public final class Mafft extends MsaInferrer
Modifier and Type | Method | Description |
---|---|---|
static MsaInferrer |
createInstance(java.lang.String path_to_prg) |
|
static java.lang.String |
getDefaultParameters() |
|
java.lang.String |
getErrorDescription() |
|
int |
getExitCode() |
|
Msa |
infer(java.io.File path_to_input_seqs,
java.util.List<java.lang.String> opts) |
|
Msa |
infer(java.util.List<MolecularSequence> seqs,
java.util.List<java.lang.String> opts) |
clone, isInstalled
public static MsaInferrer createInstance(java.lang.String path_to_prg) throws java.io.IOException
java.io.IOException
public static java.lang.String getDefaultParameters()
public java.lang.String getErrorDescription()
getErrorDescription
in class MsaInferrer
public int getExitCode()
getExitCode
in class MsaInferrer
public Msa infer(java.util.List<MolecularSequence> seqs, java.util.List<java.lang.String> opts) throws java.io.IOException, java.lang.InterruptedException
infer
in class MsaInferrer
java.io.IOException
java.lang.InterruptedException
public Msa infer(java.io.File path_to_input_seqs, java.util.List<java.lang.String> opts) throws java.io.IOException, java.lang.InterruptedException
infer
in class MsaInferrer
java.io.IOException
java.lang.InterruptedException