BasicSequence
public interface MolecularSequence
Modifier and Type | Interface | Description |
---|---|---|
static class |
MolecularSequence.TYPE |
Modifier and Type | Field | Description |
---|---|---|
static java.lang.String |
AA_REGEXP |
|
static java.lang.String |
DNA_REGEXP |
|
static char |
GAP |
|
static java.lang.String |
GAP_STR |
|
static java.lang.String |
RNA_REGEXP |
|
static char |
TERMINATE |
|
static char |
UNSPECIFIED_AA |
|
static char |
UNSPECIFIED_NUC |
Modifier and Type | Method | Description |
---|---|---|
java.lang.String |
getIdentifier() |
|
int |
getLength() |
|
char[] |
getMolecularSequence() |
|
java.lang.String |
getMolecularSequenceAsString() |
|
int |
getNumberOfGapResidues() |
|
char |
getResidueAt(int position) |
|
MolecularSequence.TYPE |
getType() |
|
boolean |
isGapAt(int position) |
static final char UNSPECIFIED_AA
static final char UNSPECIFIED_NUC
static final char GAP
static final java.lang.String GAP_STR
static final char TERMINATE
static final java.lang.String AA_REGEXP
static final java.lang.String DNA_REGEXP
static final java.lang.String RNA_REGEXP
java.lang.String getIdentifier()
int getLength()
int getNumberOfGapResidues()
char[] getMolecularSequence()
java.lang.String getMolecularSequenceAsString()
char getResidueAt(int position)
boolean isGapAt(int position)
MolecularSequence.TYPE getType()