public class FastaWriter<S extends Sequence<?>,C extends Compound>
extends java.lang.Object
Constructor | Description |
---|---|
FastaWriter(java.io.OutputStream os,
java.util.Collection<S> sequences,
FastaHeaderFormatInterface<S,C> headerFormat) |
Use default line length of 60
|
FastaWriter(java.io.OutputStream os,
java.util.Collection<S> sequences,
FastaHeaderFormatInterface<S,C> headerFormat,
int lineLength) |
Set custom lineLength
|
Modifier and Type | Method | Description |
---|---|---|
int |
getLineLength() |
|
static void |
main(java.lang.String[] args) |
|
void |
process() |
|
void |
setLineLength(int lineLength) |
|
void |
setLineSeparator(java.lang.String lineSeparator) |
Allow an override of operating system line separator for programs that needs a specific CRLF or CR or LF option
|
public FastaWriter(java.io.OutputStream os, java.util.Collection<S> sequences, FastaHeaderFormatInterface<S,C> headerFormat)
os
- sequences
- headerFormat
- public FastaWriter(java.io.OutputStream os, java.util.Collection<S> sequences, FastaHeaderFormatInterface<S,C> headerFormat, int lineLength)
os
- sequences
- headerFormat
- lineLength
- public void setLineSeparator(java.lang.String lineSeparator)
lineSeparator
- public void process() throws java.io.IOException
java.io.IOException
public static void main(java.lang.String[] args)
public int getLineLength()
public void setLineLength(int lineLength)
lineLength
- the lineLength to set