public class GFF3FromUniprotBlastHits
extends java.lang.Object
Constructor | Description |
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GFF3FromUniprotBlastHits() |
Modifier and Type | Method | Description |
---|---|---|
static void |
main(java.lang.String[] args) |
|
void |
process(java.io.File xmlBlastHits,
double ecutoff,
java.util.LinkedHashMap<java.lang.String,GeneSequence> geneSequenceHashMap,
java.io.OutputStream gff3Output) |
|
void |
process(java.util.LinkedHashMap<java.lang.String,java.util.ArrayList<java.lang.String>> hits,
java.util.LinkedHashMap<java.lang.String,GeneSequence> geneSequenceHashMap,
java.io.OutputStream gff3Output) |
public void process(java.io.File xmlBlastHits, double ecutoff, java.util.LinkedHashMap<java.lang.String,GeneSequence> geneSequenceHashMap, java.io.OutputStream gff3Output) throws java.lang.Exception
java.lang.Exception
public void process(java.util.LinkedHashMap<java.lang.String,java.util.ArrayList<java.lang.String>> hits, java.util.LinkedHashMap<java.lang.String,GeneSequence> geneSequenceHashMap, java.io.OutputStream gff3Output) throws java.lang.Exception
java.lang.Exception
public static void main(java.lang.String[] args)