protected class CeCPUserArgumentProcessor.CeCPStartupParams extends CeUserArgumentProcessor.CeStartupParams
Modifier and Type | Field | Description |
---|---|---|
protected CECPParameters.DuplicationHint |
duplicationHint |
|
protected java.lang.Integer |
minCPLength |
gapExtension, gapOpen, maxGapSize, maxOptRMSD, scoringStrategy, showAFPRanges, winSize
Constructor | Description |
---|---|
CeCPStartupParams() |
Modifier and Type | Method | Description |
---|---|---|
CECPParameters.DuplicationHint |
getDuplicationHint() |
|
java.lang.Integer |
getMinCPLength() |
|
void |
setDuplicationHint(CECPParameters.DuplicationHint duplicationHint) |
|
void |
setMinCPLength(java.lang.Integer minCPLength) |
|
java.lang.String |
toString() |
getGapExtension, getGapOpen, getMaxGapSize, getMaxOptRMSD, getScoringStrategy, getWinSize, isShowAFPRanges, setGapExtension, setGapOpen, setMaxGapSize, setMaxOptRMSD, setScoringStrategy, setShowAFPRanges, setWinSize
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
getAlignPairs, getCacheFilePath, getFile1, getFile2, getNrCPU, getOutFile, getPdb1, getPdb2, getPdbFilePath, getSaveOutputDir, getSearchFile, getShowDBresult, isAutoFetch, isDomainSplit, isOutputPDB, isPdbDirSplit, isPrintCE, isPrintFatCat, isPrintXML, isShow3d, isShowMenu, setAlignPairs, setAutoFetch, setCacheFilePath, setDomainSplit, setFile1, setFile2, setNrCPU, setOutFile, setOutputPDB, setPdb1, setPdb2, setPdbDirSplit, setPdbFilePath, setPrintCE, setPrintFatCat, setPrintXML, setSaveOutputDir, setSearchFile, setShow3d, setShowDBresult, setShowMenu
protected CECPParameters.DuplicationHint duplicationHint
protected java.lang.Integer minCPLength
public CECPParameters.DuplicationHint getDuplicationHint()
public void setDuplicationHint(CECPParameters.DuplicationHint duplicationHint)
public java.lang.Integer getMinCPLength()
public void setMinCPLength(java.lang.Integer minCPLength)
public java.lang.String toString()
toString
in class CeUserArgumentProcessor.CeStartupParams