public final class SupportCount
extends java.lang.Object
Modifier and Type | Method | Description |
---|---|---|
static double |
compare(Phylogeny phylogeny,
Phylogeny evaluator_phylogeny,
boolean strip_evaluator_phylogeny,
boolean update_support_in_phylogeny,
boolean re_root) |
|
static void |
count(Phylogeny phylogeny,
Phylogeny[] evaluator_phylogenies,
boolean strip_evaluator_phylogenies,
boolean verbose) |
|
static java.util.List<Phylogeny> |
count(Phylogeny phylogeny,
Phylogeny[] evaluator_phylogenies,
boolean strip_evaluator_phylogenies,
double similarity_threshold,
boolean verbose) |
This counts the support of topology phylogeny by the topologies in
phylogenies.
|
public static double compare(Phylogeny phylogeny, Phylogeny evaluator_phylogeny, boolean strip_evaluator_phylogeny, boolean update_support_in_phylogeny, boolean re_root)
public static void count(Phylogeny phylogeny, Phylogeny[] evaluator_phylogenies, boolean strip_evaluator_phylogenies, boolean verbose)
public static java.util.List<Phylogeny> count(Phylogeny phylogeny, Phylogeny[] evaluator_phylogenies, boolean strip_evaluator_phylogenies, double similarity_threshold, boolean verbose)
phylogeny
- the topology to be evaluatedevaluator_phylogenies
- the topologies used for evaluationstrip_evaluator_phylogenies
- set to true if phylogenies contains topologies with names not
present in phylogeny