public class SequenceWriter
extends java.lang.Object
Modifier and Type | Class | Description |
---|---|---|
static class |
SequenceWriter.SEQ_FORMAT |
Constructor | Description |
---|---|
SequenceWriter() |
Modifier and Type | Method | Description |
---|---|---|
static java.lang.StringBuilder |
toFasta(java.lang.String name,
java.lang.String mol_seq,
int width) |
|
static java.lang.StringBuilder |
toFasta(MolecularSequence seq,
int width) |
|
static void |
toFasta(MolecularSequence seq,
java.io.Writer w,
int width) |
|
static void |
writeSeqs(java.util.List<MolecularSequence> seqs,
java.io.File file,
SequenceWriter.SEQ_FORMAT format,
int width) |
|
static void |
writeSeqs(java.util.List<MolecularSequence> seqs,
java.io.Writer writer,
SequenceWriter.SEQ_FORMAT format,
int width) |
public static java.lang.StringBuilder toFasta(MolecularSequence seq, int width)
public static java.lang.StringBuilder toFasta(java.lang.String name, java.lang.String mol_seq, int width)
public static void toFasta(MolecularSequence seq, java.io.Writer w, int width) throws java.io.IOException
java.io.IOException
public static void writeSeqs(java.util.List<MolecularSequence> seqs, java.io.File file, SequenceWriter.SEQ_FORMAT format, int width) throws java.io.IOException
java.io.IOException
public static void writeSeqs(java.util.List<MolecularSequence> seqs, java.io.Writer writer, SequenceWriter.SEQ_FORMAT format, int width) throws java.io.IOException
java.io.IOException