java.lang.Iterable<NucleotideCompound>
, Accessioned
, Sequence<NucleotideCompound>
public class ExonSequence extends DNASequence
AbstractSequence.AnnotationType
DNASequence.DNAType
Constructor | Description |
---|---|
ExonSequence(GeneSequence parentGeneSequence,
int bioBegin,
int bioEnd) |
Need a parent gene sequence and the bioBegin and bioEnd.
|
Modifier and Type | Method | Description |
---|---|---|
int |
getLength() |
Returns the length of the Sequence
|
addFeature, addFeature, addNote, countCompounds, getAccession, getAnnotationType, getAsList, getBioBegin, getBioEnd, getCompoundAt, getCompoundSet, getDatabaseReferences, getDescription, getFeatureRetriever, getFeatures, getFeatures, getFeatures, getFeaturesByType, getFeaturesKeyWord, getIndexOf, getInverse, getLastIndexOf, getNotesList, getOriginalHeader, getParentSequence, getProxySequenceReader, getSequenceAsString, getSequenceAsString, getSequenceScore, getSource, getSubSequence, getTaxonomy, getUserCollection, iterator, removeFeature, removeNote, setAccession, setAnnotationType, setBioBegin, setBioEnd, setCompoundSet, setDatabaseReferences, setDescription, setFeatureRetriever, setFeaturesKeyWord, setNotesList, setOriginalHeader, setParentSequence, setProxySequenceReader, setSequenceScore, setSource, setTaxonomy, setUserCollection, toString
getComplement, getDNAType, getGCCount, getReverse, getReverseComplement, getRNASequence, getRNASequence, getRNASequence, getRNASequence, main, setDNAType
public ExonSequence(GeneSequence parentGeneSequence, int bioBegin, int bioEnd)
parentGeneSequence
- bioBegin
- bioEnd
- public int getLength()
Sequence
getLength
in interface Sequence<NucleotideCompound>
getLength
in class AbstractSequence<NucleotideCompound>