BlastTabularParser
, BlastXMLParser
public interface ResultFactory
Modifier and Type | Method | Description |
---|---|---|
java.util.List<Result> |
createObjects(double maxEScore) |
Launch the parsing and get back a list of Result objects representing the
search result in the specified file.
|
java.util.List<java.lang.String> |
getFileExtensions() |
returns a list of file extensions associated to this ResultFactory
|
void |
setDatabaseReferences(java.util.List<Sequence> sequences) |
Specify the collection of sequences objects used as database in the Search run.
|
void |
setFile(java.io.File f) |
|
void |
setQueryReferences(java.util.List<Sequence> sequences) |
Specify the collection of sequences objects used as queries in the Search run.
|
void |
storeObjects(java.util.List<Result> results) |
The factory that implements this method will be able to save the Search results
to a file in the same format that it is able to read.
|
java.util.List<java.lang.String> getFileExtensions()
void setFile(java.io.File f)
java.util.List<Result> createObjects(double maxEScore) throws java.io.IOException, java.text.ParseException
maxEScore
- java.lang.Exception
java.io.IOException
java.text.ParseException
void storeObjects(java.util.List<Result> results) throws java.io.IOException, java.text.ParseException
results
- java.lang.Exception
java.io.IOException
java.text.ParseException
void setQueryReferences(java.util.List<Sequence> sequences)
sequences
- void setDatabaseReferences(java.util.List<Sequence> sequences)
sequences
-