public class AFPOptimizer
extends java.lang.Object
Modifier and Type | Field | Description |
---|---|---|
static boolean |
debug |
Constructor | Description |
---|---|
AFPOptimizer() |
Modifier and Type | Method | Description |
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static void |
blockInfo(AFPChain afpChain) |
get the afp list and residue list for each block
|
static void |
optimizeAln(FatCatParameters params,
AFPChain afpChain,
Atom[] ca1,
Atom[] ca2) |
optimize the alignment by dynamic programming
|
static void |
updateScore(FatCatParameters params,
AFPChain afpChain) |
to update the chaining score after block delete and merge processed
the blockScore value is important for significance evaluation
|
public static final boolean debug
public static void optimizeAln(FatCatParameters params, AFPChain afpChain, Atom[] ca1, Atom[] ca2) throws StructureException
StructureException
public static void blockInfo(AFPChain afpChain)
public static void updateScore(FatCatParameters params, AFPChain afpChain)