SequenceDatabaseEntry
public final class EbiDbEntry extends java.lang.Object implements SequenceDatabaseEntry
Modifier and Type | Method | Description |
---|---|---|
java.lang.Object |
clone() |
|
static SequenceDatabaseEntry |
createInstanceFromPlainTextForRefSeq(java.util.List<java.lang.String> lines) |
|
java.lang.String |
getAccession() |
|
java.util.SortedSet<Annotation> |
getAnnotations() |
|
java.lang.String |
getChromosome() |
|
java.util.SortedSet<Accession> |
getCrossReferences() |
|
java.lang.String |
getGeneName() |
|
java.util.SortedSet<GoTerm> |
getGoTerms() |
|
java.lang.String |
getMap() |
|
MolecularSequence |
getMolecularSequence() |
|
java.lang.String |
getProvider() |
|
java.lang.String |
getSequenceName() |
|
java.lang.String |
getSequenceSymbol() |
|
java.lang.String |
getTaxonomyIdentifier() |
|
java.lang.String |
getTaxonomyScientificName() |
|
boolean |
isEmpty() |
|
void |
setProvider(java.lang.String provider) |
public java.lang.Object clone() throws java.lang.CloneNotSupportedException
clone
in class java.lang.Object
java.lang.CloneNotSupportedException
public java.lang.String getAccession()
getAccession
in interface SequenceDatabaseEntry
public java.util.SortedSet<Annotation> getAnnotations()
getAnnotations
in interface SequenceDatabaseEntry
public java.lang.String getChromosome()
getChromosome
in interface SequenceDatabaseEntry
public java.util.SortedSet<Accession> getCrossReferences()
getCrossReferences
in interface SequenceDatabaseEntry
public java.lang.String getGeneName()
getGeneName
in interface SequenceDatabaseEntry
public java.util.SortedSet<GoTerm> getGoTerms()
getGoTerms
in interface SequenceDatabaseEntry
public java.lang.String getMap()
getMap
in interface SequenceDatabaseEntry
public java.lang.String getProvider()
getProvider
in interface SequenceDatabaseEntry
public java.lang.String getSequenceName()
getSequenceName
in interface SequenceDatabaseEntry
public java.lang.String getSequenceSymbol()
getSequenceSymbol
in interface SequenceDatabaseEntry
public java.lang.String getTaxonomyIdentifier()
getTaxonomyIdentifier
in interface SequenceDatabaseEntry
public java.lang.String getTaxonomyScientificName()
getTaxonomyScientificName
in interface SequenceDatabaseEntry
public boolean isEmpty()
isEmpty
in interface SequenceDatabaseEntry
public void setProvider(java.lang.String provider)
public static SequenceDatabaseEntry createInstanceFromPlainTextForRefSeq(java.util.List<java.lang.String> lines)
public MolecularSequence getMolecularSequence()
getMolecularSequence
in interface SequenceDatabaseEntry