public class ModificationLinkage
extends java.lang.Object
Constructor | Description |
---|---|
ModificationLinkage(java.util.List<Component> components,
int indexOfComponent1,
int indexOfComponent2) |
|
ModificationLinkage(java.util.List<Component> components,
int indexOfComponent1,
java.lang.String pdbNameOfAtomsOnComponent1,
int indexOfComponent2,
java.lang.String pdbNameOfAtomsOnComponent2) |
|
ModificationLinkage(java.util.List<Component> components,
int indexOfComponent1,
java.util.List<java.lang.String> pdbNameOfPotentialAtomsOnComponent1,
int indexOfComponent2,
java.util.List<java.lang.String> pdbNameOfPotentialAtomsOnComponent2) |
|
ModificationLinkage(java.util.List<Component> components,
int indexOfComponent1,
java.util.List<java.lang.String> pdbNameOfPotentialAtomsOnComponent1,
java.lang.String labelOfAtomOnComponent1,
int indexOfComponent2,
java.util.List<java.lang.String> pdbNameOfPotentialAtomsOnComponent2,
java.lang.String labelOfAtomOnComponent2) |
Modifier and Type | Method | Description |
---|---|---|
Component |
getComponent1() |
|
Component |
getComponent2() |
|
int |
getIndexOfComponent1() |
|
int |
getIndexOfComponent2() |
|
java.lang.String |
getLabelOfAtomOnComponent1() |
|
java.lang.String |
getLabelOfAtomOnComponent2() |
|
java.util.List<java.lang.String> |
getPDBNameOfPotentialAtomsOnComponent1() |
|
java.util.List<java.lang.String> |
getPDBNameOfPotentialAtomsOnComponent2() |
|
java.lang.String |
toString() |
public ModificationLinkage(java.util.List<Component> components, int indexOfComponent1, int indexOfComponent2)
components
- Component
s involved in a modification.indexOfComponent1
- index of the first component.indexOfComponent2
- index of the second component.public ModificationLinkage(java.util.List<Component> components, int indexOfComponent1, java.lang.String pdbNameOfAtomsOnComponent1, int indexOfComponent2, java.lang.String pdbNameOfAtomsOnComponent2)
components
- Component
s involved in a modification.indexOfComponent1
- index of the first component.labelOfAtomOnComponent1
- label of the atom on the first
component.indexOfComponent2
- index of the second component.labelOfAtomOnComponent2
- label of the atom on the second
component.public ModificationLinkage(java.util.List<Component> components, int indexOfComponent1, java.util.List<java.lang.String> pdbNameOfPotentialAtomsOnComponent1, int indexOfComponent2, java.util.List<java.lang.String> pdbNameOfPotentialAtomsOnComponent2)
components
- Component
s involved in a modification.indexOfComponent1
- index of the first component.labelOfAtomOnComponent1
- label of the atom on the first
component.indexOfComponent2
- index of the second component.labelOfAtomOnComponent2
- label of the atom on the second
component.public ModificationLinkage(java.util.List<Component> components, int indexOfComponent1, java.util.List<java.lang.String> pdbNameOfPotentialAtomsOnComponent1, java.lang.String labelOfAtomOnComponent1, int indexOfComponent2, java.util.List<java.lang.String> pdbNameOfPotentialAtomsOnComponent2, java.lang.String labelOfAtomOnComponent2)
components
- Component
s involved in a modification.indexOfComponent1
- index of the first component.pdbNameOfPotentialAtomsOnComponent1
- a list of PDB names of
potential atoms on the first component.labelOfAtomOnComponent1
- label of the atom on the first
component.indexOfComponent2
- index of the second component.pdbNameOfPotentialAtomsOnComponent2
- a list of PDB names of
potential atoms on the second component.labelOfAtomOnComponent2
- label of the atom on the second
component.public int getIndexOfComponent1()
public int getIndexOfComponent2()
public Component getComponent1()
public Component getComponent2()
public java.util.List<java.lang.String> getPDBNameOfPotentialAtomsOnComponent1()
public java.util.List<java.lang.String> getPDBNameOfPotentialAtomsOnComponent2()
public java.lang.String getLabelOfAtomOnComponent1()
public java.lang.String getLabelOfAtomOnComponent2()
public java.lang.String toString()
toString
in class java.lang.Object