public enum Frame extends java.lang.Enum<Frame>
Enum Constant | Description |
---|---|
ONE |
|
REVERSED_ONE |
|
REVERSED_THREE |
|
REVERSED_TWO |
|
THREE |
|
TWO |
Modifier and Type | Method | Description |
---|---|---|
static Frame[] |
getAllFrames() |
Delegates to
values() |
static Frame |
getDefaultFrame() |
|
static Frame[] |
getForwardFrames() |
Returns all frames in the forward orientation
|
static Frame[] |
getReverseFrames() |
Returns all frames which are in the reverse orientation
|
static Frame |
valueOf(java.lang.String name) |
Returns the enum constant of this type with the specified name.
|
static Frame[] |
values() |
Returns an array containing the constants of this enum type, in
the order they are declared.
|
<C extends NucleotideCompound> |
wrap(Sequence<C> incoming) |
Optionally wraps a Sequence in a reverse complementing view (if the
frame is on the reverse strand) and creates a sub sequence view if
it is required.
|
public static final Frame ONE
public static final Frame TWO
public static final Frame THREE
public static final Frame REVERSED_ONE
public static final Frame REVERSED_TWO
public static final Frame REVERSED_THREE
public static Frame[] values()
for (Frame c : Frame.values()) System.out.println(c);
public static Frame valueOf(java.lang.String name)
name
- the name of the enum constant to be returned.java.lang.IllegalArgumentException
- if this enum type has no constant with the specified namejava.lang.NullPointerException
- if the argument is nullpublic static Frame getDefaultFrame()
public static Frame[] getForwardFrames()
public static Frame[] getReverseFrames()
public <C extends NucleotideCompound> Sequence<C> wrap(Sequence<C> incoming)