java.lang.Cloneable
public class UniqueSequenceList
extends java.lang.Object
implements java.lang.Cloneable
Constructor | Description |
---|---|
UniqueSequenceList(Atom[] cAlphaAtoms,
java.lang.String chainId,
int modelNumber,
int structureId,
java.lang.String seqResSequence) |
Modifier and Type | Method | Description |
---|---|---|
java.lang.Object |
clone() |
|
java.util.List<java.lang.Integer> |
getAlignment1() |
|
java.util.List<java.lang.Integer> |
getAlignment2() |
|
Atom[] |
getCalphaAtoms() |
|
java.lang.String |
getChainId() |
|
int |
getModelNumber() |
|
java.lang.String |
getSeqResSequence() |
|
static java.lang.String |
getSequenceString(Atom[] caAlphaAtoms) |
|
int |
getStructureId() |
|
boolean |
isMatch(Atom[] caAlphaAtoms) |
Return true is the sequence and residues numbers of the passed in array of
atoms matches those of this unique sequence list
|
void |
setAlignment1(java.util.List<java.lang.Integer> alignment1) |
|
void |
setAlignment2(java.util.List<java.lang.Integer> alignment2) |
|
void |
setSequenceString(java.lang.String sequenceString) |
|
java.lang.String |
toString() |
public UniqueSequenceList(Atom[] cAlphaAtoms, java.lang.String chainId, int modelNumber, int structureId, java.lang.String seqResSequence)
public boolean isMatch(Atom[] caAlphaAtoms)
caAlphaAtoms
- public java.lang.String getChainId()
public int getModelNumber()
public int getStructureId()
public Atom[] getCalphaAtoms()
public java.lang.String getSeqResSequence()
public void setSequenceString(java.lang.String sequenceString)
sequenceString
- the sequenceString to setpublic java.util.List<java.lang.Integer> getAlignment1()
public void setAlignment1(java.util.List<java.lang.Integer> alignment1)
alignment1
- the alignment1 to setpublic java.util.List<java.lang.Integer> getAlignment2()
public void setAlignment2(java.util.List<java.lang.Integer> alignment2)
alignment2
- the alignment2 to setpublic java.lang.Object clone()
clone
in class java.lang.Object
public static java.lang.String getSequenceString(Atom[] caAlphaAtoms)
public java.lang.String toString()
toString
in class java.lang.Object