public final class PhylogenyDataUtil
extends java.lang.Object
Modifier and Type | Field | Description |
---|---|---|
static double |
BRANCH_LENGTH_DEFAULT |
Value of -99.0 is used as default value.
|
Constructor | Description |
---|---|
PhylogenyDataUtil() |
Modifier and Type | Method | Description |
---|---|---|
static void |
appendClose(java.io.Writer w,
java.lang.String element_name) |
|
static void |
appendElement(java.io.Writer w,
java.lang.String element_name,
java.lang.String value) |
|
static void |
appendElement(java.io.Writer w,
java.lang.String element_name,
java.lang.String value,
java.lang.String indentation) |
|
static void |
appendElement(java.io.Writer w,
java.lang.String element_name,
java.lang.String value,
java.lang.String attribute_name,
java.lang.String attribute_value) |
|
static void |
appendElement(java.io.Writer w,
java.lang.String element_name,
java.lang.String value,
java.lang.String attribute_name,
java.lang.String attribute_value,
java.lang.String indentation) |
|
static void |
appendElement(java.io.Writer w,
java.lang.String element_name,
java.lang.String value,
java.lang.String attribute1_name,
java.lang.String attribute1_value,
java.lang.String attribute2_name,
java.lang.String attribute2_value) |
|
static void |
appendElement(java.io.Writer w,
java.lang.String element_name,
java.lang.String value,
java.lang.String attribute1_name,
java.lang.String attribute1_value,
java.lang.String attribute2_name,
java.lang.String attribute2_value,
java.lang.String indentation) |
|
static void |
appendElement(java.io.Writer w,
java.lang.String element_name,
java.lang.String attribute1_name,
java.lang.String attribute1_value,
java.lang.String attribute2_name,
java.lang.String attribute2_value,
java.lang.String attribute3_name,
java.lang.String attribute3_value,
java.lang.String attribute4_name,
java.lang.String attribute4_value,
java.lang.String indentation) |
|
static void |
appendElement(java.io.Writer w,
java.lang.String element_name,
java.lang.String value,
java.lang.String attribute1_name,
java.lang.String attribute1_value,
java.lang.String attribute2_name,
java.lang.String attribute2_value,
java.lang.String attribute3_name,
java.lang.String attribute3_value,
java.lang.String attribute4_name,
java.lang.String attribute4_value,
java.lang.String attribute5_name,
java.lang.String attribute5_value,
java.lang.String indentation) |
|
static void |
appendOpen(java.io.Writer w,
java.lang.String element_name) |
|
static void |
appendOpen(java.io.Writer w,
java.lang.String element_name,
java.lang.String attribute_name,
java.lang.String attribute_value) |
|
static void |
appendOpen(java.io.Writer w,
java.lang.String element_name,
java.lang.String attribute1_name,
java.lang.String attribute1_value,
java.lang.String attribute2_name,
java.lang.String attribute2_value) |
|
static void |
appendOpen(java.io.Writer w,
java.lang.String element_name,
java.lang.String attribute1_name,
java.lang.String attribute1_value,
java.lang.String attribute2_name,
java.lang.String attribute2_value,
java.lang.String attribute3_name,
java.lang.String attribute3_value) |
|
static void |
appendOpen(java.io.Writer w,
java.lang.String element_name,
java.lang.String attribute1_name,
java.lang.String attribute1_value,
java.lang.String attribute2_name,
java.lang.String attribute2_value,
java.lang.String attribute3_name,
java.lang.String attribute3_value,
java.lang.String attribute4_name,
java.lang.String attribute4_value) |
|
static void |
appendOpen(java.io.Writer w,
java.lang.String element_name,
java.lang.String attribute1_name,
java.lang.String attribute1_value,
java.lang.String attribute2_name,
java.lang.String attribute2_value,
java.lang.String attribute3_name,
java.lang.String attribute3_value,
java.lang.String attribute4_name,
java.lang.String attribute4_value,
java.lang.String attribute5_name,
java.lang.String attribute5_value) |
|
static java.util.ArrayList<PhylogenyData> |
copy(java.util.ArrayList<PhylogenyData> list) |
Creates a deep copy of ArrayList of PhylogenyData objects.
|
static void |
drawLine(double x1,
double y1,
double x2,
double y2,
java.awt.Graphics g) |
|
static java.lang.String |
replaceIllegalXmlCharacters(java.lang.String value) |
public static final double BRANCH_LENGTH_DEFAULT
public static void appendClose(java.io.Writer w, java.lang.String element_name) throws java.io.IOException
java.io.IOException
public static void appendElement(java.io.Writer w, java.lang.String element_name, java.lang.String value) throws java.io.IOException
java.io.IOException
public static void appendElement(java.io.Writer w, java.lang.String element_name, java.lang.String value, java.lang.String indentation) throws java.io.IOException
java.io.IOException
public static void appendElement(java.io.Writer w, java.lang.String element_name, java.lang.String value, java.lang.String attribute_name, java.lang.String attribute_value) throws java.io.IOException
java.io.IOException
public static void appendElement(java.io.Writer w, java.lang.String element_name, java.lang.String value, java.lang.String attribute_name, java.lang.String attribute_value, java.lang.String indentation) throws java.io.IOException
java.io.IOException
public static void appendElement(java.io.Writer w, java.lang.String element_name, java.lang.String value, java.lang.String attribute1_name, java.lang.String attribute1_value, java.lang.String attribute2_name, java.lang.String attribute2_value, java.lang.String indentation) throws java.io.IOException
java.io.IOException
public static void appendElement(java.io.Writer w, java.lang.String element_name, java.lang.String value, java.lang.String attribute1_name, java.lang.String attribute1_value, java.lang.String attribute2_name, java.lang.String attribute2_value) throws java.io.IOException
java.io.IOException
public static void appendElement(java.io.Writer w, java.lang.String element_name, java.lang.String attribute1_name, java.lang.String attribute1_value, java.lang.String attribute2_name, java.lang.String attribute2_value, java.lang.String attribute3_name, java.lang.String attribute3_value, java.lang.String attribute4_name, java.lang.String attribute4_value, java.lang.String indentation) throws java.io.IOException
java.io.IOException
public static void appendElement(java.io.Writer w, java.lang.String element_name, java.lang.String value, java.lang.String attribute1_name, java.lang.String attribute1_value, java.lang.String attribute2_name, java.lang.String attribute2_value, java.lang.String attribute3_name, java.lang.String attribute3_value, java.lang.String attribute4_name, java.lang.String attribute4_value, java.lang.String attribute5_name, java.lang.String attribute5_value, java.lang.String indentation) throws java.io.IOException
java.io.IOException
public static void appendOpen(java.io.Writer w, java.lang.String element_name) throws java.io.IOException
java.io.IOException
public static void appendOpen(java.io.Writer w, java.lang.String element_name, java.lang.String attribute_name, java.lang.String attribute_value) throws java.io.IOException
java.io.IOException
public static void appendOpen(java.io.Writer w, java.lang.String element_name, java.lang.String attribute1_name, java.lang.String attribute1_value, java.lang.String attribute2_name, java.lang.String attribute2_value) throws java.io.IOException
java.io.IOException
public static void appendOpen(java.io.Writer w, java.lang.String element_name, java.lang.String attribute1_name, java.lang.String attribute1_value, java.lang.String attribute2_name, java.lang.String attribute2_value, java.lang.String attribute3_name, java.lang.String attribute3_value) throws java.io.IOException
java.io.IOException
public static void appendOpen(java.io.Writer w, java.lang.String element_name, java.lang.String attribute1_name, java.lang.String attribute1_value, java.lang.String attribute2_name, java.lang.String attribute2_value, java.lang.String attribute3_name, java.lang.String attribute3_value, java.lang.String attribute4_name, java.lang.String attribute4_value) throws java.io.IOException
java.io.IOException
public static void appendOpen(java.io.Writer w, java.lang.String element_name, java.lang.String attribute1_name, java.lang.String attribute1_value, java.lang.String attribute2_name, java.lang.String attribute2_value, java.lang.String attribute3_name, java.lang.String attribute3_value, java.lang.String attribute4_name, java.lang.String attribute4_value, java.lang.String attribute5_name, java.lang.String attribute5_value) throws java.io.IOException
java.io.IOException
public static java.util.ArrayList<PhylogenyData> copy(java.util.ArrayList<PhylogenyData> list)
list
- an ArrayList of PhylogenyData objectspublic static void drawLine(double x1, double y1, double x2, double y2, java.awt.Graphics g)
public static java.lang.String replaceIllegalXmlCharacters(java.lang.String value)