public class FastaParser
extends java.lang.Object
Modifier and Type | Field | Description |
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static java.util.regex.Pattern |
FASTA_DESC_LINE |
Constructor | Description |
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FastaParser() |
Modifier and Type | Method | Description |
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static boolean |
isLikelyFasta(java.io.File f) |
|
static boolean |
isLikelyFasta(java.io.InputStream is) |
|
static void |
main(java.lang.String[] args) |
|
static java.util.List<MolecularSequence> |
parse(java.io.File f) |
|
static java.util.List<MolecularSequence> |
parse(java.io.InputStream is) |
|
static Msa |
parseMsa(byte[] bytes) |
|
static Msa |
parseMsa(java.io.File f) |
|
static Msa |
parseMsa(java.io.InputStream is) |
|
static Msa |
parseMsa(java.lang.String s) |
public static void main(java.lang.String[] args)
public static boolean isLikelyFasta(java.io.File f) throws java.io.IOException
java.io.IOException
public static boolean isLikelyFasta(java.io.InputStream is) throws java.io.IOException
java.io.IOException
public static Msa parseMsa(java.io.File f) throws java.io.IOException
java.io.IOException
public static Msa parseMsa(java.io.InputStream is) throws java.io.IOException
java.io.IOException
public static Msa parseMsa(java.lang.String s) throws java.io.IOException
java.io.IOException
public static Msa parseMsa(byte[] bytes) throws java.io.IOException
java.io.IOException
public static java.util.List<MolecularSequence> parse(java.io.File f) throws java.io.IOException
java.io.IOException
public static java.util.List<MolecularSequence> parse(java.io.InputStream is) throws java.io.IOException
java.io.IOException