public class CoxInfo
extends java.lang.Object
Modifier and Type | Field | Description |
---|---|---|
ExpressionFigure |
ef |
|
KaplanMeierFigure |
kmf |
Constructor | Description |
---|---|
CoxInfo() |
Modifier and Type | Method | Description |
---|---|---|
void |
dump() |
|
static java.lang.String |
fmt(java.lang.Double d,
int precision,
int pad) |
|
java.lang.String |
fmtpl(java.lang.String d,
int pad) |
Pad left a string with spaces
|
java.lang.String |
fmtpr(java.lang.String d,
int pad) |
|
double |
getChiSquare() |
|
CoxCoefficient |
getCoefficient(java.lang.String name) |
|
java.util.LinkedHashMap<java.lang.String,CoxCoefficient> |
getCoefficientsList() |
|
java.lang.String |
getCoefficientText(boolean header,
java.lang.String beginLine,
java.lang.String beginCell,
java.lang.String endCell,
java.lang.String endLine) |
|
double |
getDegreeFreedom() |
|
double[][] |
getImat() |
|
java.util.LinkedHashMap<java.lang.String,java.lang.String> |
getMetaDataFilter() |
|
double[][] |
getNaive_imat() |
|
double[][] |
getNaiveVariance() |
|
int |
getNumberCoefficients() |
|
double |
getOverallModelFitPvalue() |
|
java.lang.Double |
getRscore() |
|
java.lang.Double |
getRscoreLogrankTestpvalue() |
|
java.lang.Double |
getScoreLogrankTest() |
|
java.lang.Double |
getScoreLogrankTestpvalue() |
|
java.util.ArrayList<SurvivalInfo> |
getSurvivalInfoList() |
|
double[][] |
getVariableResiduals() |
|
double[][] |
getVariance() |
|
WaldTestInfo |
getWaldTestInfo() |
|
double[] |
getWeighted() |
|
void |
setCoefficient(java.lang.String name,
CoxCoefficient coefficient) |
|
void |
setDegreeFreedom(double degreeFreedom) |
|
void |
setMetaDataFilter(java.util.LinkedHashMap<java.lang.String,java.lang.String> metaDataFilter) |
|
void |
setNaiveVariance(double[][] var) |
|
void |
setRscore(java.lang.Double rscore) |
|
void |
setRscoreLogrankTestpvalue(java.lang.Double rscoreLogrankTestpvalue) |
|
void |
setScoreLogrankTest(java.lang.Double scoreLogrankTest) |
|
void |
setScoreLogrankTestpvalue(java.lang.Double scoreLogrankTestpvalue) |
|
void |
setSurvivalInfoList(java.util.ArrayList<SurvivalInfo> data) |
|
void |
setVariableResiduals(double[][] rr) |
|
void |
setVariance(double[][] var) |
|
void |
setWaldTestInfo(WaldTestInfo waldTestInfo) |
|
java.lang.String |
toString() |
|
java.lang.String |
toString(java.lang.String beginLine,
java.lang.String del,
java.lang.String endLine) |
public KaplanMeierFigure kmf
public ExpressionFigure ef
public java.util.ArrayList<SurvivalInfo> getSurvivalInfoList()
public void setVariance(double[][] var) throws java.lang.Exception
var
- java.lang.Exception
public double[][] getVariance()
public void setNaiveVariance(double[][] var) throws java.lang.Exception
var
- java.lang.Exception
public double[][] getNaiveVariance()
public void setSurvivalInfoList(java.util.ArrayList<SurvivalInfo> data)
data
- public double[] getWeighted()
public double[][] getVariableResiduals()
public void setVariableResiduals(double[][] rr)
rr
- public int getNumberCoefficients()
public CoxCoefficient getCoefficient(java.lang.String name)
name
- public void setCoefficient(java.lang.String name, CoxCoefficient coefficient)
name
- coefficient
- public java.lang.String getCoefficientText(boolean header, java.lang.String beginLine, java.lang.String beginCell, java.lang.String endCell, java.lang.String endLine)
header
- beginLine
- beginCell
- endCell
- endLine
- public static java.lang.String fmt(java.lang.Double d, int precision, int pad)
d
- precision
- pad
- public void dump()
public java.lang.String fmtpr(java.lang.String d, int pad)
d
- pad
- public java.lang.String fmtpl(java.lang.String d, int pad)
d
- pad
- public java.lang.String toString()
toString
in class java.lang.Object
public java.lang.String toString(java.lang.String beginLine, java.lang.String del, java.lang.String endLine)
beginLine
- del
- endLine
- public double getChiSquare()
public double getDegreeFreedom()
public double getOverallModelFitPvalue()
public java.lang.Double getRscore()
public void setRscore(java.lang.Double rscore)
rscore
- the rscore to setpublic java.lang.Double getRscoreLogrankTestpvalue()
public void setRscoreLogrankTestpvalue(java.lang.Double rscoreLogrankTestpvalue)
rscoreLogrankTestpvalue
- the rscoreLogrankTestpvalue to setpublic java.lang.Double getScoreLogrankTest()
public void setScoreLogrankTest(java.lang.Double scoreLogrankTest)
scoreLogrankTest
- the scoreLogrankTest to setpublic java.lang.Double getScoreLogrankTestpvalue()
public void setScoreLogrankTestpvalue(java.lang.Double scoreLogrankTestpvalue)
scoreLogrankTestpvalue
- the scoreLogrankTestpvalue to setpublic java.util.LinkedHashMap<java.lang.String,java.lang.String> getMetaDataFilter()
public void setMetaDataFilter(java.util.LinkedHashMap<java.lang.String,java.lang.String> metaDataFilter)
metaDataFilter
- the metaDataFilter to setpublic java.util.LinkedHashMap<java.lang.String,CoxCoefficient> getCoefficientsList()
public WaldTestInfo getWaldTestInfo()
public double[][] getImat()
public double[][] getNaive_imat()
public void setDegreeFreedom(double degreeFreedom)
degreeFreedom
- the degreeFreedom to setpublic void setWaldTestInfo(WaldTestInfo waldTestInfo)
waldTestInfo
- the waldTestInfo to set