public class PairwiseAlignment
extends java.lang.Object
Constructor | Description |
---|---|
PairwiseAlignment(SequenceAlignmentCluster cluster1,
SequenceAlignmentCluster cluster2) |
Modifier and Type | Method | Description |
---|---|---|
int[][][] |
getAlignment() |
|
double |
getAlignmentLengthFraction() |
|
SequenceAlignmentCluster |
getCluster1() |
|
SequenceAlignmentCluster |
getCluster2() |
|
double |
getRmsd() |
|
double |
getSequenceIdentity() |
|
void |
setAlignment(int[][][] alignment) |
|
void |
setAlignmentLengthFraction(double alignmentLengthFraction) |
|
void |
setRmsd(double rmsd) |
|
void |
setSequenceIdentity(double sequenceIdentity) |
|
java.lang.String |
toString() |
public PairwiseAlignment(SequenceAlignmentCluster cluster1, SequenceAlignmentCluster cluster2)
public SequenceAlignmentCluster getCluster1()
public SequenceAlignmentCluster getCluster2()
public double getAlignmentLengthFraction()
public double getSequenceIdentity()
public double getRmsd()
public int[][][] getAlignment()
public void setAlignmentLengthFraction(double alignmentLengthFraction)
public void setSequenceIdentity(double sequenceIdentity)
public void setRmsd(double rmsd)
public void setAlignment(int[][][] alignment)
public java.lang.String toString()
toString
in class java.lang.Object