S
- each element of the alignment Profile
is of type SC
- each element of an AlignedSequence
is a Compound
of type Cjava.lang.Iterable<S>
, Profile<S,C>
MutableProfilePair<S,C>
, MutableSequencePair<S,C>
public interface MutableProfile<S extends Sequence<C>,C extends Compound> extends Profile<S,C>
Profile
. Returned List
s are modifiable.Profile.StringFormat
Modifier and Type | Method | Description |
---|---|---|
void |
setSequences(java.util.List<AlignedSequence<S,C>> sequences) |
Sets entirely new set of
AlignedSequence s. |
getAlignedSequence, getAlignedSequence, getAlignedSequences, getAlignedSequences, getAlignedSequences, getCompoundAt, getCompoundAt, getCompoundCountsAt, getCompoundCountsAt, getCompoundsAt, getCompoundSet, getCompoundWeightsAt, getCompoundWeightsAt, getIndexOf, getIndicesAt, getLastIndexOf, getLength, getOriginalSequences, getSize, getSubProfile, hasGap, isCircular, toString, toString, toString
void setSequences(java.util.List<AlignedSequence<S,C>> sequences)
AlignedSequence
s.sequences
- new set of sequencesjava.lang.IllegalArgumentException
- if sequences have different lengths