public class MultipleAlignmentXMLConverter
extends java.lang.Object
To convert a MultipleAlignment to an XML String use the
MultipleAlignmentWriter.toXML(MultipleAlignmentEnsemble)
method.
Constructor | Description |
---|---|
MultipleAlignmentXMLConverter() |
Modifier and Type | Method | Description |
---|---|---|
static void |
printXMLalignment(PrettyXMLWriter xml,
MultipleAlignment msa) |
|
static void |
printXMLblock(PrettyXMLWriter xml,
Block b) |
|
static void |
printXMLblockSet(PrettyXMLWriter xml,
BlockSet bs) |
|
static void |
printXMLensemble(PrettyXMLWriter xml,
MultipleAlignmentEnsemble ensemble) |
|
static void |
printXMLheader(PrettyXMLWriter xml,
MultipleAlignmentEnsemble ensemble) |
|
static void |
printXMLmatrix4d(PrettyXMLWriter xml,
javax.vecmath.Matrix4d transform) |
|
static void |
printXMLscoresCache(PrettyXMLWriter xml,
ScoresCache cache) |
public static void printXMLensemble(PrettyXMLWriter xml, MultipleAlignmentEnsemble ensemble) throws java.io.IOException
java.io.IOException
public static void printXMLalignment(PrettyXMLWriter xml, MultipleAlignment msa) throws java.io.IOException
java.io.IOException
public static void printXMLblockSet(PrettyXMLWriter xml, BlockSet bs) throws java.io.IOException
java.io.IOException
public static void printXMLblock(PrettyXMLWriter xml, Block b) throws java.io.IOException
java.io.IOException
public static void printXMLmatrix4d(PrettyXMLWriter xml, javax.vecmath.Matrix4d transform) throws java.io.IOException
java.io.IOException
public static void printXMLscoresCache(PrettyXMLWriter xml, ScoresCache cache) throws java.io.IOException
java.io.IOException
public static void printXMLheader(PrettyXMLWriter xml, MultipleAlignmentEnsemble ensemble) throws java.io.IOException
java.io.IOException