Edit.AbstractEdit<C extends Compound>, Edit.Delete<C extends Compound>, Edit.Insert<C extends Compound>, Edit.Substitute<C extends Compound>
Constructor | Description |
---|---|
Delete(int position) |
|
Delete(int start,
int end) |
Modifier and Type | Method | Description |
---|---|---|
protected Sequence<C> |
getFivePrime(Sequence<C> editingSequence) |
Should return the 5-prime end of the given Sequence according to
the edit.
|
protected int |
getRealEnd() |
|
protected int |
getRealStart() |
|
protected Sequence<C> |
getThreePrime(Sequence<C> editingSequence) |
Should return the 3-prime end of the given Sequence according to
the edit.
|
edit, getEmptySequence, getEnd, getStart, getTargetSequence, setSequence, setStringSequence
protected int getRealStart()
protected int getRealEnd()
protected Sequence<C> getFivePrime(Sequence<C> editingSequence)
Edit.AbstractEdit
getFivePrime
in class Edit.AbstractEdit<C extends Compound>
protected Sequence<C> getThreePrime(Sequence<C> editingSequence)
Edit.AbstractEdit
getThreePrime
in class Edit.AbstractEdit<C extends Compound>