S
- each Sequence
of the alignment pair is of type SC
- each element of an AlignedSequence
is a Compound
of type CAligner<S,C>
, PairwiseSequenceScorer<S,C>
, Scorer
AbstractPairwiseSequenceAligner
, AnchoredPairwiseSequenceAligner
, GuanUberbacher
, NeedlemanWunsch
, SmithWaterman
public interface PairwiseSequenceAligner<S extends Sequence<C>,C extends Compound> extends Aligner<S,C>, PairwiseSequenceScorer<S,C>
Modifier and Type | Method | Description |
---|---|---|
SequencePair<S,C> |
getPair() |
Returns sequence alignment pair.
|
getComputationTime, getProfile
getQuery, getTarget
getDistance, getDistance, getMaxScore, getMinScore, getScore, getSimilarity, getSimilarity
SequencePair<S,C> getPair()