public class QuatSymmetryResults
extends java.lang.Object
Constructor | Description |
---|---|
QuatSymmetryResults(Subunits subunits,
HelixLayers helixLayers,
java.lang.String method) |
|
QuatSymmetryResults(Subunits subunits,
RotationGroup rotationGroup,
java.lang.String method) |
Modifier and Type | Method | Description |
---|---|---|
double |
getAverageTraceRmsd() |
Deprecated.
use
getScores() instead. |
double |
getAverageTraceTmScoreMin() |
Deprecated.
use
getScores() instead. |
HelixLayers |
getHelixLayers() |
|
java.lang.String |
getMethod() |
Returns name of method used for symmetry perception.
|
int |
getNucleicAcidChainCount() |
|
RotationGroup |
getRotationGroup() |
Returns rotation group (point group) information representing rotational quaternary symmetry,
see http://en.wikipedia.org/wiki/Rotation_group_SO(3)
|
QuatSymmetryScores |
getScores() |
|
double |
getSequenceIdentityThreshold() |
|
Subunits |
getSubunits() |
Returns protein subunit information that was used to determine symmetry information
|
java.lang.String |
getSymmetry() |
Returns the symmetry group.
|
boolean |
isLocal() |
Return true
|
boolean |
isPreferredResult() |
|
void |
setLocal(boolean local) |
|
void |
setPreferredResult(boolean preferredResult) |
|
void |
setSequenceIdentityThreshold(double sequenceIdentityThreshold) |
|
java.lang.String |
toString() |
public QuatSymmetryResults(Subunits subunits, RotationGroup rotationGroup, java.lang.String method)
public QuatSymmetryResults(Subunits subunits, HelixLayers helixLayers, java.lang.String method)
public Subunits getSubunits()
public RotationGroup getRotationGroup()
public HelixLayers getHelixLayers()
public java.lang.String getMethod()
public java.lang.String getSymmetry()
public QuatSymmetryScores getScores()
@Deprecated public double getAverageTraceRmsd()
getScores()
instead.@Deprecated public double getAverageTraceTmScoreMin()
getScores()
instead.public int getNucleicAcidChainCount()
public double getSequenceIdentityThreshold()
public void setSequenceIdentityThreshold(double sequenceIdentityThreshold)
public java.lang.String toString()
toString
in class java.lang.Object
public boolean isLocal()
public void setLocal(boolean local)
public boolean isPreferredResult()
public void setPreferredResult(boolean preferredResult)