Modifier and Type | Field | Description |
---|---|---|
static java.lang.String |
HMMER_SERVICE |
Constructor | Description |
---|---|
RemoteHmmerScan() |
Modifier and Type | Method | Description |
---|---|---|
java.util.SortedSet<HmmerResult> |
scan(ProteinSequence sequence) |
|
java.util.SortedSet<HmmerResult> |
scan(ProteinSequence sequence,
java.net.URL serviceLocation) |
Scans a protein sequence for Pfam profile matches.
|
public static final java.lang.String HMMER_SERVICE
public java.util.SortedSet<HmmerResult> scan(ProteinSequence sequence) throws java.io.IOException
public java.util.SortedSet<HmmerResult> scan(ProteinSequence sequence, java.net.URL serviceLocation) throws java.io.IOException
sequence
- serviceLocation
- java.io.IOException