public final class DomainCountsDifferenceUtil
extends java.lang.Object
Modifier and Type | Class | Description |
---|---|---|
static class |
DomainCountsDifferenceUtil.COPY_CALCULATION_MODE |
Constructor | Description |
---|---|
DomainCountsDifferenceUtil() |
Modifier and Type | Method | Description |
---|---|---|
static void |
calculateCopyNumberDifferences(java.util.List<GenomeWideCombinableDomains> genomes,
java.util.SortedMap<Species,java.util.List<Protein>> protein_lists_per_species,
java.util.List<java.lang.String> high_copy_base_species,
java.util.List<java.lang.String> high_copy_target_species,
java.util.List<java.lang.String> low_copy_species,
int min_diff,
java.lang.Double factor,
java.io.File plain_output_dom,
java.io.File html_output_dom,
java.io.File html_output_dc,
java.util.Map<java.lang.String,java.util.List<GoId>> domain_id_to_go_ids_map,
java.util.Map<GoId,GoTerm> go_id_to_term_map,
java.io.File all_domains_go_ids_out_dom,
java.io.File passing_domains_go_ids_out_dom,
java.io.File proteins_file_base) |
public static void calculateCopyNumberDifferences(java.util.List<GenomeWideCombinableDomains> genomes, java.util.SortedMap<Species,java.util.List<Protein>> protein_lists_per_species, java.util.List<java.lang.String> high_copy_base_species, java.util.List<java.lang.String> high_copy_target_species, java.util.List<java.lang.String> low_copy_species, int min_diff, java.lang.Double factor, java.io.File plain_output_dom, java.io.File html_output_dom, java.io.File html_output_dc, java.util.Map<java.lang.String,java.util.List<GoId>> domain_id_to_go_ids_map, java.util.Map<GoId,GoTerm> go_id_to_term_map, java.io.File all_domains_go_ids_out_dom, java.io.File passing_domains_go_ids_out_dom, java.io.File proteins_file_base) throws java.io.IOException
java.io.IOException