public class QuatSuperpositionScorer
extends java.lang.Object
Constructor | Description |
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QuatSuperpositionScorer() |
Modifier and Type | Method | Description |
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static QuatSymmetryScores |
calcScores(Subunits subunits,
javax.vecmath.Matrix4d transformation,
java.util.List<java.lang.Integer> permutation) |
Returns minimum, mean, and maximum RMSD and TM-Score for two superimposed sets of subunits
TM score: Yang Zhang and Jeffrey Skolnick, PROTEINS: Structure, Function, and Bioinformatics 57:702–710 (2004)
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public static QuatSymmetryScores calcScores(Subunits subunits, javax.vecmath.Matrix4d transformation, java.util.List<java.lang.Integer> permutation)
subunits
- subunits to be scoredtransformation
- transformation matrixpermutations
- permutation that determines which subunits are superposed