang.Object
Modifier and Type | Field | Description |
---|---|---|
static int |
DEFAULT_CHAR_SIZE |
size per character
|
static int |
DEFAULT_LINE_LENGTH |
number of chars per line
|
static int |
DEFAULT_LINE_SEPARATION |
separation of line 1 and 2 in alignment
|
static int |
DEFAULT_RIGHT_SPACER |
Space on the right side between sequence and legend.
|
static int |
DEFAULT_X_SPACE |
left boundary
|
static int |
DEFAULT_Y_SPACE |
top boundary
|
static int |
DEFAULT_Y_STEP |
size of space between rows
|
static int |
SUMMARY_POS |
Position at which the alignment summary is printed
|
Constructor | Description |
---|---|
AFPChainCoordManager() |
Modifier and Type | Method | Description |
---|---|---|
int |
getAligSeq(java.awt.Point point) |
returns the AligSeq (0 or 1) for a point
returns -1 if not over an alig seq.
|
java.awt.Point |
getEndLegendPosition(int lineNr,
int chainNr) |
|
java.awt.Point |
getLegendPosition(int lineNr,
int chainNr) |
provide the coordinates for where to draw the legend for line X and if it is chain 1 or 2
|
java.awt.Point |
getPanelPos(int aligSeq,
int i) |
get the position of the sequence position on the Panel
|
int |
getPreferredHeight() |
Y coordinate size
|
int |
getPreferredWidth() |
X coordinate size
|
int |
getSeqPos(int aligSeq,
java.awt.Point p) |
Convert from a X position in the JPanel to alignment position
|
int |
getSummaryPos() |
|
void |
setAFPChain(AFPChain afpChain) |
public static final int DEFAULT_RIGHT_SPACER
public static final int DEFAULT_LINE_LENGTH
public static final int DEFAULT_Y_STEP
public static final int DEFAULT_CHAR_SIZE
public static final int DEFAULT_LINE_SEPARATION
public static final int DEFAULT_X_SPACE
public static final int DEFAULT_Y_SPACE
public static final int SUMMARY_POS
public int getSummaryPos()
public int getPreferredWidth()
public int getPreferredHeight()
public int getSeqPos(int aligSeq, java.awt.Point p)
aligSeq
- sequence 0 or 1p
- point on panelpublic java.awt.Point getPanelPos(int aligSeq, int i)
aligSeq
- 0 or 1 for which of the two sequences to ask for.i
- sequence positionpublic void setAFPChain(AFPChain afpChain)
public int getAligSeq(java.awt.Point point)
point
- public java.awt.Point getLegendPosition(int lineNr, int chainNr)
lineNr
- which line is this forchainNr
- is it chain 0 or 1public java.awt.Point getEndLegendPosition(int lineNr, int chainNr)