protected static class SmithWatermanUserArgumentProcessor.SmithWatermanStartupParams extends StartupParameters
Constructor | Description |
---|---|
SmithWatermanStartupParams() |
Modifier and Type | Method | Description |
---|---|---|
short |
getGapExtend() |
|
short |
getGapOpen() |
|
void |
setGapExtend(short gapExtend) |
|
void |
setGapOpen(short gapOpen) |
|
java.lang.String |
toString() |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
getAlignPairs, getCacheFilePath, getFile1, getFile2, getNrCPU, getOutFile, getPdb1, getPdb2, getPdbFilePath, getSaveOutputDir, getSearchFile, getShowDBresult, isAutoFetch, isDomainSplit, isOutputPDB, isPdbDirSplit, isPrintCE, isPrintFatCat, isPrintXML, isShow3d, isShowMenu, setAlignPairs, setAutoFetch, setCacheFilePath, setDomainSplit, setFile1, setFile2, setNrCPU, setOutFile, setOutputPDB, setPdb1, setPdb2, setPdbDirSplit, setPdbFilePath, setPrintCE, setPrintFatCat, setPrintXML, setSaveOutputDir, setSearchFile, setShow3d, setShowDBresult, setShowMenu
public short getGapOpen()
public void setGapOpen(short gapOpen)
public short getGapExtend()
public void setGapExtend(short gapExtend)
public java.lang.String toString()
toString
in class StartupParameters